-
1
-
-
0001294195
-
-
ACHRE4 0001-4842. 10.1021/ar970113w
-
D. R. Yarkony, Acc. Chem. Res. ACHRE4 0001-4842 31, 511 (1998). 10.1021/ar970113w
-
(1998)
Acc. Chem. Res.
, vol.31
, pp. 511
-
-
Yarkony, D.R.1
-
3
-
-
0036202338
-
-
PPCPFQ 1463-9076. 10.1039/b110941n
-
A. L. Sobolewski, W. Domcke, C. Dedonder-Lardeux, and C. Jouvet, Phys. Chem. Chem. Phys. PPCPFQ 1463-9076 4, 1093 (2002). 10.1039/b110941n
-
(2002)
Phys. Chem. Chem. Phys.
, vol.4
, pp. 1093
-
-
Sobolewski, A.L.1
Domcke, W.2
Dedonder-Lardeux, C.3
Jouvet, C.4
-
6
-
-
0034662988
-
-
PNASA6 0027-8424. 10.1073/pnas.97.17.9379
-
R. Gonzalez-Luque, M. Garavelli, F. Bernardi, M. Merchán, M. A. Robb, and M. Olivucci, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 97, 9379 (2000). 10.1073/pnas.97.17.9379
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 9379
-
-
Gonzalez-Luque, R.1
Garavelli, M.2
Bernardi, F.3
Merchán, M.4
Robb, M.A.5
Olivucci, M.6
-
7
-
-
0037133274
-
The role of intersection topography in bond selectivity of cis-trans photoisomerization
-
DOI 10.1073/pnas.032658099
-
M. Ben-Nun, F. Molnar, K. Schulten, and T. J. Marítinez, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 99, 1769 (2002). 10.1073/pnas.032658099 (Pubitemid 34168965)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.4
, pp. 1769-1773
-
-
Ben-Nun, M.1
Molnar, F.2
Schulten, K.3
Martinez, T.J.4
-
8
-
-
0037046714
-
Optimization of conical intersections with floating occupation semiempirical configuration interaction wave functions
-
DOI 10.1021/jp014289y
-
A. Toniolo, M. Ben-nun, and T. J. Martínez, J. Phys. Chem. A JPCAFH 1089-5639 106, 4679 (2002). 10.1021/jp014289y (Pubitemid 35290058)
-
(2002)
Journal of Physical Chemistry A
, vol.106
, Issue.18
, pp. 4679-4689
-
-
Toniolo, A.1
Ben-Nun, M.2
Martinez, T.J.3
-
9
-
-
33846152961
-
Conical intersections in thymine
-
DOI 10.1021/jp0633897
-
S. Perun, A. L. Sobolewski, and W. Domcke, J. Phys. Chem. A JPCAFH 1089-5639 110, 13238 (2006). 10.1021/jp0633897 (Pubitemid 46074924)
-
(2006)
Journal of Physical Chemistry A
, vol.110
, Issue.49
, pp. 13238-13244
-
-
Perun, S.1
Sobolewski, A.L.2
Domcke, W.3
-
10
-
-
24944489190
-
Three-state conical intersections in nucleic acid bases
-
DOI 10.1021/jp0513622
-
S. Matsika, J. Phys. Chem. A JPCAFH 1089-5639 109, 7538 (2005). 10.1021/jp0513622 (Pubitemid 41321594)
-
(2005)
Journal of Physical Chemistry A
, vol.109
, Issue.33
, pp. 7538-7545
-
-
Matsika, S.1
-
11
-
-
5644244488
-
Conical intersection dynamics in solution: The chromophore of Green Fluorescent Protein
-
DOI 10.1039/b401167h
-
A. Toniolo, S. Olsen, L. Manohar, and T. J. Martínez, Faraday Discuss. FDISE6 0301-7249 127, 149 (2004). 10.1039/b401167h (Pubitemid 39369443)
-
(2004)
Faraday Discussions
, vol.127
, pp. 149-163
-
-
Toniolo, A.1
Olsen, S.2
Manohar, L.3
Martinez, T.J.4
-
12
-
-
1842502916
-
Photoactivation of the Photoactive Yellow Protein: Why Photon Absorption Triggers a Trans-to-Cis Isomerization of the Chromophore in the Protein
-
DOI 10.1021/ja039557f
-
G. Groenhof, M. Bouxin-Cademartory, B. Hess, S. P. de Visser, H. J. C. Berendesen, M. Olivucci, A. E. Mark, and M. A. Robb, J. Am. Chem. Soc. JACSAT 0002-7863 126, 4228 (2004). 10.1021/ja039557f (Pubitemid 38453881)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.13
, pp. 4228-4233
-
-
Groenhof, G.1
Bouxin-Cademartory, M.2
Hess, B.3
De Visser, S.P.4
Berendsen, H.J.C.5
Olivucci, M.6
Mark, A.E.7
Robb, M.A.8
-
13
-
-
65249085122
-
-
JPCBFK 1089-5647. 10.1021/jp8073464
-
A. M. Virshup, C. Punwong, T. V. Pogorelov, B. A. Lindquist, C. Ko, and T. J. Martinez, J. Phys. Chem. B JPCBFK 1089-5647 113, 3280 (2009). 10.1021/jp8073464
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 3280
-
-
Virshup, A.M.1
Punwong, C.2
Pogorelov, T.V.3
Lindquist, B.A.4
Ko, C.5
Martinez, T.J.6
-
14
-
-
0041320967
-
-
BIOJAU 0006-3495. 10.1016/S0006-3495(03)74576-7
-
S. Hayashi, E. Tajkhorshid, and K. Schulten, Biophys. J. BIOJAU 0006-3495 85, 1440 (2003). 10.1016/S0006-3495(03)74576-7
-
(2003)
Biophys. J.
, vol.85
, pp. 1440
-
-
Hayashi, S.1
Tajkhorshid, E.2
Schulten, K.3
-
15
-
-
0035498349
-
Photoisomerization in rhodopsin
-
DOI 10.1023/A:1013123016803
-
H. Kandori, Y. Shichida, and T. Yoshizawa, Biochemistry (Mosc.) BIORAK 0006-2979 66, 1197 (2001). 10.1023/A:1013123016803 (Pubitemid 34048178)
-
(2001)
Biochemistry (Moscow)
, vol.66
, Issue.11
, pp. 1197-1209
-
-
Kandori, H.1
Shichida, Y.2
Yoshizawa, T.3
-
16
-
-
5644259862
-
Environmental effects on a conical intersection: A model study
-
DOI 10.1039/b315071b
-
I. Burghardt, L. S. Cederbaum, and J. T. Hynes, Faraday Discuss. FDISE6 0301-7249 127, 395 (2004). 10.1039/b315071b (Pubitemid 39369457)
-
(2004)
Faraday Discussions
, vol.127
, pp. 395-411
-
-
Burghardt, I.1
Cederbaum, L.S.2
Hynes, J.T.3
-
17
-
-
33646133276
-
Ultrafast excited-state dynamics at a conical intersection: The role of environmental effects
-
DOI 10.1088/0031-8949/73/1/N08, PII S00318949061104808, N08
-
I. Burghardt, J. T. Hynes, E. Gindensperger, and L. S. Cederbaum, Phys. Scr. PHSTBO 0031-8949 73, C42 (2006). 10.1088/0031-8949/73/1/N08 (Pubitemid 43959059)
-
(2006)
Physica Scripta
, vol.73
, Issue.1
-
-
Burghardt, I.1
Hynes, J.T.2
Gindensperger, E.3
Cederbaum, L.S.4
-
18
-
-
33645757034
-
-
MOPHAM 0026-8976. 10.1080/00268970500417895
-
R. Spezia, I. Burghardt, and J. T. Hynes, Mol. Phys. MOPHAM 0026-8976 104, 903 (2006). 10.1080/00268970500417895
-
(2006)
Mol. Phys.
, vol.104
, pp. 903
-
-
Spezia, R.1
Burghardt, I.2
Hynes, J.T.3
-
19
-
-
25444447969
-
+
-
DOI 10.1063/1.2038867, 114510
-
S. Yamazaki and S. Kato, J. Chem. Phys. JCPSA6 0021-9606 123, 114510 (2005). 10.1063/1.2038867 (Pubitemid 41377080)
-
(2005)
Journal of Chemical Physics
, vol.123
, Issue.11
, pp. 1-13
-
-
Yamazaki, S.1
Kato, S.2
-
20
-
-
36449005091
-
-
JCPSA6 0021-9606. 10.1063/1.466888
-
S. Ten-no, F. Hirata, and S. Kato, J. Chem. Phys. JCPSA6 0021-9606 100, 7443 (1994). 10.1063/1.466888
-
(1994)
J. Chem. Phys.
, vol.100
, pp. 7443
-
-
Ten-No, S.1
Hirata, F.2
Kato, S.3
-
21
-
-
0001191877
-
-
JCPSA6 0021-9606. 10.1063/1.472015
-
H. Sato, F. Hirata, and S. Kato, J. Chem. Phys. JCPSA6 0021-9606 105, 1546 (1996). 10.1063/1.472015
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 1546
-
-
Sato, H.1
Hirata, F.2
Kato, S.3
-
23
-
-
0033556809
-
-
JCPSA6 0021-9606. 10.1063/1.478216
-
K. Naka, A. Morita, and S. Kato, J. Chem. Phys. JCPSA6 0021-9606 110, 3484 (1999). 10.1063/1.478216
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 3484
-
-
Naka, K.1
Morita, A.2
Kato, S.3
-
24
-
-
38749087611
-
Optimizing conical intersections without derivative coupling vectors: Application to multistate multireference second-order perturbation theory (MS-CASPT2)
-
DOI 10.1021/jp0761618
-
B. G. Levine, J. D. Coe, and T. J. Martínez, J. Phys. Chem. B JPCBFK 1089-5647 112, 405 (2008). 10.1021/jp0761618 (Pubitemid 351184614)
-
(2008)
Journal of Physical Chemistry B
, vol.112
, Issue.2
, pp. 405-413
-
-
Levine, B.G.1
Coe, J.D.2
Martinez, T.J.3
-
25
-
-
0032557323
-
-
CHPLBC 0009-2614. 10.1016/S0009-2614(98)00252-8
-
J. Finley, P. -Å. Malmqvist, B. O. Roos, and L. Serrano-Andŕs, Chem. Phys. Lett. CHPLBC 0009-2614 288, 299 (1998). 10.1016/S0009-2614(98)00252-8
-
(1998)
Chem. Phys. Lett.
, vol.288
, pp. 299
-
-
Finley, J.1
Malmqvist, P.-Å.2
Roos, B.O.3
Serrano-Andŕs, L.4
-
26
-
-
67649386463
-
-
CHPLBC 0009-2614. 10.1016/j.cplett.2009.05.067
-
T. Mori and S. Kato, Chem. Phys. Lett. CHPLBC 0009-2614 476, 97 (2009). 10.1016/j.cplett.2009.05.067
-
(2009)
Chem. Phys. Lett.
, vol.476
, pp. 97
-
-
Mori, T.1
Kato, S.2
-
27
-
-
34247275288
-
Geometry optimization based on linear response free energy with quantum mechanical/molecular mechanical method: Applications to Menshutkin-type and Claisen rearrangement reactions in aqueous solution
-
DOI 10.1063/1.2715941
-
M. Higashi, S. Hayashi, and S. Kato, J. Chem. Phys. JCPSA6 0021-9606 126, 144503 (2007). 10.1063/1.2715941 (Pubitemid 46610004)
-
(2007)
Journal of Chemical Physics
, vol.126
, Issue.14
, pp. 144503
-
-
Higashi, M.1
Hayashi, S.2
Kato, S.3
-
28
-
-
34250736228
-
Ab initio calculation of proton-coupled electron transfer rates using the external-potential representation: A ubiquinol complex in solution
-
DOI 10.1063/1.2737048
-
T. Yamamoto and S. Kato, J. Chem. Phys. JCPSA6 0021-9606 126, 224514 (2007). 10.1063/1.2737048 (Pubitemid 46964790)
-
(2007)
Journal of Chemical Physics
, vol.126
, Issue.22
, pp. 224514
-
-
Yamamoto, T.1
Kato, S.2
-
29
-
-
33847271076
-
Analytical RISM-MP2 free energy gradient method: Application to the Schlenk equilibrium of Grignard reagent
-
DOI 10.1016/j.cplett.2007.02.018, PII S0009261407001856
-
T. Mori and S. Kato, Chem. Phys. Lett. CHPLBC 0009-2614 437, 159 (2007). 10.1016/j.cplett.2007.02.018 (Pubitemid 46331066)
-
(2007)
Chemical Physics Letters
, vol.437
, Issue.1-3
, pp. 159-163
-
-
Mori, T.1
Kato, S.2
-
30
-
-
0030794947
-
+ protonated Shiff base: An ab initio minimal model for retinal photoisomerization
-
DOI 10.1021/ja9610895
-
M. Garavelli, P. Celani, F. Bernardi, M. A. Robb, and M. Olivucci, J. Am. Chem. Soc. JACSAT 0002-7863 119, 6891 (1997). 10.1021/ja9610895 (Pubitemid 27343515)
-
(1997)
Journal of the American Chemical Society
, vol.119
, Issue.29
, pp. 6891-6901
-
-
Garavelli, M.1
Celani, P.2
Bernardi, F.3
Robb, M.A.4
Olivucci, M.5
-
31
-
-
10444237332
-
Counterion controlled photoisomerization of retinal chromophore models: A computational investigation
-
DOI 10.1021/ja048782+
-
A. Cembran, F. Bernardi, M. Olivucci, and M. Garavelli, J. Am. Chem. Soc. JACSAT 0002-7863 126, 16018 (2004). 10.1021/ja048782+ (Pubitemid 39642222)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.49
, pp. 16018-16037
-
-
Cembran, A.1
Bernardi, F.2
Olivucci, M.3
Garavelli, M.4
-
32
-
-
0029864611
-
Real-time detection of 60-fs isomerization in a rhodopsin analog containing eight-membered-ring retinal
-
DOI 10.1021/ja951665h
-
H. Kandori, H. Sasabe, K. Nakanishi, T. Yoshizawa, T. Mizukami, and Y. Schichida, J. Am. Chem. Soc. JACSAT 0002-7863 118, 1002 (1996). 10.1021/ja951665h (Pubitemid 26074343)
-
(1996)
Journal of the American Chemical Society
, vol.118
, Issue.5
, pp. 1002-1005
-
-
Kandori, H.1
Sasabe, H.2
Nakanishi, K.3
Yoshizawa, T.4
Mizukami, T.5
Shichida, Y.6
-
33
-
-
0024279842
-
-
SCIEAS 0036-8075. 10.1126/science.3363359
-
R. A. Mathies, C. H. B. Cruz, W. T. Pollard, and C. V. Shank, Science SCIEAS 0036-8075 240, 777 (1988). 10.1126/science.3363359
-
(1988)
Science
, vol.240
, pp. 777
-
-
Mathies, R.A.1
Cruz, C.H.B.2
Pollard, W.T.3
Shank, C.V.4
-
34
-
-
0000142880
-
-
JACSAT 0002-7863. 10.1021/ja00114a040
-
H. Kandori, Y. Katsuta, M. Ito, and H. Sasabe, J. Am. Chem. Soc. JACSAT 0002-7863 117, 2669 (1995). 10.1021/ja00114a040
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 2669
-
-
Kandori, H.1
Katsuta, Y.2
Ito, M.3
Sasabe, H.4
-
35
-
-
0026214242
-
-
PHCBAP 0031-8655. 10.1111/j.1751-1097.1991.tb02038.x
-
Y. Koyama, K. Kubo, M. Komori, H. Yasuda, and Y. Mukai, Photochem. Photobiol. PHCBAP 0031-8655 54, 433 (1991). 10.1111/j.1751-1097.1991.tb02038.x
-
(1991)
Photochem. Photobiol.
, vol.54
, pp. 433
-
-
Koyama, Y.1
Kubo, K.2
Komori, M.3
Yasuda, H.4
Mukai, Y.5
-
37
-
-
0037123226
-
Reaction path analysis of the tunable photoisomerization selectivity of free and locked retinal chromophores
-
DOI 10.1021/ja017502c
-
L. De Vico, C. S. Page, M. Garavelli, F. Bernardi, R. Bassoni, and M. Olivucci, J. Am. Chem. Soc. JACSAT 0002-7863 124, 4124 (2002). 10.1021/ja017502c (Pubitemid 34326443)
-
(2002)
Journal of the American Chemical Society
, vol.124
, Issue.15
, pp. 4124-4134
-
-
De Vico, L.1
Page, C.S.2
Garavelli, M.3
Bernardi, F.4
Basosi, R.5
Olivucci, M.6
-
38
-
-
0034647672
-
-
THEODJ 0166-1280. 10.1016/S0166-1280(00)00410-3
-
F. Molnar, M. Ben-nun, T. J. Martinez, and K. Schulten, J. Mol. Struct.: THEOCHEM THEODJ 0166-1280 506, 169 (2000). 10.1016/S0166-1280(00)00410-3
-
(2000)
J. Mol. Struct.: THEOCHEM
, vol.506
, pp. 169
-
-
Molnar, F.1
Ben-Nun, M.2
Martinez, T.J.3
Schulten, K.4
-
40
-
-
0034315814
-
Electrostatic protein-chromophore interactions promote the all-trans→13-cis isomerization of the protonated retinal Schiff base in bacteriorhodopsin: An ab initio CASSCF/MRCI study
-
DOI 10.1021/jp0019254
-
M. Nonella, J. Phys. Chem. B JPCBFK 1089-5647 104, 11379 (2000). 10.1021/jp0019254 (Pubitemid 32033016)
-
(2000)
Journal of Physical Chemistry B
, vol.104
, Issue.47
, pp. 11379-11388
-
-
Nonella, M.1
-
41
-
-
34848898125
-
Stairway to the conical intersection: A computational study of the retinal isomerization
-
DOI 10.1021/jp073908l
-
R. Send and D. Sundholm, J. Phys. Chem. A JPCAFH 1089-5639 111, 8766 (2007). 10.1021/jp073908l (Pubitemid 47497590)
-
(2007)
Journal of Physical Chemistry A
, vol.111
, Issue.36
, pp. 8766-8773
-
-
Send, R.1
Sundholm, D.2
-
42
-
-
0000636141
-
-
IJQCB2 0020-7608. 10.1002/(SICI)1097-461X(1998)66:2<157::AID-QUA73.0. CO;2-U
-
K. Nakayama, H. Nakano, and K. Hirao, Int. J. Quantum Chem. IJQCB2 0020-7608 66, 157 (1998). 10.1002/(SICI)1097-461X(1998)66:2<157::AID-QUA73.0. CO;2-U
-
(1998)
Int. J. Quantum Chem.
, vol.66
, pp. 157
-
-
Nakayama, K.1
Nakano, H.2
Hirao, K.3
-
43
-
-
0141428898
-
-
JCPSA6 0021-9606. 10.1063/1.1597672
-
P. Celani and H. -J. Werner, J. Chem. Phys. JCPSA6 0021-9606 119, 5044 (2003). 10.1063/1.1597672
-
(2003)
J. Chem. Phys.
, vol.119
, pp. 5044
-
-
Celani, P.1
Werner, H.-J.2
-
45
-
-
77955752107
-
-
See supplementary material at E-JCPSA6-133-052029 for state-averaged natural orbital graphics of the four geometries [FC, SP, (CCT) CI, and (CNT) CI]
-
See supplementary material at http://dx.doi.org/10.1063/1.3472033 E-JCPSA6-133-052029 for state-averaged natural orbital graphics of the four geometries [FC, SP, (CCT) CI, and (CNT) CI].
-
-
-
-
46
-
-
3042524904
-
-
JPCHAX 0022-3654. 10.1021/j100142a004
-
C. I. Bayly, P. Cieplak, W. D. Cornell, and P. A. Kollman, J. Phys. Chem. JPCHAX 0022-3654 97, 10269 (1993). 10.1021/j100142a004
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 10269
-
-
Bayly, C.I.1
Cieplak, P.2
Cornell, W.D.3
Kollman, P.A.4
-
47
-
-
0029011701
-
-
JACSAT 0002-7863. 10.1021/ja00124a002
-
W. D. Cornell, P. Cieplak, C. I. Bayly, I. R. Gould, K. M. Merz, Jr., D. M. Ferguson, D. C. Spellmeyer, T. Fox, J. W. Caldwell, and P. A. Kollman, J. Am. Chem. Soc. JACSAT 0002-7863 117, 5179 (1995). 10.1021/ja00124a002
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr., K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
48
-
-
38749135848
-
Theoretical study of temperature and solvent dependence of the free-energy surface of the intramolecular electron-transfer based on the RISM-SCF theory: Application to the 1,3-dinitrobenzene radical anion in acetonitrile and methanol
-
DOI 10.1021/jp076219i
-
N. Yoshida, T. Ishida, and F. Hirata, J. Phys. Chem. B JPCBFK 1089-5647 112, 433 (2008). 10.1021/jp076219i (Pubitemid 351184617)
-
(2008)
Journal of Physical Chemistry B
, vol.112
, Issue.2
, pp. 433-440
-
-
Yoshida, N.1
Ishida, T.2
Hirata, F.3
-
49
-
-
31744445367
-
-
MOLPRO, version 2008.1
-
MOLPRO, a package of ab initio programs designed H. -J. Werner and P. J. Knowles, version 2008.1, R. D. Amos, A. Bernhardsson, A. Berning
-
A Package of Ab Initio Programs Designed
-
-
Werner, H.-J.1
Knowles, P.J.2
Amos, R.D.3
Bernhardsson, A.4
Berning, A.5
-
51
-
-
33947211174
-
Solvent effect on conical intersections in excited-state 9H-adenine: Radiationless decay mechanism in polar solvent
-
DOI 10.1021/ja0669169
-
S. Yamazaki and S. Kato, J. Am. Chem. Soc. JACSAT 0002-7863 129, 2901 (2007). 10.1021/ja0669169 (Pubitemid 46417966)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.10
, pp. 2901-2909
-
-
Yamazaki, S.1
Kato, S.2
-
52
-
-
0001359499
-
-
JCPSA6 0021-9606. 10.1063/1.480779
-
D. R. Yarkony, J. Chem. Phys. JCPSA6 0021-9606 112, 2111 (2000). 10.1063/1.480779
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 2111
-
-
Yarkony, D.R.1
-
53
-
-
44449126227
-
-
JCTCCE 1549-9618. 10.1021/ct7002435
-
F. Sicilia, L. Blancafort, M. J. Bearpark, and M. A. Robb, J. Chem. Theory Comput. JCTCCE 1549-9618 4, 257 (2008). 10.1021/ct7002435
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 257
-
-
Sicilia, F.1
Blancafort, L.2
Bearpark, M.J.3
Robb, M.A.4
|