Ribosomal protein l35 is required for 27sb pre-rrna processing in Saccharomyces cerevisiae

Nucleic Acids Research

Volumn 38, Issue 15, 2010, Pages 5177-5192

  Babiano, Reyes ^a   de la cruz, Jesús ^a  

^a UNIVERSITY OF SEVILLE   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

INTERNAL TRANSCRIBED SPACER 2; RIBOSOMAL PROTEIN L35; RIBOSOME PROTEIN; RIBOSOME RNA; RIBOSOME RNA PRECURSOR; UNCLASSIFIED DRUG; RNA PRECURSOR; RPL35A PROTEIN, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN;

ARTICLE; BIOGENESIS; CELL CYCLE ARREST; CELL CYCLE G1 PHASE; CELL NUCLEUS; CONTROLLED STUDY; CYTOPLASM; FLOW CYTOMETRY; NONHUMAN; NUCLEOLUS; POLYSOME; PRIORITY JOURNAL; RIBOSOME; RIBOSOME SUBUNIT; RNA PROCESSING; SACCHAROMYCES CEREVISIAE; ACTIVE TRANSPORT; GENE EXPRESSION REGULATION; GENETICS; LARGE RIBOSOMAL SUBUNIT; METABOLISM; PHENOTYPE; PHYSIOLOGY;

ACTIVE TRANSPORT, CELL NUCLEUS; CELL NUCLEUS; G1 PHASE; GENE EXPRESSION REGULATION, FUNGAL; PHENOTYPE; RIBOSOMAL PROTEINS; RIBOSOME SUBUNITS, LARGE, EUKARYOTIC; RNA PRECURSORS; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, RIBOSOMAL; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 77956111516     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq260     Document Type: Article

References (111)

1. Steitz, T.A. (2008) A structural understanding of the dynamic ribosome machine. Nat. Rev. Mol. Cell. Biol., 9, 242-253.
2. Schmeing, T.M. and Ramakrishnan, V. (2009) What recent ribosome structures have revealed about the mechanism of translation. Nature, 461, 1234-1242.
3. Spahn, C.M., Beckmann, R., Eswar, N., Penczek, P.A., Sali, A., Blobel, G. and Frank, J. (2001) Structure of the 80S ribosome from Saccharomyces cerevisiae-tRNA-ribosome and subunit-subunit interactions. Cell, 107, 373-386.
4. Chandramouli, P., Topf, M., Menetret, J.F., Eswar, N., Cannone, J.J., Gutell, R.R., Sali, A. and Akey, C.W. (2008) Structure of the mammalian 80S ribosome at 8.7 A resolution. Structure, 16, 535-548.
5. Henras, A.K., Soudet, J., Gerus, M., Lebaron, S., Caizergues-Ferrer, M., Mougin, A. and Henry, Y. (2008) The post-transcriptional steps of eukaryotic ribosome biogenesis. Cell. Mol. Life Sci., 65, 2334-2359.
6. Gerbi, S.A., Borovjagin, A.V. and Lange, T.S. (2003) The nucleolus: a site of ribonucleoprotein maturation. Curr. Opin. Cell Biol., 15, 318-325.
7. Udem, S.A. and Warner, J.R. (1973) The cytoplasmic maturation of a ribosomal precursor ribonucleic acid in yeast. J. Biol. Chem., 248, 1412-1416.
8. Trapman, J., Planta, R.J. and Raué, H.A. (1976) Maturation of ribosomes in yeast. II. Position of the low molecular weight rRNA species in the maturation process. Biochim. Biophys. Acta, 442, 275-284.
9. Gerbi, S.A. and Borovjagin, A.V. (2004) Pre-ribosomal RNA processing in multicellular organisms. In Olson, M.O.J. (ed.), Nucleolus. Landes Biosciences/Eurekah.com, Georgetown, pp. 170-198.
10. Kressler, D., Linder, P. and de la Cruz, J. (1999) Protein transacting factors involved in ribosome biogenesis in Saccharomyces cerevisiae. Mol. Cell. Biol., 19, 7897-7912.
11. Venema, J. and Tollervey, D. (1999) Ribosome synthesis in Saccharomyces cerevisiae. Annu. Rev. Genet., 33, 261-311.
12. Nomura, M., Nogi, Y. and Oakes, M. (2004) Transcription of rDNA in the yeast Saccharomyces cerevisiae. In Olson, M.O.J. (ed.), Nucleolus. Landes Bioscience/Eurekah.com, Georgetown, pp. 128-153.
13. Henras, A.K., Dez, C. and Henry, Y. (2004) RNA structure and function in C/D and H/ACA s(no)RNPs. Curr. Opin. Struct. Biol., 14, 335-343.
14. Kiss, T. (2002) Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell, 109, 145-148.
15. Fromont-Racine, M., Senger, B., Saveanu, C. and Fasiolo, F. (2003) Ribosome assembly in eukaryotes. Gene, 313, 17-42.
16. de la Cruz, J., Kressler, D. and Linder, P. (2004) In Olson, M.O.J. (ed.), Nucleolus. Kluwer academic. Landes Bioscience/eurekah.com, Georgetown, pp. 258-285.
17. Kressler, D., Hurt, E. and Bassler, J. (2009) Driving ribosome assembly. Biochim. Biophys. Acta, doi: 10.1016/j.bbamcr.2009.10.009.
18. Grandi, P., Rybin, V., Bassler, J., Petfalski, E., Strauss, D., Marzioch, M., Schäfer, T., Kuster, B., Tschochner, H., Tollervey, D. et al. (2002) 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol. Cell, 10, 105-115.
19. Dragon, F., Gallagher, J.E., Compagnone-Post, P.A., Mitchell, B.M., Porwancher, K.A., Wehner, K.A., Wormsley, S., Settlage, R.E., Shabanowitz, J., Osheim, Y. et al. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature, 417, 967-970.
20. Schäfer, T., Strauss, D., Petfalski, E., Tollervey, D. and Hurt, E. (2003) The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes. EMBO J., 22, 1370-1380.
21. Harnpicharnchai, P., Jakovljevic, J., Horsey, E., Miles, T., Roman, J., Rout, M., Meagher, D., Imai, B., Guo, Y., Brame, C.J. et al. (2001) Composition and functional characterization of yeast 66S ribosome assembly intermediates. Mol. Cell, 8, 505-515.
22. Bassler, J., Grandi, P., Gadal, O., Lessmann, T., Petfalski, E., Tollervey, D., Lechner, J. and Hurt, E. (2001) Identification of a 60S preribosomal particle that is closely linked to nuclear export. Mol. Cell, 8, 517-529.
23. Nissan, T.A., Bassler, J., Petfalski, E., Tollervey, D. and Hurt, E. (2002) 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm. EMBO J., 21, 5539-5547.
24. Milkereit, P., Gadal, O., Podtelejnikov, A., Trumtel, S., Gas, N., Petfalski, E., Tollervey, D., Mann, M., Hurt, E. and Tschochner, H. (2001) Maturation and intranuclear transport of pre-ribosomes requires Noc proteins. Cell, 105, 499-509.
25. Kallstrom, G., Hedges, J. and Johnson, A. (2003) The putative GTPases Nog1p and Lsg1p are required for 60S ribosomal subunit biogenesis and are localized to the nucleus and cytoplasm, respectively. Mol. Cell. Biol., 23, 4344-4355.
26. Trapman, J., Retèl, J. and Planta, R.J. (1975) Ribosomal precursor particles from yeast. Exp. Cell Res., 90, 95-104.
27. Dez, C. and Tollervey, D. (2004) Ribosome synthesis meets the cell cycle. Curr. Opin. Microbiol., 7, 631-637.
28. Schäfer, T., Maco, B., Petfalski, E., Tollervey, D., Bottcher, B., Aebi, U. and Hurt, E. (2006) Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit. Nature, 441, 651-655.
29. Lebreton, A., Rousselle, J.C., Lenormand, P., Namane, A., Jacquier, A., Fromont-Racine, M. and Saveanu, C. (2008) 60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes. Nucleic Acids Res., 36, 4988-4999.
30. Saveanu, C., Namane, A., Gleizes, P.E., Lebreton, A., Rousselle, J.C., Noaillac-Depeyre, J., Gas, N., Jacquier, A. and Fromont-Racine, M. (2003) Sequential protein association with nascent 60S ribosomal particles. Mol. Cell. Biol., 23, 4449-4460.
31. van Nues, R.W., Venema, J., Rientjes, J.M., Dirks-Mulder, A. and Raué, H.A. (1995) Processing of eukaryotic pre-rRNA: the role of the transcribed spacers. Biochem Cell Biol, 73, 789-801.
32. Côté, C.A., Greer, C.L. and Peculis, B.A. (2002) Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast. RNA, 8, 786-797.
33. Woolford, J.L. Jr and Warner, J.R. (1991) The ribosome and its synthesis. In Broach, J.R., Pringle, J.R. and Jones, E.W. (eds), The Molecular and Cellular Biology of the yeast Saccharomyces: Genome Dynamics, Protein Synthesis, and Energetics, Vol. 1. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 587-626.
34. Ferreira-Cerca, S., Poll, G., Gleizes, P.E., Tschochner, H. and Milkereit, P. (2005) Roles of eukaryotic ribosomal proteins in maturation and transport of pre-18S rRNA and ribosome function. Mol. Cell, 20, 263-275.
35. Pöll, G., Braun, T., Jakovljevic, J., Neueder, A., Jakob, S., Woolford, J.L. Jr, Tschochner, H. and Milkereit, P. (2009) rRNA maturation in yeast cells depleted of large ribosomal subunit proteins. PLoS ONE, 4, e8249.
36. Deshmukh, M., Tsay, Y.-F., Paulovich, A.G. and Woolford, J.L. Jr (1993) Yeast ribosomal protein L1 is required for the stability of newly synthesized 5S rRNA and the assembly of 60S ribosomal subunits. Mol. Cell. Biol., 13, 2835-2845.
37. Deshmukh, M., Stark, J., Yeh, L.C., Lee, J.C. and Woolford, J.L. Jr (1995) Multiple regions of yeast ribosomal protein L1 are important for its interaction with 5 S rRNA and assembly into ribosomes. J. Biol. Chem., 270, 30148-30156.
38. Rodríguez-Mateos, M., García-Go' mez, J.J., Francisco-Velilla, R., Remacha, M., de la Cruz, J. and Ballesta, J.P.G. (2009) Role and dynamics of the ribosomal protein P0 and its related trans-acting factor Mrt4 during ribosome assembly in Saccharomyces cerevisiae. Nucleic Acids Res., 37, 7519-7532.
39. Martín-Marcos, P., Hinnebusch, A.G. and Tamame, M. (2007) Ribosomal protein L33 is required for ribosome biogenesis, subunit joining, and repression of GCN4 translation. Mol. Cell. Biol., 27, 5968-5985.
40. van Beekvelt, C.A., de Graaff-Vincent, M., Faber, A.W., van't Riet, J., Venema, J. and Raué, H.A. (2001) All three functional domains of the large ribosomal subunit protein L25 are required for both early and late pre-rRNA processing steps in Saccharomyces cerevisiae. Nucleic Acids Res., 29, 5001-5008.
41. Rosado, I.V., Kressler, D. and de la Cruz, J. (2007) Functional analysis of Saccharomyces cerevisiae ribosomal protein Rpl3p in ribosome synthesis. Nucleic Acids Res., 35, 4203-4213.
42. Krogan, N.J., Cagney, G., Yu, H., Zhong, G., Guo, X., Ignatchenko, A., Li, J., Pu, S., Datta, N., Tikuisis, A.P. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature, 440, 637-643.
43. Gavin, A.C., Bosche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J.M., Michon, A.M., Cruciat, C.M. et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature, 415, 141-147.
44. Lastick, S.M. (1980) The assembly of ribosomes in HeLa cell nucleoli. Eur. J. Biochem., 113, 175-182.
45. Kruiswijk, T., Planta, R.J. and Krop, J.M. (1978) The course of the assembly of ribosomal subunits in yeast. Biochim. Biophys. Acta, 517, 378-389.
46. Ferreira-Cerca, S., Poll, G., Kuhn, H., Neueder, A., Jakob, S., Tschochner, H. and Milkereit, P. (2007) Analysis of the in vivo assembly pathway of eukaryotic 40S ribosomal proteins. Mol. Cell, 28, 446-457.
47. Klein, D.J., Moore, P.B. and Steitz, T.A. (2004) The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit. J. Mol. Biol., 340, 141-177.
48. Kramer, G., Boehringer, D., Ban, N. and Bukau, B. (2009) The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins. Nature Struct. Mol. Biol., 16, 589-597.
49. Becker, T., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K. et al. (2009) Structure of monomeric yeast and mammalian Sec61 complexes interacting with the translating ribosome. Science, 326, 1369-1373.
50. Zhong, T. and Arndt, K.T. (1993) The yeast SIS1 protein, a DnaJ homolog, is required for the initiation of translation. Cell, 73, 1175-1186.
51. Amsterdam, A., Sadler, K.C., Lai, K., Farrington, S., Bronson, R.T., Lees, J.A. and Hopkins, N. (2004) Many ribosomal protein genes are cancer genes in zebrafish. PLoS Biol., 2, E139.
52. Brachmann, C.B., Davies, A., Cost, G.J., Caputo, E., Li, J., Hieter, P. and Boeke, J.D. (1998) Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast, 14, 115-132.
53. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl, K. (1994) Saccharomyces cerevisiae. Current Protocols in Molecular Biology, Vol. 2. John Wiley & Sons, Inc., New York, NY, pp. 13.10.11-13.14.17.
54. Kaiser, C., Michaelis, S. and Mitchell, A. (1994) Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
55. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
56. Kressler, D., de la Cruz, J., Rojo, M. and Linder, P. (1998) Dbp6p is an essential putative ATP-dependent RNA helicase required for 60S-ribosomal-subunit assembly in Saccharomyces cerevisiae. Mol. Cell. Biol., 18, 1855-1865.
57. Frey, S., Pool, M. and Seedorf, M. (2001) Scp160p, an RNA-binding, polysome-associated protein, localizes to the endoplasmic reticulum of Saccharomyces cerevisiae in a microtubule-dependent manner. J. Biol. Chem., 276, 15905-15912.
58. Petitjean, A., Bonneaud, N. and Lacroute, F. (1995) The duplicated Saccharomyces cerevisiae gene SSM1 encodes a eucaryotic homolog of the eubacterial and archeabacterial L1 ribsomal protein. Mol. Cell. Biol., 15, 5071-5081.
59. Milkereit, P., Strauss, D., Bassler, J., Gadal, O., Kuhn, H., Schutz, S., Gas, N., Lechner, J., Hurt, E. and Tschochner, H. (2003) A Noc-complex specifically involved in the formation and nuclear export of ribosomal 40S subunits. J. Biol. Chem., 278, 4072-4081.
60. Venema, J., Planta, R.J. and Raué, H.A. (1998) In vivo mutational analysis of ribosomal RNA in Saccharomyces cerevisiae. In Martin, R. (ed.), Protein Synthesis: Methods and Protocols, Vol. 77. Humana Press, Totowa, NJ, pp. 257-270.
61. Rosado, I.V., Dez, C., Lebaron, S., Caizergues-Ferrer, M., Henry, Y. and de la Cruz, J. (2006) Characterization of Saccharomyces cerevisiae Npa2p (Urb2p) reveals a low-molecular-mass complex containing Dbp6p, Npa1p (Urb1p), Nop8p, and Rsa3p involved in early steps of 60S ribosomal subunit biogenesis. Mol. Cell. Biol., 27, 1207-1221.
62. Gadal, O., Strauss, D., Kessl, J., Trumpower, B., Tollervey, D. and Hurt, E. (2001) Nuclear export of 60S ribosomal subunit depends on Xpo1p and requires a nuclear export sequence-containing factor, Nmd3p, that associates with the large subunit protein Rpl10p. Mol. Cell. Biol., 21, 3405-3415.
63. Belk, J.P., he, F. and Jacobson, A. (1999) Overexpression of truncated Nmd3p inhibits protein synthesis in yeast. RNA, 5, 1055-1070.
64. Hedges, J., West, M. and Johnson, A.W. (2005) Release of the export adapter, Nmd3p, from the 60S ribosomal subunit requires Rpl10p and the cytoplasmic GTPase Lsg1p. EMBO J., 24, 567-579.
65. Rodrigues, F., van Hemert, M., Steensma, H.Y., Corte-Real, M. and Leao, C. (2001) Red fluorescent protein (DsRed) as a reporter in Saccharomyces cerevisiae. J. Bacteriol., 183, 3791-3794.
66. Dez, C., Froment, C., Noaillac-Depeyre, J., Monsarrat, B., Caizergues-Ferrer, M. and Henry, Y. (2004) Npa1p, a component of very early pre-60S ribosomal particles, associates with a subset of small nucleolar RNPs required for peptidyl transferase center modification. Mol. Cell. Biol., 24, 6324-6337.
67. Winey, M., Goetsch, L., Baum, P. and Byers, B. (1991) MPS1 and MPS2: novel yeast genes defining distinct steps of spindle pole body duplication. J. Cell. Biol., 114, 745-754.
68. Warner, J.R. (1989) Synthesis of ribosomes in Saccharomyces cerevisiae. Microbiol. Rev., 53, 256-271.
69. Warner, J.R. (1999) The economics of ribosome biosynthesis in yeast. Trends Biochem. Sci., 24, 437-440.
70. Spingola, M., Grate, L., Haussler, D. and Ares, M. Jr (1999) Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae. RNA, 5, 221-234.
71. Holstege, F.C., Jennings, E.G., Wyrick, J.J., Lee, T.I., Hengartner, C.J., Green, M.R., Golub, T.R., Lander, E.S. and Young, R.A. (1998) Dissecting the regulatory circuitry of a eukaryotic genome. Cell, 95, 717-728.
72. Hofer, A., Bussiere, C. and Johnson, A.W. (2007) Mutational analysis of the ribosomal protein Rpl10 from yeast. J. Biol. Chem., 282, 32630-32639.
73. West, M., Hedges, J.B., Chen, A. and Johnson, A.W. (2005) Defining the order in which Nmd3p and Rpl10p load onto nascent 60S ribosomal subunits. Mol. Cell. Biol., 25, 3802-3813.
74. Kemmler, S., Occhipinti, L., Veisu, M. and Panse, V.G. (2009) Yvh1 is required for a late maturation step in the 60S biogenesis pathway. J. Cell. Biol., 186, 863-880.
75. Lo, K.Y., Li, Z., Wang, F., Marcotte, E.M. and Johnson, A.W. (2009) Ribosome stalk assembly requires the dual-specificity phosphatase Yvh1 for the exchange of Mrt4 with P0. J. Cell. Biol., 186, 849-862.
76. Kosugi, S., Hasebe, M., Tomita, M. and Yanagawa, H. (2009) Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs. Proc. Natl. Acad. Sci. USA, 106, 10171-10176.
77. Neville, M. and Rosbash, M. (1999) The NES-Crm1p export pathway is not a major mRNA export route in Saccharomyces cerevisiae. EMBO J., 18, 3746-3756.
78. Ho, J.H.-N., Kallstrom, G. and Johnson, A.W. (2000) Nmd3p is a Crm1p-dependent adapter protein for nuclear export of the large ribosomal subunit. J. Cell. Biol., 151, 1057-1066.
79. Lacombe, T., García-Gómez, J.J., de la Cruz, J., Roser, D., Hurt, E., Linder, P. and Kressler, D. (2009) Linear ubiquitin fusion to Rps31 and its subsequent cleavage are required for the efficient production and functional integrity of 40S ribosomal subunits. Mol. Microbiol., 72, 69-84.
80. Yu, L., Castillo, L.P., Mnaimneh, S., Hughes, T.R. and Brown, G.W. (2006) A survey of essential gene function in the yeast cell division cycle. Mol. Biol. Cell, 17, 4736-4747.
81. Bernstein, K.A., Bleichert, F., Bean, J.M., Cross, F.R. and Baserga, S.J. (2007) Ribosome biogenesis is sensed at the start cell cycle checkpoint. Mol. Biol. Cell, 18, 953-964.
82. Lee, J.C. and Henry, B. (1982) Binding of rat ribosomal proteins to yeast 5.8S ribosomal ribonucleic acid. Nucleic Acids Res., 10, 2199-2207.
83. Simoff, I., Moradi, H. and Nygard, O. (2009) Functional characterization of ribosomal protein L15 from Saccharomyces cerevisiae. Current Genet., 55, 111-125.
84. Rotenberg, M., Moritz, M. and Woolford, J.L. Jr (1988) Depletion of Saccharomyces cerevisiae ribosomal protein L16 causes a decrease in 60S ribosomal subunits and formation of half-mer polysomes. Genes Dev., 2, 160-172.
85. Lucioli, A., Presutti, C., Ciafre, S., Caffarelli, E., Fragapane, P. and Bozzoni, I. (1988) Gene dosage alteration of L2 ribosomal protein genes in Saccharomyces cerevisiae: effects on ribosome synthesis. Mol. Cell. Biol., 8, 4792-4798.
86. Gadal, O., Strauss, D., Braspenning, J., Hoepfner, D., Petfalski, E., Philippsen, P., Tollervey, D. and Hurt, E. (2001) A nuclear AAA-type ATPase (Rix7p) is required for biogenesis and nuclear export of 60S ribosomal subunits. EMBO J., 20, 3695-3704.
87. Chamberlain, J.R., Lee, Y., Lane, W.S. and Engelke, D.R. (1998) Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP. Genes Dev., 12, 1678-1690.
88. Chu, S., Archer, R.H., Zengel, J.M. and Lindahl, L. (1994) The RNA of RNase MRP is required for normal processing of ribosomal RNA. Proc. Natl Acad. Sci. USA, 91, 659-663.
89. Burger, F., Daugeron, M.-C. and Linder, P. (2000) Dbp10p, a putative RNA helicase from Saccharomyces cerevisiae required for ribosome biogenesis. Nucleic Acids Res., 28, 2315-2323.
90. Saveanu, C., Rousselle, J.C., Lenormand, P., Namane, A., Jacquier, A. and Fromont-Racine, M. (2007) The p21-activated protein kinase inhibitor Skb15 and its budding yeast homologue are 60S ribosome assembly factors. Mol. Cell. Biol., 27, 2897-2909.
91. Zanchin, N.I.T., Roberts, P., DeSilva, A., Sherman, F. and Goldfarb, D.S. (1997) Saccharomyces cerevisiae Nip7p is required for efficient 60S ribosome subunit biogenesis. Mol. Cell. Biol., 17, 5001-5015.
92. Hong, B., Brockenbrough, J.S., Wu, P. and Aris, J.P. (1997) Nop2p is required for pre-rRNA processing and 60S ribosome subunit synthesis in yeast. Mol. Cell. Biol., 17, 378-388.
93. Russell, I.D. and Tollervey, D. (1992) NOP3 is an essential yeast protein which is required for pre-rRNA processing. J. Cell Biol., 119, 737-747.
94. Kressler, D., Rojo, M., Linder, P. and de la Cruz, J. (1999) Spb1p is a putative methyltransferase required for 60S ribosomal subunit biogenesis in Saccharomyces cerevisiae. Nucleic Acids Res., 27, 4598-4608.
95. de la Cruz, J., Kressler, D., Rojo, M., Tollervey, D. and Linder, P. (1998) Spb4p, an essential putative RNA helicase, is required for a late step in the assembly of 60S ribosomal subunits in Saccharomyces cerevisiae. RNA, 4, 1268-1281.
96. van Beekvelt, C.A., Kooi, E.A., de Graaff-Vincent, M., Riet, J., Venema, J. and Raué, H.A. (2000) Domain III of Saccharomyces cerevisiae 25 S ribosomal RNA: its role in binding of ribosomal protein L25 and 60S subunit formation. J. Mol. Biol., 296, 7-17.
97. Rutgers, C.A., Rientjes, J.M., van't Riet, J. and Raue, H.A. (1991) rRNA binding domain of yeast ribosomal protein L25. Identification of its borders and a key leucine residue. J. Mol. Biol., 218, 375-385.
98. Peculis, B.A. and Greer, C.L. (1998) The structure of the ITS2-proximal stem is required for pre-rRNA processing in yeast. RNA, 4, 1610-1622.
99. Côté, C.A. and Peculius, B.A. (2001) Role of the ITS2-proximal stem and evidence for indirect recognition of processing sites in pre-rRNA processing in yeast. Nucleic Acids Res., 29, 2106-2116.
100. Pertschy, B., Schneider, C., Gnadig, M., Schafer, T., Tollervey, D. and Hurt, E. (2009) RNA helicase Prp43 and its co-factor Pfa1 promote 20S to 18S rRNA processing catalyzed by the endonuclease Nob1. J. Biol. Chem., 284, 35079-35091.
101. Jakovljevic, J., de Mayolo, P.A., Miles, T.D., Nguyen, T.M., Leger-Silvestre, I., Gas, N. and Woolford, J.L. Jr (2004) The carboxy-terminal extension of yeast ribosomal protein S14 is necessary for maturation of 43S preribosomes. Mol. Cell, 14, 331-342.
102. Tabb-Massey, A., Caffrey, J.M., Logsden, P., Taylor, S., Trent, J.O. and Ellis, S.R. (2003) Ribosomal proteins Rps0 and Rps21 of Saccharomyces cerevisiae have overlapping functions in the maturation of the 30 end of 18S rRNA. Nucleic Acids Res., 31, 6798-6805.
103. Thomson, E. and Tollervey, D. (2005) Nop53p is required for late 60S ribosome subunit maturation and nuclear export in yeast. RNA, 11, 1215-1224.
104. Gadal, O., Strauss, D., Petfalski, E., Gleizes, P.E., Gas, N., Tollervey, D. and Hurt, E. (2002) Rlp7p is associated with 60S preribosomes, restricted to the granular component of the nucleolus, and required for pre-rRNA processing. J. Cell Biol., 157, 941-951.
105. Hung, N.J., Lo, K.Y., Patel, S.S., Helmke, K. and Johnson, A.W. (2008) Arx1 is a nuclear export receptor for the 60S ribosomal subunit in yeast. Mol. Biol. Cell, 19, 735-744.
106. Bradatsch, B., Katahira, J., Kowalinski, E., Bange, G., Yao, W., Sekimoto, T., Baumgartel, V., Boese, G., Bassler, J., Wild, K. et al. (2007) Arx1 functions as an unorthodox nuclear export receptor for the 60S preribosomal subunit. Mol. Cell, 27, 767-779.
107. Hung, N.J. and Johnson, A.W. (2006) Nuclear recycling of the pre-60S ribosomal subunit-associated factor Arx1 depends on Rei1 in Saccharomyces cerevisiae. Mol. Cell. Biol., 26, 3718-3727.
108. Chen, I.J., Wang, I.A., Tai, L.R. and Lin, A. (2008) The role of expansion segment of human ribosomal protein L35 in nuclear entry, translation activity, and endoplasmic reticulum docking. Biochem. Cell Biol., 86, 271-277.
109. Pichon, J., Marvaldi, J. and Marchis-Mouren, G. (1975) The in vivo order of protein addition in the course of Escherichia coli 30 S and 50 S subunit biogenesis. J. Mol. Biol., 96, 125-137.
110. Nierhaus, K.H., Bordasch, K. and Homann, H.E. (1973) Ribosomal proteins. XLIII. In vivo assembly of Escherichia coli ribosomal proteins. J. Mol. Biol., 74, 587-597.
111. Jorgensen, P., Rupes, I., Sharom, J.R., Schneper, L., Broach, J.R. and Tyers, M. (2004) A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size. Genes Dev., 18, 2491-2505.