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Volumn 2, Issue 6, 2010, Pages 472-477

Geometry-controlled kinetics

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TRANSCRIPTION FACTOR;

EID: 77952805607     PISSN: 17554330     EISSN: 17554349     Source Type: Journal    
DOI: 10.1038/nchem.622     Document Type: Article
Times cited : (398)

References (46)
  • 2
    • 33744544180 scopus 로고
    • Fractal reaction kinetics
    • Kopelman, R. Fractal reaction kinetics. Science 241, 1620-1626 (1988).
    • (1988) Science , vol.241 , pp. 1620-1626
    • Kopelman, R.1
  • 4
    • 33645033645 scopus 로고    scopus 로고
    • Probing gene expression in live cells, one protein molecule at a time
    • Yu, J., Xiao, J., Ren, X., Lao, K. & Xie, X. S. Probing gene expression in live cells, one protein molecule at a time. Science 311, 1600-1603 (2006).
    • (2006) Science , vol.311 , pp. 1600-1603
    • Yu, J.1    Xiao, J.2    Ren, X.3    Lao, K.4    Xie, X.S.5
  • 5
    • 34249932435 scopus 로고    scopus 로고
    • Probing transcription factor dynamics at the singlemolecule level in a living cell
    • Elf, J., Li, G.-W. & Xie, X. S. Probing transcription factor dynamics at the singlemolecule level in a living cell. Science 316, 1191-1194 (2007).
    • (2007) Science , vol.316 , pp. 1191-1194
    • Elf, J.1    Li, G.-W.2    Xie, X.S.3
  • 6
    • 36148968483 scopus 로고    scopus 로고
    • The narrow escape problem for diffusion in cellular microdomains
    • Schuss, Z., Singer, A. & Holcman, D. The narrow escape problem for diffusion in cellular microdomains. Proc. Natl Acad. Sci. USA 104, 16098-16103 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 16098-16103
    • Schuss, Z.1    Singer, A.2    Holcman, D.3
  • 8
    • 38849083316 scopus 로고    scopus 로고
    • Biophysics: Cell commuters avoid delays
    • Mirny, L. Biophysics: Cell commuters avoid delays. Nature Phys. 4, 93-95 (2008).
    • (2008) Nature Phys , vol.4 , pp. 93-95
    • Mirny, L.1
  • 11
    • 35948986360 scopus 로고    scopus 로고
    • Mathematical physics: First encounters
    • Shlesinger,M. F.Mathematical physics: first encounters. Nature 450, 40-41 (2007).
    • (2007) Nature , vol.450 , pp. 40-41
    • Shlesinger, M.F.1
  • 12
    • 30344486302 scopus 로고    scopus 로고
    • First-passage times for random walks in bounded domains
    • Condamin, S., Benichou, O. & Moreau, M. First-passage times for random walks in bounded domains. Phys. Rev. Lett. 95, 260601 (2005).
    • (2005) Phys. Rev. Lett. , vol.95 , pp. 260601
    • Condamin, S.1    Benichou, O.2    Moreau, M.3
  • 14
    • 42549164971 scopus 로고    scopus 로고
    • Narrow-escape time problem: Time needed for a particle to exit a confining domain through a small window
    • Benichou, O. & Voituriez, R. Narrow-escape time problem: Time needed for a particle to exit a confining domain through a small window. Phys. Rev. Lett. 100, 168105 (2008).
    • (2008) Phys. Rev. Lett. , vol.100 , pp. 168105
    • Benichou, O.1    Voituriez, R.2
  • 15
    • 53349120669 scopus 로고    scopus 로고
    • Zero constant formula for first-passage observables in bounded domains
    • Benichou, O., Meyer, B., Tejedor, V. & Voituriez, R. Zero constant formula for first-passage observables in bounded domains. Phys. Rev. Lett. 101, 130601 (2008).
    • (2008) Phys. Rev. Lett. , vol.101 , pp. 130601
    • Benichou, O.1    Meyer, B.2    Tejedor, V.3    Voituriez, R.4
  • 16
    • 0040307478 scopus 로고
    • Anomalous diffusion in disordered media: Statistical mechanisms, models and physical applications
    • Bouchaud, J.-P. & Georges, A. Anomalous diffusion in disordered media: Statistical mechanisms, models and physical applications. Phys. Rep. 195, 127-293 (1990).
    • (1990) Phys. Rep. , vol.195 , pp. 127-293
    • Bouchaud, J.-P.1    Georges, A.2
  • 17
    • 0032578483 scopus 로고    scopus 로고
    • Time course of reactions controlled and gated by intramolecular dynamics of proteins
    • Kurzynski, M., Palacz, K. & Chelminiak, P. Time course of reactions controlled and gated by intramolecular dynamics of proteins: Proc. Natl Acad. Sci. USA 95, 11685-11690 (1998).
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 11685-11690
    • Kurzynski, M.1    Palacz, K.2    Chelminiak, P.3
  • 19
    • 34249307315 scopus 로고    scopus 로고
    • Nuclear organization of the genome and the potential for gene regulation
    • Fraser, P. & Bickmore,W. Nuclear organization of the genome and the potential for gene regulation. Nature 447, 413-417 (2007).
    • (2007) Nature , vol.447 , pp. 413-417
    • Fraser, P.1    Bickmore, W.2
  • 20
    • 0027318513 scopus 로고
    • Macromolecular crowding: Biochemical, biophysical, and physiological consequences
    • Zimmerman, S. B. & Minton, A. P. Macromolecular crowding: Biochemical, biophysical, and physiological consequences. Ann. Rev. Biophys. Biom. 22 (1993).
    • (1993) Ann. Rev. Biophys. Biom. , vol.22
    • Zimmerman, S.B.1    Minton, A.P.2
  • 21
    • 41049090929 scopus 로고    scopus 로고
    • Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences
    • Zhou, H.-X., Rivas, G. & Minton, A. P. Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences. Ann. Rev. Biophys. 37, 375-397 (2008).
    • (2008) Ann. Rev. Biophys. , vol.37 , pp. 375-397
    • Zhou, H.-X.1    Rivas, G.2    Minton, A.P.3
  • 23
    • 36749112484 scopus 로고
    • Kinetics of diffusion-controlled processes in dense polymer systems. I. Nonentangled regimes
    • de Gennes, P. G. Kinetics of diffusion-controlled processes in dense polymer systems. i. nonentangled regimes. J. Chem. Phys. 76, 3316-3321 (1982).
    • (1982) J. Chem. Phys. , vol.76 , pp. 3316-3321
    • De Gennes, P.G.1
  • 24
    • 33847032231 scopus 로고    scopus 로고
    • Random walks and brownian motion: A method of computation for first-passage times and related quantities in confined geometries
    • Condamin, S., Benichou, O. & Moreau, M. Random walks and brownian motion: a method of computation for first-passage times and related quantities in confined geometries. Phys. Rev. E 75, 021111 (2007).
    • (2007) Phys. Rev. e , vol.75 , pp. 021111
    • Condamin, S.1    Benichou, O.2    Moreau, M.3
  • 26
    • 7044252203 scopus 로고
    • Random walks on lattices. iii. calculation of first-passage times with ap- plication to exciton trapping on photosynthetic units
    • Montroll, E. W. Random walks on lattices. iii. calculation of first-passage times with ap- plication to exciton trapping on photosynthetic units. J. Math. Phys. 10, 753-765 (1969).
    • (1969) J. Math. Phys. , vol.10 , pp. 753-765
    • Montroll, E.W.1
  • 27
    • 41349095853 scopus 로고    scopus 로고
    • Analytic expression for the mean time to absorption for a random walker on the sierpinski gasket
    • Kozak, J. J. & Balakrishnan, V. Analytic expression for the mean time to absorption for a random walker on the sierpinski gasket. Phys. Rev. E 65, 021105 (2002).
    • (2002) Phys. Rev. e , vol.65 , pp. 021105
    • Kozak, J.J.1    Balakrishnan, V.2
  • 28
    • 38849093210 scopus 로고    scopus 로고
    • Exact mean first-passage time on the t-graph
    • Agliari, E. Exact mean first-passage time on the t-graph. Phys. Rev. E 77, 011128 (2008).
    • (2008) Phys. Rev. e , vol.77 , pp. 011128
    • Agliari, E.1
  • 29
    • 54549083455 scopus 로고    scopus 로고
    • Global first-passage times of fractal lattices
    • Haynes, C. P. & Roberts, A. P. Global first-passage times of fractal lattices. Phys. Rev. E 78, 041111 (2008).
    • (2008) Phys. Rev. e , vol.78 , pp. 041111
    • Haynes, C.P.1    Roberts, A.P.2
  • 30
    • 77149175442 scopus 로고    scopus 로고
    • Global mean first-passage times of random walks on complex networks
    • Tejedor, V., Bénichou, O. & Voituriez, R. Global mean first-passage times of random walks on complex networks. Phys. Rev. E 80, 065104 (2009).
    • (2009) Phys. Rev. e , vol.80 , pp. 065104
    • Tejedor, V.1    Bénichou, O.2    Voituriez, R.3
  • 31
    • 0002641421 scopus 로고    scopus 로고
    • The random walk's guide to anomalous diffusion: A fractionnal dynamics approach
    • Metzler, R. & Klafter, J. The random walk's guide to anomalous diffusion: a fractionnal dynamics approach. Phys. Rep. 339, 1-77 (2000).
    • (2000) Phys. Rep. , vol.339 , pp. 1-77
    • Metzler, R.1    Klafter, J.2
  • 32
    • 0034640133 scopus 로고    scopus 로고
    • Anomalous diffusion of uorescent probes inside living cell nuclei investigated by spatially-resolved uorescence correlation spectroscopy
    • Wachsmuth, M.,Waldeck,W. & Langowski, J. Anomalous diffusion of uorescent probes inside living cell nuclei investigated by spatially-resolved uorescence correlation spectroscopy. J. Mol. Biol. 298, 677-689 (2000).
    • (2000) J. Mol. Biol. , vol.298 , pp. 677-689
    • Wachsmuth, M.1    Waldeck, W.2    Langowski, J.3
  • 33
    • 33644885029 scopus 로고    scopus 로고
    • Physical nature of bacterial cytoplasm
    • Golding, E. & Cox, E. Physical nature of bacterial cytoplasm. Phys. Rev. Lett. 96, 981102 (2006).
    • (2006) Phys. Rev. Lett. , vol.96 , pp. 981102
    • Golding, E.1    Cox, E.2
  • 35
    • 0002567920 scopus 로고
    • Random walks on lattices. Ii
    • Montroll, E. W. & Weiss, G. H. Random walks on lattices. ii. J. Math. Phys. 6, 167-181 (1965).
    • (1965) J. Math. Phys. , vol.6 , pp. 167-181
    • Montroll, E.W.1    Weiss, G.H.2
  • 36
    • 34250415771 scopus 로고
    • Asymptotic solutions of continuous-time random walks
    • Shlesinger, M. F. Asymptotic solutions of continuous-time random walks. J. Stat. Phys. 10, 421-434 (1974).
    • (1974) J. Stat. Phys. , vol.10 , pp. 421-434
    • Shlesinger, M.F.1
  • 37
    • 34547340449 scopus 로고    scopus 로고
    • First-passage time distributions for subdiffusion in confined geometry
    • Condamin, S., Benichou, O. & Klafter, J. First-passage time distributions for subdiffusion in confined geometry. Phys. Rev. Lett. 98, 250602 (2007).
    • (2007) Phys. Rev. Lett. , vol.98 , pp. 250602
    • Condamin, S.1    Benichou, O.2    Klafter, J.3
  • 38
    • 6744246234 scopus 로고
    • Percolative versus homogenous energy transport kinetics: Time-resolved donor and acceptor uoresence of isotopic mixed naphthalene crystals
    • Parson, R. P. & Kopelman, R. Percolative versus homogenous energy transport kinetics: time-resolved donor and acceptor uoresence of isotopic mixed naphthalene crystals. Chem. Phys. Lett. 87, 528-532 (1982).
    • (1982) Chem. Phys. Lett. , vol.87 , pp. 528-532
    • Parson, R.P.1    Kopelman, R.2
  • 39
    • 38549161544 scopus 로고    scopus 로고
    • A biological interpretation of transient anomalous subdiffusion. ii. reaction kinetics
    • Saxton, M. J. A biological interpretation of transient anomalous subdiffusion. ii. reaction kinetics. Biophys. J. 94, 760-771 (2008).
    • (2008) Biophys. J. , vol.94 , pp. 760-771
    • Saxton, M.J.1
  • 40
    • 79961129957 scopus 로고    scopus 로고
    • Elucidating anomalous protein diffusion in living cells with fluorescence correlation spectroscopy-facts and pitfalls
    • Malchus, N. & Weiss, M. Elucidating anomalous protein diffusion in living cells with fluorescence correlation spectroscopy-facts and pitfalls. J. Fluoresc. (2009).
    • (2009) J. Fluoresc.
    • Malchus, N.1    Weiss, M.2
  • 41
    • 0034229978 scopus 로고    scopus 로고
    • Observation of laser speckle effects and nonclassical kinetics in an elementary chemical reaction
    • Monson, E. & Kopelman, R. Observation of laser speckle effects and nonclassical kinetics in an elementary chemical reaction. Phys. Rev. Lett. 85, 666-669 (2000).
    • (2000) Phys. Rev. Lett. , vol.85 , pp. 666-669
    • Monson, E.1    Kopelman, R.2
  • 42
    • 0037154218 scopus 로고    scopus 로고
    • Genome-wide analysis of clustered dorsal binding sites identifies putative target genes in the drosophila embryo
    • Markstein, M., Markstein, P., Markstein, V. & Levine, M. S. Genome-wide analysis of clustered dorsal binding sites identifies putative target genes in the drosophila embryo. Proc. Natl Acad. Sci. USA 99, 763-768 (2002).
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 763-768
    • Markstein, M.1    Markstein, P.2    Markstein, V.3    Levine, M.S.4
  • 43
    • 0036302047 scopus 로고    scopus 로고
    • Cajal body dynamics and association with chromatin are atp-dependent
    • Platani, M., Goldberg, I., Lamond, A. I. & Swedlow, J. R. Cajal body dynamics and association with chromatin are atp-dependent. Nat. Cell Biol. 4, 502-508 (2002).
    • (2002) Nat. Cell Biol. , vol.4 , pp. 502-508
    • Platani, M.1    Goldberg, I.2    Lamond, A.I.3    Swedlow, J.R.4
  • 44
    • 72449204595 scopus 로고    scopus 로고
    • Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin
    • Bancaud, A. et al. Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin. EMBO J. 28, 3785-3798 (2009).
    • (2009) EMBO J , vol.28 , pp. 3785-3798
    • Bancaud, A.1
  • 45
    • 14244270316 scopus 로고    scopus 로고
    • Fractal nature of chromatin organization in interphase chicken erythro- cyte nuclei: Dna structure exhibits biphasic fractal properties
    • Lebedev, D. V. et al. Fractal nature of chromatin organization in interphase chicken erythro- cyte nuclei: Dna structure exhibits biphasic fractal properties. FEBS Lett. 579, 1465-1468 (2005).
    • (2005) FEBS Lett , vol.579 , pp. 1465-1468
    • Lebedev, D.V.1
  • 46
    • 38749093755 scopus 로고    scopus 로고
    • Structural hierarchy of chromatin in chicken erythrocyte nuclei based on small-angle neutron scattering: Fractal nature of the large-scale chromatin organization
    • Lebedev, D. et al. Structural hierarchy of chromatin in chicken erythrocyte nuclei based on small-angle neutron scattering: Fractal nature of the large-scale chromatin organization. Crystallogr. Rep. 53, 110-115 (2008).
    • (2008) Crystallogr. Rep. , vol.53 , pp. 110-115
    • Lebedev, D.1


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