-
1
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O (2009) Origin, biogenesis, and activity of plant microRNAs. Cell 136: 669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
2
-
-
48249158259
-
The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis
-
Yu B, Bi L, Zheng B, Ji L, Chevalier D, et al. (2008) The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis. Proc Natl Acad Sci U S A 105: 10073-10078.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 10073-10078
-
-
Yu, B.1
Bi, L.2
Zheng, B.3
Ji, L.4
Chevalier, D.5
-
3
-
-
4344637081
-
Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions
-
Kurihara Y, Watanabe Y (2004) Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. Proc Natl Acad Sci U S A 101: 12753-12758.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 12753-12758
-
-
Kurihara, Y.1
Watanabe, Y.2
-
4
-
-
48249126187
-
The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1
-
Dong Z, Han MH, Fedoroff N (2008) The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1. Proc Natl Acad Sci U S A 105: 9970-9975.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 9970-9975
-
-
Dong, Z.1
Han, M.H.2
Fedoroff, N.3
-
5
-
-
33748314483
-
SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis
-
Yang L, Liu Z, Lu F, Dong A, Huang H (2006) SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis. Plant J 47: 841-850.
-
(2006)
Plant J
, vol.47
, pp. 841-850
-
-
Yang, L.1
Liu, Z.2
Lu, F.3
Dong, A.4
Huang, H.5
-
6
-
-
56649102410
-
Evolution of Arabidopsis MIR genes generates novel microRNA classes
-
Vazquez F, Blevins T, Ailhas J, Boller T, Meins F, Jr. (2008) Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acids Res 36: 6429-6438.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6429-6438
-
-
Vazquez, F.1
Blevins, T.2
Ailhas, J.3
Boller, T.4
Meins Jr., F.5
-
7
-
-
13644256193
-
Methylation as a crucial step in plant microRNA biogenesis
-
Yu B, Yang Z, Li J, Minakhina S, Yang M, et al. (2005) Methylation as a crucial step in plant microRNA biogenesis. Science 307: 932-935.
-
(2005)
Science
, vol.307
, pp. 932-935
-
-
Yu, B.1
Yang, Z.2
Li, J.3
Minakhina, S.4
Yang, M.5
-
8
-
-
0347361541
-
Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs
-
Yi R, Qin Y, Macara IG, Cullen BR (2003) Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes Dev 17: 3011-3016.
-
(2003)
Genes Dev
, vol.17
, pp. 3011-3016
-
-
Yi, R.1
Qin, Y.2
Macara, I.G.3
Cullen, B.R.4
-
9
-
-
23844550243
-
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs
-
Baumberger N, Baulcombe DC (2005) Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc Natl Acad Sci U S A 102: 11928-11933.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 11928-11933
-
-
Baumberger, N.1
Baulcombe, D.C.2
-
10
-
-
33749404806
-
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
-
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, et al. (2006) MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res 16: 1276-1288.
-
(2006)
Genome Res
, vol.16
, pp. 1276-1288
-
-
Lu, C.1
Kulkarni, K.2
Souret, F.F.3
MuthuValliappan, R.4
Tej, S.S.5
-
11
-
-
0037015239
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
-
Park W, Li J, Song R, Messing J, Chen X (2002) CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 12: 1484-1495.
-
(2002)
Curr Biol
, vol.12
, pp. 1484-1495
-
-
Park, W.1
Li, J.2
Song, R.3
Messing, J.4
Chen, X.5
-
12
-
-
1542350745
-
The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing
-
Vazquez F, Gasciolli V, Crete P, Vaucheret H (2004) The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr Biol 14: 346-351.
-
(2004)
Curr Biol
, vol.14
, pp. 346-351
-
-
Vazquez, F.1
Gasciolli, V.2
Crete, P.3
Vaucheret, H.4
-
13
-
-
14844339653
-
Nuclear processing and export of microRNAs in Arabidopsis
-
Park MY, Wu G, Gonzalez-Sulser A, Vaucheret H, Poethig RS (2005) Nuclear processing and export of microRNAs in Arabidopsis. Proc Natl Acad Sci U S A 102: 3691-3696.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 3691-3696
-
-
Park, M.Y.1
Wu, G.2
Gonzalez-Sulser, A.3
Vaucheret, H.4
Poethig, R.S.5
-
15
-
-
67651156037
-
Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana
-
Alves L, Jr., Niemeier S, Hauenschild A, Rehmsmeier M, Merkle T (2009) Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana. Nucleic Acids Res 37: 4010-4021.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 4010-4021
-
-
Alves Jr., L.1
Niemeier, S.2
Hauenschild, A.3
Rehmsmeier, M.4
Merkle, T.5
-
16
-
-
38549110664
-
Update of ASRP: The Arabidopsis Small RNA Project database
-
Backman TW, Sullivan CM, Cumbie JS, Miller ZA, Chapman EJ, et al. (2008) Update of ASRP: the Arabidopsis Small RNA Project database. Nucleic Acids Res 36: D982-985.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Backman, T.W.1
Sullivan, C.M.2
Cumbie, J.S.3
Miller, Z.A.4
Chapman, E.J.5
-
17
-
-
0037144457
-
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
-
Llave C, Xie Z, Kasschau KD, Carrington JC (2002) Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297: 2053-2056.
-
(2002)
Science
, vol.297
, pp. 2053-2056
-
-
Llave, C.1
Xie, Z.2
Kasschau, K.D.3
Carrington, J.C.4
-
18
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 14: 787-799.
-
(2004)
Mol Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
19
-
-
49449118943
-
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
-
German MA, Pillay M, Jeong DH, Hetawal A, Luo S, et al. (2008) Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol 26: 941-946.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 941-946
-
-
German, M.A.1
Pillay, M.2
Jeong, D.H.3
Hetawal, A.4
Luo, S.5
-
20
-
-
0037320231
-
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction
-
Kasschau KD, Xie Z, Allen E, Llave C, Chapman EJ, et al. (2003) P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction. Dev Cell 4: 205-217.
-
(2003)
Dev Cell
, vol.4
, pp. 205-217
-
-
Kasschau, K.D.1
Xie, Z.2
Allen, E.3
Llave, C.4
Chapman, E.J.5
-
21
-
-
17444430392
-
microRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
Allen E, Xie Z, Gustafson AM, Carrington JC (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
22
-
-
33745804463
-
MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis
-
Ronemus M, Vaughn MW, Martienssen RA (2006) MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. Plant Cell 18: 1559-1574.
-
(2006)
Plant Cell
, vol.18
, pp. 1559-1574
-
-
Ronemus, M.1
Vaughn, M.W.2
Martienssen, R.A.3
-
23
-
-
34848898946
-
Conservation and evolution of miRNA regulatory programs in plant development
-
Willmann MR, Poethig RS (2007) Conservation and evolution of miRNA regulatory programs in plant development. Curr Opin Plant Biol 10: 503-511.
-
(2007)
Curr Opin Plant Biol
, vol.10
, pp. 503-511
-
-
Willmann, M.R.1
Poethig, R.S.2
-
24
-
-
0029665335
-
SHORT INTEGUMENT (SIN1), a gene required for ovule development in Arabidopsis, also controls flowering time
-
Ray A, Lang JD, Golden T, Ray S (1996) SHORT INTEGUMENT (SIN1), a gene required for ovule development in Arabidopsis, also controls flowering time. Development 122: 2631-2638.
-
(1996)
Development
, vol.122
, pp. 2631-2638
-
-
Ray, A.1
Lang, J.D.2
Golden, T.3
Ray, S.4
-
26
-
-
0037738567
-
HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis
-
Bollman KM, Aukerman MJ, Park MY, Hunter C, Berardini TZ, et al. (2003) HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis. Development 130: 1493-1504.
-
(2003)
Development
, vol.130
, pp. 1493-1504
-
-
Bollman, K.M.1
Aukerman, M.J.2
Park, M.Y.3
Hunter, C.4
Berardini, T.Z.5
-
27
-
-
35548949826
-
The small interfering RNA production pathway is required for shoot meristem initiation in rice
-
Nagasaki H, Itoh J, Hayashi K, Hibara K, Satoh-Nagasawa N, et al. (2007) The small interfering RNA production pathway is required for shoot meristem initiation in rice. Proc Natl Acad Sci U S A 104: 14867-14871.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 14867-14871
-
-
Nagasaki, H.1
Itoh, J.2
Hayashi, K.3
Hibara, K.4
Satoh-Nagasawa, N.5
-
28
-
-
0141493493
-
Control of leaf morphogenesis by microRNAs
-
Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, et al. (2003) Control of leaf morphogenesis by microRNAs. Nature 425: 257-263.
-
(2003)
Nature
, vol.425
, pp. 257-263
-
-
Palatnik, J.F.1
Allen, E.2
Wu, X.3
Schommer, C.4
Schwab, R.5
-
29
-
-
1642366133
-
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
-
Chen X (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 303: 2022-2025.
-
(2004)
Science
, vol.303
, pp. 2022-2025
-
-
Chen, X.1
-
30
-
-
34047174556
-
The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA
-
Chuck G, Cigan AM, Saeteurn K, Hake S (2007) The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA. Nat Genet 39: 544-549.
-
(2007)
Nat Genet
, vol.39
, pp. 544-549
-
-
Chuck, G.1
Cigan, A.M.2
Saeteurn, K.3
Hake, S.4
-
31
-
-
24944510549
-
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development
-
Guo HS, Xie Q, Fei JF, Chua NH (2005) MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development. Plant Cell 17: 1376-1386.
-
(2005)
Plant Cell
, vol.17
, pp. 1376-1386
-
-
Guo, H.S.1
Xie, Q.2
Fei, J.F.3
Chua, N.H.4
-
32
-
-
21544469418
-
microRNA172 down-regulates glossy15 to promote vegetative phase change in maize
-
Lauter N, Kampani A, Carlson S, Goebel M, Moose SP (2005) microRNA172 down-regulates glossy15 to promote vegetative phase change in maize. Proc Natl Acad Sci U S A 102: 9412-9417.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 9412-9417
-
-
Lauter, N.1
Kampani, A.2
Carlson, S.3
Goebel, M.4
Moose, S.P.5
-
33
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim LP, Lau NC, Garrett-Engele P, Grimson A, Schelter JM, et al. (2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433: 769-773.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
-
34
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article3
-
Smyth GK (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
36
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker IL (2003) Vienna RNA secondary structure server. Nucleic Acids Res 31: 3429-3431.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
37
-
-
1642416044
-
A cytosolic glucosyltransferase is required for conversion of starch to sucrose in Arabidopsis leaves at night
-
Chia T, Thorneycroft D, Chapple A, Messerli G, Chen J, et al. (2004) A cytosolic glucosyltransferase is required for conversion of starch to sucrose in Arabidopsis leaves at night. Plant J 37: 853-863.
-
(2004)
Plant J
, vol.37
, pp. 853-863
-
-
Chia, T.1
Thorneycroft, D.2
Chapple, A.3
Messerli, G.4
Chen, J.5
-
38
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, et al. (2005) A gene expression map of Arabidopsis thaliana development. Nat Genet 37: 501-506.
-
(2005)
Nat Genet
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
-
39
-
-
40649090437
-
MicroRNA metabolism in plants
-
Chen X (2008) MicroRNA metabolism in plants. Curr Top Microbiol Immunol 320: 117-136.
-
(2008)
Curr Top Microbiol Immunol
, vol.320
, pp. 117-136
-
-
Chen, X.1
-
40
-
-
46249124331
-
SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complex
-
Pouch-Pelissier MN, Pelissier T, Elmayan T, Vaucheret H, Boko D, et al. (2008) SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complex. PLoS Genet 4: e1000096.
-
(2008)
PLoS Genet
, vol.4
-
-
Pouch-Pelissier, M.N.1
Pelissier, T.2
Elmayan, T.3
Vaucheret, H.4
Boko, D.5
-
41
-
-
32644454064
-
HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 29 OH of the 39 terminal nucleotide
-
Yang Z, Ebright YW, Yu B, Chen X (2006) HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 29 OH of the 39 terminal nucleotide. Nucleic Acids Res 34: 667-675.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 667-675
-
-
Yang, Z.1
Ebright, Y.W.2
Yu, B.3
Chen, X.4
-
42
-
-
33745271035
-
Functions of microRNAs and related small RNAs in plants
-
Mallory AC, Vaucheret H (2006) Functions of microRNAs and related small RNAs in plants. Nat Genet 38 Suppl: S31-36.
-
(2006)
Nat Genet
, vol.38
, Issue.SUPPL
-
-
Mallory, A.C.1
Vaucheret, H.2
-
43
-
-
33947236065
-
Genome-wide profiling and analysis of Arabidopsis siRNAs
-
Kasschau KD, Fahlgren N, Chapman EJ, Sullivan CM, Cumbie JS, et al. (2007) Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol 5: e57.
-
(2007)
PLoS Biol
, vol.5
-
-
Kasschau, K.D.1
Fahlgren, N.2
Chapman, E.J.3
Sullivan, C.M.4
Cumbie, J.S.5
-
44
-
-
60149090481
-
Criteria for annotation of plant MicroRNAs
-
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, et al. (2008) Criteria for annotation of plant MicroRNAs. Plant Cell 20: 3186-3190.
-
(2008)
Plant Cell
, vol.20
, pp. 3186-3190
-
-
Meyers, B.C.1
Axtell, M.J.2
Bartel, B.3
Bartel, D.P.4
Baulcombe, D.5
-
45
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, et al. (2005) Specific effects of microRNAs on the plant transcriptome. Dev Cell 8: 517-527.
-
(2005)
Dev Cell
, vol.8
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
-
46
-
-
63349083143
-
Characterization and expression profiles of miRNAs in rice seeds
-
Xue LJ, Zhang JJ, Xue HW (2009) Characterization and expression profiles of miRNAs in rice seeds. Nucleic Acids Res 37: 916-930.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 916-930
-
-
Xue, L.J.1
Zhang, J.J.2
Xue, H.W.3
-
47
-
-
27744537851
-
Human RISC couples microRNA biogenesis and posttranscriptional gene silencing
-
Gregory RI, Chendrimada TP, Cooch N, Shiekhattar R (2005) Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell 123: 631-640.
-
(2005)
Cell
, vol.123
, pp. 631-640
-
-
Gregory, R.I.1
Chendrimada, T.P.2
Cooch, N.3
Shiekhattar, R.4
-
48
-
-
34848860582
-
Tissue-dependent paired expression of miRNAs
-
Ro S, Park C, Young D, Sanders KM, Yan W (2007) Tissue-dependent paired expression of miRNAs. Nucleic Acids Res 35: 5944-5953.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5944-5953
-
-
Ro, S.1
Park, C.2
Young, D.3
Sanders, K.M.4
Yan, W.5
-
49
-
-
33745156778
-
Identification of 188 conserved maize microRNAs and their targets
-
Zhang B, Pan X, Anderson TA (2006) Identification of 188 conserved maize microRNAs and their targets. FEBS Lett 580: 3753-3762.
-
(2006)
FEBS Lett
, vol.580
, pp. 3753-3762
-
-
Zhang, B.1
Pan, X.2
Anderson, T.A.3
-
50
-
-
73649133268
-
A genome-wide characterization of microRNA genes in maize
-
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, et al. (2009) A genome-wide characterization of microRNA genes in maize. PLoS Genet 5: e1000716.
-
(2009)
PLoS Genet
, vol.5
-
-
Zhang, L.1
Chia, J.M.2
Kumari, S.3
Stein, J.C.4
Liu, Z.5
-
51
-
-
22144464033
-
Cloning and characterization of microRNAs from rice
-
Sunkar R, Girke T, Jain PK, Zhu JK (2005) Cloning and characterization of microRNAs from rice. Plant Cell 17: 1397-1411.
-
(2005)
Plant Cell
, vol.17
, pp. 1397-1411
-
-
Sunkar, R.1
Girke, T.2
Jain, P.K.3
Zhu, J.K.4
-
52
-
-
10844290766
-
A model-based background adjustment for oligonucleotide expression arrays
-
Wu Z, Irizarry R, Gentleman R, Martinez-Murillo F, Spencer F (2004) A model-based background adjustment for oligonucleotide expression arrays. Journal of the American Statistical Association 99: 909-917.
-
(2004)
Journal of the American Statistical Association
, vol.99
, pp. 909-917
-
-
Wu, Z.1
Irizarry, R.2
Gentleman, R.3
Martinez-Murillo, F.4
Spencer, F.5
|