-
1
-
-
0033539175
-
Internet: diameter of the world-wide web
-
Albert R., Jeong H., Barabási A.L. Internet: diameter of the world-wide web. Nature 1999, 401:130-131.
-
(1999)
Nature
, vol.401
, pp. 130-131
-
-
Albert, R.1
Jeong, H.2
Barabási, A.L.3
-
2
-
-
0037686112
-
The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster
-
Albert R., Othmer H.G. The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster. J. Theor. Biol. 2003, 223:1-18.
-
(2003)
J. Theor. Biol.
, vol.223
, pp. 1-18
-
-
Albert, R.1
Othmer, H.G.2
-
3
-
-
0141903547
-
Boolean dynamics of networks with scale-free topology
-
Aldana M. Boolean dynamics of networks with scale-free topology. Physica D 2003, 185:45-66.
-
(2003)
Physica D
, vol.185
, pp. 45-66
-
-
Aldana, M.1
-
4
-
-
33847650979
-
Robustness and evolvability in genetic regulatory networks
-
Aldana M., Balleza E., Kauffman S.A., Resendiz O. Robustness and evolvability in genetic regulatory networks. J. Theor. Biol. 2007, 245:433-448.
-
(2007)
J. Theor. Biol.
, vol.245
, pp. 433-448
-
-
Aldana, M.1
Balleza, E.2
Kauffman, S.A.3
Resendiz, O.4
-
7
-
-
2942606066
-
Structure and evolution of transcriptional regulatory networks
-
Babu M.M., Luscombe N.M., Aravind L., Gerstein M., Teichmann S.A. Structure and evolution of transcriptional regulatory networks. Curr. Opin. Struct. Biol. 2004, 14:283-291.
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 283-291
-
-
Babu, M.M.1
Luscombe, N.M.2
Aravind, L.3
Gerstein, M.4
Teichmann, S.A.5
-
8
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabási A.L., Albert R. Emergence of scaling in random networks. Science 1999, 286:509-512.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabási, A.L.1
Albert, R.2
-
9
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
Barabási A.L., Oltvai Z.N. Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 2004, 5:101-113.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 101-113
-
-
Barabási, A.L.1
Oltvai, Z.N.2
-
10
-
-
34447537179
-
Evolution favors protein mutational robustness in sufficiently large populations
-
Bloom J.D., Lu Z., Chem D., Raval A., Venturelli O.S., Arnold F.H. Evolution favors protein mutational robustness in sufficiently large populations. BMC Biol. 2007, 5:29.
-
(2007)
BMC Biol.
, vol.5
, pp. 29
-
-
Bloom, J.D.1
Lu, Z.2
Chem, D.3
Raval, A.4
Venturelli, O.S.5
Arnold, F.H.6
-
11
-
-
34447559360
-
Neutral genetic drift can alter promiscuous protein functions, potentially aiding functional evolution
-
Bloom J.D., Romero P.A., Lu Z., Arnold F.H. Neutral genetic drift can alter promiscuous protein functions, potentially aiding functional evolution. Biol. Direct 2007, 2:17.
-
(2007)
Biol. Direct
, vol.2
, pp. 17
-
-
Bloom, J.D.1
Romero, P.A.2
Lu, Z.3
Arnold, F.H.4
-
12
-
-
67349140927
-
Reliability of regulatory networks and its evolution
-
Braunewell S., Bornholdt S. Reliability of regulatory networks and its evolution. J. Theor. Biol. 2009, 258:502-512.
-
(2009)
J. Theor. Biol.
, vol.258
, pp. 502-512
-
-
Braunewell, S.1
Bornholdt, S.2
-
13
-
-
22744439568
-
Evolution at two levels: on genes and form
-
Carroll S.B. Evolution at two levels: on genes and form. PLoS Biol. 2005, 3:e245.
-
(2005)
PLoS Biol.
, vol.3
-
-
Carroll, S.B.1
-
14
-
-
35348892535
-
Innovation and robustness in complex regulatory gene networks
-
Ciliberti S., Martin O.C., Wagner A. Innovation and robustness in complex regulatory gene networks. Proc. Natl. Acad. Sci. USA 2007, 104:13591-13596.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 13591-13596
-
-
Ciliberti, S.1
Martin, O.C.2
Wagner, A.3
-
15
-
-
33847268619
-
Robustness can evolve gradually in complex regulatory gene networks with varying topology
-
Ciliberti S., Martin O.C., Wagner A. Robustness can evolve gradually in complex regulatory gene networks with varying topology. PLoS Comput. Biol. 2007, 3:e15.
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Ciliberti, S.1
Martin, O.C.2
Wagner, A.3
-
16
-
-
48249134043
-
Evolution of evolvability in gene regulatory networks
-
Crombach A., Hogeweg P. Evolution of evolvability in gene regulatory networks. PLoS Comput. Biol. 2008, 4:e1000112.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Crombach, A.1
Hogeweg, P.2
-
17
-
-
49549094042
-
Sloppiness, robustness, and evolvability in systems biology
-
Daniels B.C., Chen Y.-J., Sethna J.P., Gutenkunst R.N., Myers C.R. Sloppiness, robustness, and evolvability in systems biology. Curr. Opin. Biotechnol. 2008, 19:389-395.
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 389-395
-
-
Daniels, B.C.1
Chen, Y.-J.2
Sethna, J.P.3
Gutenkunst, R.N.4
Myers, C.R.5
-
18
-
-
0000656226
-
The evolution of evolvability
-
Dawkins R. The evolution of evolvability. Artif. Life 1989, 6:201-220.
-
(1989)
Artif. Life
, vol.6
, pp. 201-220
-
-
Dawkins, R.1
-
19
-
-
84956252965
-
Random networks of automata: a simple annealed approximation
-
Derrida B., Pomeau Y. Random networks of automata: a simple annealed approximation. Europhys. Lett. 1986, 1:45-49.
-
(1986)
Europhys. Lett.
, vol.1
, pp. 45-49
-
-
Derrida, B.1
Pomeau, Y.2
-
20
-
-
75149186552
-
Mutational robustness can facilitate adaptation
-
Draghi J.A., Parsons T.L., Wagner G.P., Plotkin J.B. Mutational robustness can facilitate adaptation. Nature 2010, 463:353-355.
-
(2010)
Nature
, vol.463
, pp. 353-355
-
-
Draghi, J.A.1
Parsons, T.L.2
Wagner, G.P.3
Plotkin, J.B.4
-
21
-
-
68949189705
-
Critical Boolean networks with scale-free in-degree distribution
-
Drossel B., Greil F. Critical Boolean networks with scale-free in-degree distribution. Phys. Rev. E 2009, 80:26102.
-
(2009)
Phys. Rev. E
, vol.80
, pp. 26102
-
-
Drossel, B.1
Greil, F.2
-
24
-
-
16644389406
-
A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles
-
Espinosa-Soto C., Padilla-Longoria P., Alvarez-Buylla E.R. A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles. Plant Cell 2004, 16:2923-2939.
-
(2004)
Plant Cell
, vol.16
, pp. 2923-2939
-
-
Espinosa-Soto, C.1
Padilla-Longoria, P.2
Alvarez-Buylla, E.R.3
-
25
-
-
0037174669
-
Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop
-
Hirata H., Yoshiura S., Ohtsuka T., Bessho Y., Harada T., Yoshikawa K., Kageyama R. Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop. Science 2002, 298:840-843.
-
(2002)
Science
, vol.298
, pp. 840-843
-
-
Hirata, H.1
Yoshiura, S.2
Ohtsuka, T.3
Bessho, Y.4
Harada, T.5
Yoshikawa, K.6
Kageyama, R.7
-
26
-
-
0020118274
-
Neural networks and physical systems with emergent collective computational abilities
-
Hopfield J.J. Neural networks and physical systems with emergent collective computational abilities. Proc. Natl. Acad. Sci. USA 1982, 79:2554-2558.
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 2554-2558
-
-
Hopfield, J.J.1
-
27
-
-
18144408736
-
Cell fates as high-dimensional attractor states of a complex gene regulatory network
-
Huang S., Eichler G., Bar-Yam Y., Ingber D.E. Cell fates as high-dimensional attractor states of a complex gene regulatory network. Phys. Rev. Lett. 2005, 94:128701.
-
(2005)
Phys. Rev. Lett.
, vol.94
, pp. 128701
-
-
Huang, S.1
Eichler, G.2
Bar-Yam, Y.3
Ingber, D.E.4
-
28
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong H., Tombor B., Albert R., Oltvai Z.N., Barabasi A.-L. The large-scale organization of metabolic networks. Nature 2000, 407:651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.-L.5
-
29
-
-
0014489272
-
Metabolic stability and epigenesis in randomly constructed genetic nets
-
Kauffman S.A. Metabolic stability and epigenesis in randomly constructed genetic nets. J. Theor. Biol. 1969, 22:437-467.
-
(1969)
J. Theor. Biol.
, vol.22
, pp. 437-467
-
-
Kauffman, S.A.1
-
31
-
-
27744432926
-
Revisiting "scale-free" networks
-
Keller E.K. Revisiting "scale-free" networks. BioEssays 2005, 27:1060-1068.
-
(2005)
BioEssays
, vol.27
, pp. 1060-1068
-
-
Keller, E.K.1
-
34
-
-
29444440886
-
Topology of biological networks and reliability of information processing
-
Klemm K., Bornholdt S. Topology of biological networks and reliability of information processing. Proc. Natl. Acad. Sci. USA 2005, 102:18414-18419.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 18414-18419
-
-
Klemm, K.1
Bornholdt, S.2
-
35
-
-
0000491825
-
Correspondence between neural threshold networks and Kauffman Boolean cellular automata
-
Kurten K. Correspondence between neural threshold networks and Kauffman Boolean cellular automata. J. Phys. A Math. Gen. 1988, 21:L615-L619.
-
(1988)
J. Phys. A Math. Gen.
, vol.21
-
-
Kurten, K.1
-
36
-
-
1842687878
-
The yeast cell-cycle network is robustly designed
-
Li F., Long T., Lu Y., Ouyang Q., Tang C. The yeast cell-cycle network is robustly designed. Proc. Natl. Acad. Sci. USA 2004, 101:4781-4786.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 4781-4786
-
-
Li, F.1
Long, T.2
Lu, Y.3
Ouyang, Q.4
Tang, C.5
-
37
-
-
67349192947
-
Evolution of a population of random Boolean networks
-
Mihaljev T., Drossel B. Evolution of a population of random Boolean networks. Eur. Phys. J. B 2009, 67:259.
-
(2009)
Eur. Phys. J. B
, vol.67
, pp. 259
-
-
Mihaljev, T.1
Drossel, B.2
-
38
-
-
77957016245
-
-
On the uniform generation of random graphs with prescribed degree sequences, unpublished manuscript, available at.
-
Milo, R., Kashtan, N., Itzkovitz, S., Newman, M.E.J., Alon, U., 2004. On the uniform generation of random graphs with prescribed degree sequences, unpublished manuscript, available at. http://www.arxiv.org.
-
(2004)
-
-
Milo, R.1
Kashtan, N.2
Itzkovitz, S.3
Newman, M.E.J.4
Alon, U.5
-
39
-
-
0035420732
-
Random graphs with arbitrary degree distributions and their applications
-
Newman M.E.J., Strogatz S.H., Watts D.J. Random graphs with arbitrary degree distributions and their applications. Phys. Rev. E 2001, 64:26118.
-
(2001)
Phys. Rev. E
, vol.64
, pp. 26118
-
-
Newman, M.E.J.1
Strogatz, S.H.2
Watts, D.J.3
-
40
-
-
33746778773
-
Effects of topology on network evolution
-
Oikonomou P., Cluzel P. Effects of topology on network evolution. Nat. Phys. 2006, 2:532-536.
-
(2006)
Nat. Phys.
, vol.2
, pp. 532-536
-
-
Oikonomou, P.1
Cluzel, P.2
-
41
-
-
70350569876
-
Comparing different ODE modelling approaches for gene regulatory networks
-
Polynikis A., Hogan S.J., di Bernardo M. Comparing different ODE modelling approaches for gene regulatory networks. J. Theor. Biol. 2009, 261:511-530.
-
(2009)
J. Theor. Biol.
, vol.261
, pp. 511-530
-
-
Polynikis, A.1
Hogan, S.J.2
di Bernardo, M.3
-
43
-
-
0038115065
-
The segmentation clock: converting embryonic time into spatial pattern
-
Pourquie O. The segmentation clock: converting embryonic time into spatial pattern. Science 2003, 301:328-330.
-
(2003)
Science
, vol.301
, pp. 328-330
-
-
Pourquie, O.1
-
44
-
-
76749154920
-
Evolution of Boolean networks under selection for a robust response to external inputs yields an extensive neutral space
-
Szejka A., Drossel B. Evolution of Boolean networks under selection for a robust response to external inputs yields an extensive neutral space. Phys. Rev. E 2010, 81:21908.
-
(2010)
Phys. Rev. E
, vol.81
, pp. 21908
-
-
Szejka, A.1
Drossel, B.2
-
46
-
-
0028206995
-
Evolution of gene networks by gene duplications: a mathematical model and its implications on genome organization
-
Wagner A. Evolution of gene networks by gene duplications: a mathematical model and its implications on genome organization. Proc. Natl. Acad. Sci. USA 1994, 91:4387-4391.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 4387-4391
-
-
Wagner, A.1
-
48
-
-
56549087988
-
Neutralism and selectionism: a network-based reconciliation
-
Wagner A. Neutralism and selectionism: a network-based reconciliation. Nat. Rev. Genet. 2008, 9:965-974.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 965-974
-
-
Wagner, A.1
-
49
-
-
36348992094
-
Robustness and evolvability: a paradox resolved
-
Wagner A. Robustness and evolvability: a paradox resolved. Proc. R. Soc. B 2008, 275:91-100.
-
(2008)
Proc. R. Soc. B
, vol.275
, pp. 91-100
-
-
Wagner, A.1
|