New L-Amino acid ligases catalyzing oligopeptide synthesis from various microorganisms

Bioscience, Biotechnology and Biochemistry

Volumn 74, Issue 8, 2010, Pages 1572-1577

  Arai, Toshinobu ^a   Kino, Kuniki ^a  

^a WASEDA UNIVERSITY   (Japan)

Author keywords

In silico analysis; L amino acid ligase; Oligopeptide; Peptide synthesis

Indexed keywords

AMINO ACID SEQUENCE; AROMATIC AMINO ACID; BACILLUS SUBTILIS; BIFIDOBACTERIUM ADOLESCENTIS; COMMONLY USED; DIPEPTIDE; HYPOTHETICAL PROTEIN; IN-SILICO; L-AMINO ACID LIGASE; L-AMINO ACIDS; LIGASES; NEW MEMBERS; OLIGOPEPTIDE; OLIGOPEPTIDES; PEPTIDE SYNTHESIS; RECOMBINANT PROTEIN; STREPTOCOCCUS PNEUMONIAE;

BACTERIOLOGY; ENZYMES; ORGANIC ACIDS; PEPTIDES;

AMINO ACIDS;

AMINO ACID; DIPEPTIDE; LIGASE; OLIGOPEPTIDE;

ARTICLE; BACTERIUM; BIOCATALYSIS; BIOLOGY; BIOSYNTHESIS; CHEMISTRY; METABOLISM; MOLECULAR WEIGHT;

AMINO ACIDS; BACTERIA; BIOCATALYSIS; COMPUTATIONAL BIOLOGY; DIPEPTIDES; LIGASES; MOLECULAR WEIGHT; OLIGOPEPTIDES;

BACILLUS SUBTILIS; BIFIDOBACTERIUM ADOLESCENTIS; STREPTOCOCCUS PNEUMONIAE;

EID: 77956029899     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1271/bbb.100148     Document Type: Article

References (28)

1. Yagasaki M and Hashimoto S, Appl. Microbiol. Biotechnol., 81, 13-22 (2008).
2. Fan C, Moews PC, Shi Y, Walsh CT, and Knox JR, Proc. Natl. Acad. Sci. USA, 92, 1172-1176 (1995).
3. Murzin AG, Curr. Opin. Struct. Biol., 6, 386-394 (1996).
4. Tabata K, Ikeda H, and Hashimoto S, J. Bacteriol., 187, 5195-5202 (2005).
5. Tabata K and Hashimoto S, Appl. Environ. Microbiol., 73, 6378-6385 (2007).
6. Kino K, Nakazawa Y, and Yagasaki M, Biochem. Biophys. Res. Commun., 371, 536-540 (2008).
7. Kino K, Noguchi A, and Yagasaki M, J. Biosci. Bioeng., 106, 313-315 (2008).
8. Arai T and Kino K, Biosci. Biotechnol. Biochem., 72, 3048-3050 (2008).
9. Kino K, Noguchi A, Arai T, and Yagasaki M, J. Biosci. Bioeng., 110, 39-41 (2010).
10. Kino K, Kotanaka Y, Arai T, and Yagasaki M, Biosci. Biotechnol. Biochem., 73, 901-907 (2009).
11. Kino K, Arai T, and Tateiwa D, Biosci. Biotechnol. Biochem., 74, 129-134 (2010).
12. Kugler M, Loffler W, Rapp C, Kern A, and Jung G, Arch. Microbiol., 153, 276-281 (1990).
13. Fields SC, Tetrahedron, 55, 12237-12273 (1999).
14. Rapp C, Jung G, Kugler M, and Loeffler W, Liebigs Ann. Chem., 1988, 655-661 (1988).
15. Stein T, Mol. Microbiol., 56, 845-857 (2005).
16. Johnson M, Zaretskaya I, Raytselis Y, Merezhuk Y, McGinnis S, and Madden TL, Nucleic Acids Res., 36, W5-W9 (2008).
17. Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, and Bateman A, Nucleic Acids Res., 36, D281-D288 (2008).
18. Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, and Yeats C, Nucleic Acids Res., 37, D211-D215 (2008).
19. Sambrook J and Russell WD, "Molecular Cloning, a Laboratory Manual" 3rd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor (2001).
20. Laemmli UK, Nature, 227, 680-685 (1970).
21. Arai T and Kino K, Appl. Microbiol. Biotechnol., 81, 69-78 (2008).
22. Bormann C, Möhrle V, and Bruntner C, J. Bacteriol., 178, 1216-1218 (1996).
23. Bruntner C, Lauer B, Schwarz W, Möhrle V, and Bormann C, Mol. Gen. Genet., 262, 102-114 (1999).
24. Lauer B, Russwurm R, Schwarz W, Kálmánczhelyi A, Bruntner C, Rosemeier A, and Bormann C, Mol. Gen. Genet., 264, 662-673 (2001).
25. Li Y, Zeng H, and Tan H, Curr. Microbiol., 49, 128-132 (2004).
26. Wu J, Aluko RE, and Nakai S, J. Agric. Food Chem., 54, 732-738 (2006).
27. Takagi H, Shimoi H, Ueda H, and Amano H, Eur. J. Pharmacol., 55, 109-111 (1979).
28. Galperin MY and Koonin EV, Protein Sci., 6, 2639-2643 (1997).