Anomalous diffusion of vibrational energy in proteins

Journal of Chemical Physics

Volumn 119, Issue 23, 2003, Pages 12673-12679

  Yu, Xin ^a   Leitner, David M ^a  

^a UNIVERSITY OF NEVADA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; DIFFUSION; FRACTALS; KINETIC ENERGY; MOLECULAR DYNAMICS; MOLECULES; RELAXATION PROCESSES; TEMPERATURE; VECTORS;

CYTOCHROME C; GREEN FLUORESCENT PROTEIN; MYOGLOBIN; VIBRATIONAL ENERGY; VIBRATIONAL WAVE PACKETS;

PROTEINS;

EID: 0347319403     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1626636     Document Type: Article

References (32)

1. T. Nishikawa and N. Go, Proteins: Struct., Funct., Genet. 2, 308 (1987).
2. B. R. Brooks and M. Karplus, Proc. Natl. Acad. Sci. U.S.A. 80, 6571 (1983).
3. M. Levitt, C. Sander, and P. S. Stern, J. Mol. Biol. 181, 423 (1985).
4. C. L. Brooks, M. Karplus, and B. M. Pettitt, Adv. Chem. Phys. 71, 1 (1988).
5. J. A. McCammon and S. C. Harvey, Dynamics of Proteins and Nucleic Acids (Cambridge University Press, Cambridge, 1987).
6. G. Li and Q. Cui, Biophys. J. 83, 2457 (2002).
7. P. Hamm, M. Lim, and R. M. Hochstrasser, J. Phys. Chem. B 102, 6123 (1998).
8. K. A. Peterson, C. W. Rella, J. R. Engholm, and H. A. Schwettman, J. Phys. Chem. B 103, 557 (1999).
9. A. Xie, L. van der Meer, W. Hoff, and R. H. Austin, Phys. Rev. Lett. 84, 5435 (2000).
10. X. Yu and D. M. Leitner, J. Phys. Chem. B 107, 1698 (2003).
11. A. E. García, Phys. Rev. Lett. 68, 2696 (1992).
12. H. Frauenfelder, S. G. Sligar, and P. G. Wolynes, Science 254, 1598 (1991).
13. I. E. T. Iben, D. Braunstein, W. Doster et al., Phys. Rev. Lett. 62, 1916 (1989).
14. A. E. García, R. Blumenfeld, G. Hummer, and J. A. Krumhansl, Physica D 107, 225 (1997).
15. D. A. Lidar, D. Thirumalai, R. Elber, and R. B. Gerber, Phys. Rev. E 59, 2231 (1999).
16. T. Y. Shen, K. Tai, and J. A. McCammon, Phys. Rev. E 63, 041902 (2001).
17. P. Carlini, A. R. Bizzarri, and S. Cannistraro, Physica D 165, 242 (2002).
18. J.-P. Bouchaud and A. Georges, Phys. Rep. 195, 127 (1990).
19. T. G. Dewey, Fractals in Molecular Biophysics (Oxford University Press, New York, 1997).
20. R. Elber, in The Fractal Approach to Heterogeneous Chemistry, edited by D. Avnir (Wiley, New York, 1989), p. 345.
21. R. Elber and M. Karplus, Phys. Rev. Lett. 56, 394 (1986).
22. H. J. Stapleton, J. P. Allen, C. P. Flynn, D. G. Stinson, and S. R. Kurtz, Phys. Rev. Lett. 45, 1456 (1980).
23. A. R. Drews, B. D. Thayer, H. J. Stapleton, G. C. Wagner, G. Giuliarelli, and S. Cannistraro, Biophys. J. 57, 157 (1990).
24. D. E. Sagnella, J. E. Straub, and D. Thirumalai, J. Chem. Phys. 113, 7702 (2000).
25. S. Alexander and R. Orbach, J. Phys. (France) Lett. 43, L-625 (1982).
26. R. Rammal and G. Toulouse, J. Phys. (France) Lett. 44, L-13 (1983).
27. P. B. Allen and J. Kelner, Am. J. Phys. 66, 497 (1998).
28. R. Elber et al., Comput. Phys. Commun. 91, 159 (1995); The version for this study was obtained from http://www.tc.cornell.edu/reports/NIH/resource/CompBiologyTools/moil.
29. T. Nakayama, K. Yakubo, and R. L. Orbach, Rev. Mod. Phys. 66, 381 (1994).
30. K. Yakubo and T. Nakayama, Phys. Rev. B 40, 517 (1989).
31. T. S. Chow, Mesoscopic Physics of Complex Materials (Springer-Verlag, New York, 2000), p. 90.
32. H. Yang, G. Luo, P. Karnchanaphanurach et al., Science 302, 262 (2003).