Transcriptomic analyses of the avirulent protozoan parasite Trypanosoma rangeli

Molecular and Biochemical Parasitology

Volumn 174, Issue 1, 2010, Pages 18-25

  Grisard, Edmundo C ^a,f   Stoco, Patrícia H ^a,f   Wagner, Glauber ^a,b   Sincero, Thaís C M ^a   Rotava, Gianinna ^a   Rodrigues, Juliana B ^a   Snoeijer, Cristiane Q ^a   Koerich, Leonardo B ^a   Sperandio, Maísa M ^a   Bayer Santos, Ethel ^a   Fragoso, Stenio P ^c   Goldenberg, Samuel ^c   Triana, Omar ^d   Vallejo, Gustavo A ^e   Tyler, Kevin M ^f   Dávila, Alberto M R ^g   Steindel, Mário ^a  

^a FEDERAL UNIVERSITY OF SANTA CATARINA   (Brazil)

^b UNIVERSIDADE DO OESTE DE SANTA CATARINA   (Brazil)

^c INSTITUTO CARLOS CHAGAS   (Brazil)

^d UNIVERSIDAD DE ANTIOQUIA   (Colombia)

^e UNIVERSIDAD DEL TOLIMA   (Colombia)

^f UNIVERSITY OF EAST ANGLIA   (United Kingdom)

^g INSTITUTO OSWALDO CRUZ   (Brazil)

Author keywords

EST; ORESTES; Transcriptome; Trypanosoma rangeli

Indexed keywords

RNA;

ARTICLE; COMPARATIVE STUDY; EPIMASTIGOTE; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE SEQUENCE; KINETOPLASTIDA; MITOCHONDRION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PARASITE VIRULENCE; PRIORITY JOURNAL; TRANSCRIPTOMICS; TRYPANOSOMA; TRYPANOSOMA CRUZI; TRYPOMASTIGOTE; UNINDEXED SEQUENCE;

DATABASES, GENETIC; DATABASES, NUCLEIC ACID; DNA TRANSPOSABLE ELEMENTS; DNA, MITOCHONDRIAL; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; OPEN READING FRAMES; PROTOZOAN PROTEINS; SEQUENCE ANALYSIS, DNA; TRYPANOSOMA; VIRULENCE FACTORS;

KINETOPLASTIDA; MAMMALIA; PROTOZOA; TRYPANOSOMA; TRYPANOSOMA CRUZI; TRYPANOSOMA RANGELI;

EID: 77955843380     PISSN: 01666851     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molbiopara.2010.06.008     Document Type: Article

References (72)

1. Berriman M., Ghedin E., Hertz-Fowler C., et al. The genome of the African trypanosome Trypanosoma brucei. Science 2005, 309(5733):416-422.
2. El-Sayed N.M., Myler P.J., Bartholomeu D.C., et al. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science 2005, 309(5733):409-415.
3. Grisard E.C., Steindel M., Guarneri A.A., Eger-Mangrich I., Campbell D.A., Romanha A.J. Characterization of Trypanosoma rangeli strains isolated in Central and South America: an overview. Mem Inst Oswaldo Cruz 1999, 94(2):203-209.
4. Guhl F., Vallejo G.A. Trypanosoma (Herpetosoma) rangeli Tejera, 1920: an updated review. Mem Inst Oswaldo Cruz 2003, 98(4):435-442.
5. Machado P.E., Eger-Mangrich I., Rosa G., Koerich L.B., Grisard E.C., Steindel M. Differential susceptibility of triatomines of the genus Rhodnius to Trypanosoma rangeli strains from different geographical origins. Int J Parasitol 2001, 31(5-6):632-634.
6. Cuervo C., Lopez M.C., Puerta C. The Trypanosoma rangeli histone H2A gene sequence serves as a differential marker for KP1 strains. Infect Genet Evol 2006, 6(5):401-409.
7. Da Silva F.M., Noyes H., Campaner M., et al. Phylogeny, taxonomy and grouping of Trypanosoma rangeli isolates from man, triatomines and sylvatic mammals from widespread geographical origin based on SSU and ITS ribosomal sequences. Parasitology 2004, 129(Pt 5):549-561.
8. Vallejo G.A., Guhl F., Carranza J.C., Moreno J., Triana O., Grisard E.C. Parity between kinetoplast DNA and mini-exon gene sequences supports either clonal evolution or speciation in Trypanosoma rangeli strains isolated from Rhodnius colombiensis, R. pallescens and R. prolixus in Colombia. Infect Genet Evol 2003, 3(1):39-45.
9. Puerta C.J., Sincero T.C., Stoco P.H., Cuervo C., Grisard E.C. Comparative analysis of Trypanosoma rangeli histone H2A gene intergenic region with distinct intraspecific lineage markers. Vector Borne Zoonotic Dis 2009, 9(5):449-456.
10. Urrea D.A., Carranza J.C., Cuba C.A., et al. Molecular characterisation of Trypanosoma rangeli strains isolated from Rhodnius ecuadoriensis in Peru, R. colombiensis in Colombia and R. pallescens in Panama, supports a co-evolutionary association between parasites and vectors. Infect Genet Evol 2005, 5(2):123-129.
11. Azambuja P., Ratcliffe N.A., Garcia E.S. Towards an understanding of the interactions of Trypanosoma cruzi and Trypanosoma rangeli within the reduviid insect host Rhodnius prolixus. An Acad Bras Cienc 2005, 77(3):397-404.
12. Azambuja P., Garcia E.S. Trypanosoma rangeli interactions within the vector Rhodnius prolixus: a mini review. Mem Inst Oswaldo Cruz 2005, 100(5):567-572.
13. De Stefani Marquez D., Rodrigues-Ottaiano C., Monica Oliveira R., et al. Susceptibility of different triatomine species to Trypanosoma rangeli experimental infection. Vector Borne Zoonotic Dis 2006, 6(1):50-56.
14. Schaub G.A. Parasitogenic alterations of vector behaviour. Int J Med Microbiol 2006, 296(Suppl 40):37-40.
15. Whitten M., Sun F., Tew I., et al. Differential modulation of Rhodnius prolixus nitric oxide activities following challenge with Trypanosoma rangeli, T. cruzi and bacterial cell wall components. Insect Biochem Mol Biol 2007, 37(5):440-452.
16. Coura J.R., Fernandes O., Arboleda M., et al. Human infection by Trypanosoma rangeli in the Brazilian Amazon. Trans R Soc Trop Med Hyg 1996, 90(3):278-279.
17. Saldana A., Samudio F., Miranda A., et al. Predominance of Trypanosoma rangeli infection in children from a Chagas disease endemic area in the west-shore of the Panama canal. Mem Inst Oswaldo Cruz 2005, 100(7):729-731.
18. Calzada J.E., Pineda V., Montalvo E., et al. Human trypanosome infection and the presence of intradomicile Rhodnius pallescens in the western border of the Panama Canal, Panama. Am J Trop Med Hyg 2006, 74(5):762-765.
19. Caballero Z.C., Sousa O.E., Marques W.P., Saez-Alquezar A., Umezawa E.S. Evaluation of serological tests to identify Trypanosoma cruzi infection in humans and determine cross-reactivity with Trypanosoma rangeli and Leishmania spp. Clin Vaccine Immunol 2007, 14(8):1045-1049.
20. de Moraes M.H., Guarneri A.A., Girardi F.P., et al. Different serological cross-reactivity of Trypanosoma rangeli forms in Trypanosoma cruzi-infected patients sera. Parasit Vectors 2008, 1(1):20.
21. Ivens A.C., Peacock C.S., Worthey E.A., et al. The genome of the kinetoplastid parasite, Leishmania major. Science 2005, 309(5733):436-442.
22. Peacock C.S., Seeger K., Harris D., et al. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Nat Genet 2007, 39(7):839-847.
23. Schottelius J. Neuraminidase fluorescence test for the differentiation of Trypanosoma cruzi and Trypanosoma rangeli. Trop Med Parasitol 1987, 38(4):323-327.
24. Steindel M., Pinto J.C., Toma H.K., Mangia R.H., Ribeiro-Rodrigues R., Romanha A.J. Trypanosoma rangeli (Tejera, 1920) isolated from a sylvatic rodent (Echimys dasythrix) in Santa Catarina Island, Santa Catarina State: first report of this trypanosome in southern Brazil. Mem Inst Oswaldo Cruz 1991, 86(1):73-79.
25. Koerich L.B., Emmanuelle-Machado P., Santos K., Grisard E.C., Steindel M. Differentiation of Trypanosoma rangeli: high production of infective Trypomastigote forms in vitro. Parasitol Res 2002, 88(1):21-25.
26. Snoeijer C.Q., Picchi G.F., Dambros B.P., et al. Trypanosoma rangeli transcriptome project: generation and analysis of expressed sequence tags. Kinetoplastid Biol Dis 2004, 3(1):1.
27. Dias Neto E., Correa R.G., Verjovski-Almeida S., et al. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Proc Natl Acad Sci USA 2000, 97(7):3491-3496.
28. Davila A.M., Lorenzini D.M., Mendes P.N., et al. GARSA: genomic analysis resources for sequence annotation. Bioinformatics 2005, 21(23):4302-4303.
29. Ewing B., Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 1998, 8(3):186-194.
30. Huang X., Madan A. CAP3: A DNA sequence assembly program. Genome Res 1999, 9(9):868-877.
31. Altschul S.F., Madden T.L., Schaffer A.A., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402.
32. Mulder N.J., Apweiler R., Attwood T.K., et al. New developments in the InterPro database. Nucleic Acids Res 2007, 35(Database issue):D224-D228.
33. Bateman A., Birney E., Durbin R., Eddy S.R., Finn R.D., Sonnhammer E.L. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Res 1999, 27(1):260-262.
34. Conesa A., Gotz S., Garcia-Gomez J.M., Terol J., Talon M., Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21(18):3674-3676.
35. Horton P., Park K.J., Obayashi T., et al. WoLF PSORT: protein localization predictor. Nucleic Acids Res 2007, 35(Web Server issue):W585-W587.
36. Emanuelsson O., Brunak S., von Heijne G., Nielsen H. Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2007, 2(4):953-971.
37. Schattner P., Brooks A.N., Lowe T.M. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res 2005, 33(Web Server issue):W686-W689.
38. Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., Sayers E.W. GenBank. Nucleic Acids Res 2009, 37(Database issue):D26-D31.
39. Stevens J., Gibson W. The evolution of salivarian trypanosomes. Mem Inst Oswaldo Cruz 1999, 94(2):225-228.
40. Verjovski-Almeida S., DeMarco R., Martins E.A., et al. Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni. Nat Genet 2003, 35(2):148-157.
41. Bringaud F., Biteau N., Melville S.E., et al. A new, expressed multigene family containing a hot spot for insertion of retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei. Eukaryot Cell 2002, 1(1):137-151.
42. Buschiazzo A., Cremona M.L., Campetella O., Frasch A.C., Sanchez D.O. Sequence of a Trypanosoma rangeli gene closely related to Trypanosoma cruzi trans-sialidase. Mol Biochem Parasitol 1993, 62(1):115-116.
43. Anez-Rojas N., Peralta A., Crisante G., et al. Trypanosoma rangeli expresses a gene of the group II trans-sialidase superfamily. Mol Biochem Parasitol 2005, 142(1):133-136.
44. Martinez J., Henriksson J., Rydaker M., Cazzulo J.J., Pettersson U. Genes for cysteine proteinases from Trypanosoma rangeli. FEMS Microbiol Lett 1995, 129(2-3):135-141.
45. Meirelles M.N., Juliano L., Carmona E., et al. Inhibitors of the major cysteinyl proteinase (GP57/51) impair host cell invasion and arrest the intracellular development of Trypanosoma cruzi in vitro. Mol Biochem Parasitol 1992, 52(2):175-184.
46. Schenkman S., Ferguson M.A., Heise N., de Almeida M.L., Mortara R.A., Yoshida N. Mucin-like glycoproteins linked to the membrane by glycosylphosphatidylinositol anchor are the major acceptors of sialic acid in a reaction catalyzed by trans-sialidase in metacyclic forms of Trypanosoma cruzi. Mol Biochem Parasitol 1993, 59(2):293-303.
47. Eger-Mangrich I., de Oliveira M.A., Grisard E.C., De Souza W., Steindel M. Interaction of Trypanosoma rangeli Tejera, 1920 with different cell lines in vitro. Parasitol Res 2001, 87(6):505-509.
48. Etges R., Bouvier J., Bordier C. The major surface protein of Leishmania promastigotes is a protease. J Biol Chem 1986, 261(20):9098-9101.
49. Santos A.L., Branquinha M.H., D'Avila-Levy C.M. The ubiquitous gp63-like metalloprotease from lower trypanosomatids: in the search for a function. An Acad Bras Cienc 2006, 78(4):687-714.
50. Morty R.E., Pelle R., Vadasz I., Uzcanga G.L., Seeger W., Bubis J. Oligopeptidase B from Trypanosoma evansi. A parasite peptidase that inactivates atrial natriuretic factor in the bloodstream of infected hosts. J Biol Chem 2005, 280(12):10925-10937.
51. Grellier P., Vendeville S., Joyeau R., et al. Trypanosoma cruzi prolyl oligopeptidase Tc80 is involved in nonphagocytic mammalian cell invasion by trypomastigotes. J Biol Chem 2001, 276(50):47078-47086.
52. Cordero E.M., Gentil L.G., Crisante G., et al. Expression of GP82 and GP90 surface glycoprotein genes of Trypanosoma cruzi during in vivo metacyclogenesis in the insect vector Rhodnius prolixus. Acta Trop 2008, 105(1):87-91.
53. Low H.P., Tarleton R.L. Molecular cloning of the gene encoding the 83kDa amastigote surface protein and its identification as a member of the Trypanosoma cruzi sialidase superfamily. Mol Biochem Parasitol 1997, 88(1-2):137-149.
54. Stuart K.D., Schnaufer A., Ernst N.L., Panigrahi A.K. Complex management: RNA editing in trypanosomes. Trends Biochem Sci 2005, 30(2):97-105.
55. Madison-Antenucci S., Grams J., Hajduk S.L. Editing machines: the complexities of trypanosome RNA editing. Cell 2002, 108(4):435-438.
56. Cerqueira G.C., DaRocha W.D., Campos P.C., Zouain C.S., Teixeira S.M. Analysis of expressed sequence tags from Trypanosoma cruzi amastigotes. Mem Inst Oswaldo Cruz 2005, 100(4):385-389.
57. Aguero F., Abdellah K.B., Tekiel V., Sanchez D.O., Gonzalez A. Generation and analysis of expressed sequence tags from Trypanosoma cruzi trypomastigote and amastigote cDNA libraries. Mol Biochem Parasitol 2004, 136(2):221-225.
58. Porcel B.M., Tran A.N., Tammi M., et al. Gene survey of the pathogenic protozoan Trypanosoma cruzi. Genome Res 2000, 10(8):1103-1107.
59. Verdun R.E., Di Paolo N., Urmenyi T.P., Rondinelli E., Frasch A.C., Sanchez D.O. Gene discovery through expressed sequence Tag sequencing in Trypanosoma cruzi. Infect Immun 1998, 66(11):5393-5398.
60. DaRocha W.D., Bartholomeu D.C., Macedo C.D., et al. Characterization of cDNA clones encoding ribonucleoprotein antigens expressed in Trypanosoma cruzi amastigotes. Parasitol Res 2002, 88(4):292-300.
61. Urbina J.A. Specific treatment of Chagas disease: current status and new developments. Curr Opin Infect Dis 2001, 14(6):733-741.
62. Hankins E.G., Gillespie J.R., Aikenhead K., Buckner F.S. Upregulation of sterol C14-demethylase expression in Trypanosoma cruzi treated with sterol biosynthesis inhibitors. Mol Biochem Parasitol 2005, 144(1):68-75.
63. Silva D.T., de Nazareth S.L., dM M., Almeida D., Urbina J.A., Pereira M.C. Cytoskeleton reassembly in cardiomyocytes infected by Trypanosoma cruzi is triggered by treatment with ergosterol biosynthesis inhibitors. Int J Antimicrob Agents 2006, 27(6):530-537.
64. Teixeira S.M., daRocha W.D. Control of gene expression and genetic manipulation in the Trypanosomatidae. Genet Mol Res 2003, 2(1):148-158.
65. D'Alessandro A.S.N. Trypanosoma rangeli. Protozoal diseases 1999, 398-412. Arnold, London. G. Hm (Ed.).
66. Galperin M.Y., Koonin E.V. 'Conserved hypothetical' proteins: prioritization of targets for experimental study. Nucleic Acids Res 2004, 32(18):5452-5463.
67. Ochaya S., Respuela P., Simonsson M., et al. Characterization of a Trypanosoma cruzi acetyltransferase: cellular location, activity and structure. Mol Biochem Parasitol 2007, 152(2):123-131.
68. Jones D., Mehlert A., Ferguson M.A. The N-glycan glucosidase system in Trypanosoma brucei. Biochem Soc Trans 2004, 32(Pt 5):766-768.
69. Araujo A.F., de Alencar B.C., Vasconcelos J.R., et al. CD8+-T-cell-dependent control of Trypanosoma cruzi infection in a highly susceptible mouse strain after immunization with recombinant proteins based on amastigote surface protein 2. Infect Immun 2005, 73(9):6017-6025.
70. Claser C., Espindola N.M., Sasso G., Vaz A.J., Boscardin S.B., Rodrigues M.M. Immunologically relevant strain polymorphism in the Amastigote Surface Protein 2 of Trypanosoma cruzi. Microbes Infect 2007, 9(8):1011-1019.
71. Marciano D., Maugeri D.A., Cazzulo J.J., Nowicki C. Functional characterization of stage-specific aminotransferases from trypanosomatids. Mol Biochem Parasitol 2009, 166(2):172-182.
72. Bontempi E.J., Garcia G.A., Buschiazzo A., et al. The tyrosine aminotransferase from Trypanosoma rangeli: sequence and genomic characterization. FEMS Microbiol Lett 2000, 189(2):253-257.