메뉴 건너뛰기




Volumn 126, Issue 22, 2007, Pages

Ab initio calculation of proton-coupled electron transfer rates using the external-potential representation: A ubiquinol complex in solution

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL REACTIONS; COMPUTATION THEORY; ELECTROSTATICS; MATHEMATICAL MODELS; PROTONS; SCHRODINGER EQUATION;

EID: 34250736228     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.2737048     Document Type: Article
Times cited : (17)

References (61)
  • 2
    • 0032233055 scopus 로고    scopus 로고
    • 0066-426X 10.1146/annurev.physchem.49.1.531
    • R. M. Levy and E. Gallicchio, Annu. Rev. Phys. Chem. 0066-426X 10.1146/annurev.physchem.49.1.531 49, 531 (1998).
    • (1998) Annu. Rev. Phys. Chem. , vol.49 , pp. 531
    • Levy, R.M.1    Gallicchio, E.2
  • 3
    • 84961983510 scopus 로고
    • 0301-0104 10.1016/0301-0104(91)89026-7
    • M. V. Basilevsky and G. E. Chudinov, Chem. Phys. 0301-0104 10.1016/0301-0104(91)89026-7 157, 327 (1991).
    • (1991) Chem. Phys. , vol.157 , pp. 327
    • Basilevsky, M.V.1    Chudinov, G.E.2
  • 6
    • 3142736515 scopus 로고    scopus 로고
    • 0021-9606 10.1063/1.1757436
    • Z. Lu and W. Yang, J. Chem. Phys. 0021-9606 10.1063/1.1757436 121, 89 (2004).
    • (2004) J. Chem. Phys. , vol.121 , pp. 89
    • Lu, Z.1    Yang, W.2
  • 7
    • 3142748331 scopus 로고    scopus 로고
    • 0021-9606 10.1063/1.1757437
    • See also M. Wang, Z. Lu, and W. Yang, J. Chem. Phys. 0021-9606 10.1063/1.1757437 121, 101 (2004); M. Wang, Z. Lu, and W. Yang, J. Chem. Phys. 124, 124516 (2006).
    • (2004) J. Chem. Phys. , vol.121 , pp. 101
    • Wang, M.1    Lu, Z.2    Yang, W.3
  • 8
    • 34547853504 scopus 로고    scopus 로고
    • See also M. Wang, Z. Lu, and W. Yang, J. Chem. Phys. 0021-9606 10.1063/1.1757437 121, 101 (2004); M. Wang, Z. Lu, and W. Yang, J. Chem. Phys. 124, 124516 (2006).
    • (2006) J. Chem. Phys. , vol.124 , pp. 124516
    • Wang, M.1    Lu, Z.2    Yang, W.3
  • 9
    • 25444447969 scopus 로고    scopus 로고
    • 0021-9606 10.1063/1.2038867
    • S. Yamazaki and S. Kato, J. Chem. Phys. 0021-9606 10.1063/1.2038867 123, 114510 (2005).
    • (2005) J. Chem. Phys. , vol.123 , pp. 114510
    • Yamazaki, S.1    Kato, S.2
  • 10
    • 36749117583 scopus 로고
    • 0021-9606 10.1063/1.434895
    • B. U. Felderhof, J. Chem. Phys. 0021-9606 10.1063/1.434895 67, 493 (1977).
    • (1977) J. Chem. Phys. , vol.67 , pp. 493
    • Felderhof, B.U.1
  • 11
    • 0000119135 scopus 로고
    • 0022-3654 10.1021/j100080a012
    • R. A. Marcus, J. Phys. Chem. 0022-3654 10.1021/j100080a012 98, 7170 (1994).
    • (1994) J. Phys. Chem. , vol.98 , pp. 7170
    • Marcus, R.A.1
  • 12
    • 0037991000 scopus 로고
    • 0022-3654 10.1021/j100241a008
    • D. F. Calef and P. G. Wolynes, J. Phys. Chem. 0022-3654 10.1021/j100241a008 87, 3387 (1983); D. F. Calef and P. G. Wolynes, J. Chem. Phys. 0021-9606 10.1063/1.444472 78, 470 (1983).
    • (1983) J. Phys. Chem. , vol.87 , pp. 3387
    • Calef, D.F.1    Wolynes, P.G.2
  • 13
    • 0001008751 scopus 로고
    • 0021-9606 10.1063/1.444472
    • D. F. Calef and P. G. Wolynes, J. Phys. Chem. 0022-3654 10.1021/j100241a008 87, 3387 (1983); D. F. Calef and P. G. Wolynes, J. Chem. Phys. 0021-9606 10.1063/1.444472 78, 470 (1983).
    • (1983) J. Chem. Phys. , vol.78 , pp. 470
    • Calef, D.F.1    Wolynes, P.G.2
  • 14
    • 36549103488 scopus 로고
    • 0021-9606 10.1063/1.454383
    • S. Lee and J. T. Hynes, J. Chem. Phys. 0021-9606 10.1063/1.454383 88, 6853 (1988).
    • (1988) J. Chem. Phys. , vol.88 , pp. 6853
    • Lee, S.1    Hynes, J.T.2
  • 15
    • 84962439196 scopus 로고
    • 0021-9606 10.1063/1.459665
    • H. J. Kim and J. T. Hynes, J. Chem. Phys. 0021-9606 10.1063/1.459665 93, 5194 (1990).
    • (1990) J. Chem. Phys. , vol.93 , pp. 5194
    • Kim, H.J.1    Hynes, J.T.2
  • 16
    • 3042780720 scopus 로고    scopus 로고
    • 0066-426X 10.1146/annurev.physchem.55.091602.094446
    • J. M. Mayer, Annu. Rev. Phys. Chem. 0066-426X 10.1146/annurev.physchem. 55.091602.094446 55, 363 (2004).
    • (2004) Annu. Rev. Phys. Chem. , vol.55 , pp. 363
    • Mayer, J.M.1
  • 20
    • 33748381480 scopus 로고    scopus 로고
    • 0022-3654 10.1021/jp961025g
    • R. I. Cukier, J. Phys. Chem. 0022-3654 10.1021/jp961025g 100, 15428 (1996).
    • (1996) J. Phys. Chem. , vol.100 , pp. 15428
    • Cukier, R.I.1
  • 21
    • 0032234424 scopus 로고    scopus 로고
    • 0066-426X 10.1146/annurev.physchem.49.1.337
    • R. I. Cukier and D. G. Nocera, Annu. Rev. Phys. Chem. 0066-426X 10.1146/annurev.physchem.49.1.337 49, 337 (1998).
    • (1998) Annu. Rev. Phys. Chem. , vol.49 , pp. 337
    • Cukier, R.I.1    Nocera, D.G.2
  • 28
    • 0032562331 scopus 로고    scopus 로고
    • 0009-2614 10.1016/S0009-2614(98)00160-2
    • S. Nagaoka, Y. Nishioku, and K. Mukai, Chem. Phys. Lett. 0009-2614 10.1016/S0009-2614(98)00160-2 287, 70 (1998); S. Nagaoka, J. Phys. Chem. B 104, 856 (2000). 1520-6106
    • (1998) Chem. Phys. Lett. , vol.287 , pp. 70
    • Nagaoka, S.1    Nishioku, Y.2    Mukai, K.3
  • 29
    • 0000585547 scopus 로고    scopus 로고
    • 1520-6106
    • S. Nagaoka, Y. Nishioku, and K. Mukai, Chem. Phys. Lett. 0009-2614 10.1016/S0009-2614(98)00160-2 287, 70 (1998); S. Nagaoka, J. Phys. Chem. B 104, 856 (2000). 1520-6106
    • (2000) J. Phys. Chem. B , vol.104 , pp. 856
    • Nagaoka, S.1
  • 30
    • 34547139145 scopus 로고    scopus 로고
    • 0021-9606 10.1063/1.2188395
    • S. Presś and R. Silbey, J. Chem. Phys. 0021-9606 10.1063/1.2188395 124, 164504 (2006).
    • (2006) J. Chem. Phys. , vol.124 , pp. 164504
    • Presś, S.1    Silbey, R.2
  • 32
    • 4344567754 scopus 로고    scopus 로고
    • edited by F.Hirata (Kluwer, Netherlands
    • Molecular Theory of Solvation, edited by, F. Hirata, (Kluwer, Netherlands, 2003).
    • (2003) Molecular Theory of Solvation
  • 34
    • 0030908729 scopus 로고    scopus 로고
    • 0002-7863 10.1021/ja9635342
    • A. Morita and S. Kato, J. Am. Chem. Soc. 0002-7863 10.1021/ja9635342 119, 4021 (1997).
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 4021
    • Morita, A.1    Kato, S.2
  • 35
    • 0000436837 scopus 로고    scopus 로고
    • 0021-9606 10.1063/1.476096
    • A. Morita and S. Kato, J. Chem. Phys. 0021-9606 10.1063/1.476096 108, 6809 (1998).
    • (1998) J. Chem. Phys. , vol.108 , pp. 6809
    • Morita, A.1    Kato, S.2
  • 36
    • 33747615023 scopus 로고    scopus 로고
    • 0021-9606 10.1063/1.2219746
    • T. Ishida and A. Morita, J. Chem. Phys. 0021-9606 10.1063/1.2219746 125, 074112 (2006).
    • (2006) J. Chem. Phys. , vol.125 , pp. 074112
    • Ishida, T.1    Morita, A.2
  • 37
    • 34250705260 scopus 로고    scopus 로고
    • In practice, we make the argument of the delta function in dimensionless as δ [(V′ -V (R)) φ0], where φ0 is an arbitrary unit of electrostatic potential, e.g., φ0 =1 V. However, we omit this factor throughout for notational simplicity (see also Ref. 44).
    • In practice, we make the argument of the delta function in Eq. dimensionless as δ [(V′ -V (R)) φ0], where φ0 is an arbitrary unit of electrostatic potential, e.g., φ0 =1 V. However, we omit this factor throughout for notational simplicity (see also Ref.).
  • 38
    • 34250698403 scopus 로고    scopus 로고
    • Zv is included so that F (Ru, V′) has a well-defined thermodynamic limit.
    • Zv is included so that F (Ru, V′) has a well-defined thermodynamic limit.
  • 40
  • 41
    • 0000354626 scopus 로고
    • 0021-9606 10.1063/1.459255
    • G. King and A. Warshel, J. Chem. Phys. 0021-9606 10.1063/1.459255 93, 8682 (1990).
    • (1990) J. Chem. Phys. , vol.93 , pp. 8682
    • King, G.1    Warshel, A.2
  • 42
    • 33845184937 scopus 로고
    • 0022-3654 10.1021/j100343a002
    • E. A. Carter and J. T. Hynes, J. Phys. Chem. 0022-3654 10.1021/j100343a002 93, 2184 (1989).
    • (1989) J. Phys. Chem. , vol.93 , pp. 2184
    • Carter, E.A.1    Hynes, J.T.2
  • 45
    • 0001456049 scopus 로고
    • 0022-3654 10.1021/j100357a005
    • M. Tachiya, J. Phys. Chem. 0022-3654 10.1021/j100357a005 93, 7050 (1989); M. Tachiya, J. Phys. Chem. 0022-3654 10.1021/j100124a023 97, 5911 (1993).
    • (1989) J. Phys. Chem. , vol.93 , pp. 7050
    • Tachiya, M.1
  • 46
    • 33751385900 scopus 로고
    • 0022-3654 10.1021/j100124a023
    • M. Tachiya, J. Phys. Chem. 0022-3654 10.1021/j100357a005 93, 7050 (1989); M. Tachiya, J. Phys. Chem. 0022-3654 10.1021/j100124a023 97, 5911 (1993).
    • (1993) J. Phys. Chem. , vol.97 , pp. 5911
    • Tachiya, M.1
  • 47
    • 0001254876 scopus 로고
    • 0021-9606 10.1063/1.470232
    • H. -X. Zhou and A. Szabo, J. Chem. Phys. 0021-9606 10.1063/1.470232 103, 3481 (1995).
    • (1995) J. Chem. Phys. , vol.103 , pp. 3481
    • Zhou, H.-X.1    Szabo, A.2
  • 48
    • 17444417473 scopus 로고    scopus 로고
    • 1089-5647 10.1021/jp0455879
    • J. Blumberger and M. Sprik, J. Phys. Chem. B 1089-5647 10.1021/jp0455879 109, 6793 (2005).
    • (2005) J. Phys. Chem. B , vol.109 , pp. 6793
    • Blumberger, J.1    Sprik, M.2
  • 49
    • 51149213748 scopus 로고
    • 0021-9606 10.1063/1.1678998
    • P. P. Schmidt, J. Chem. Phys. 0021-9606 10.1063/1.1678998 58, 4384 (1973).
    • (1973) J. Chem. Phys. , vol.58 , pp. 4384
    • Schmidt, P.P.1
  • 50
    • 2542566495 scopus 로고
    • 0021-9606 10.1063/1.447418
    • R. A. Marcus, J. Chem. Phys. 0021-9606 10.1063/1.447418 81, 4494 (1984).
    • (1984) J. Chem. Phys. , vol.81 , pp. 4494
    • Marcus, R.A.1
  • 53
    • 84893169025 scopus 로고
    • 0192-8651 10.1002/jcc.540141112
    • M. W. Schmidt, J. Comput. Chem. 0192-8651 10.1002/jcc.540141112 14, 1347 (1993).
    • (1993) J. Comput. Chem. , vol.14 , pp. 1347
    • Schmidt, M.W.1
  • 54
    • 84913395815 scopus 로고
    • 0026-8976 10.1080/00268978800100371
    • W. L. Jorgensen and J. M. Briggs, Mol. Phys. 0026-8976 10.1080/00268978800100371 63, 547 (1988).
    • (1988) Mol. Phys. , vol.63 , pp. 547
    • Jorgensen, W.L.1    Briggs, J.M.2
  • 55
    • 0029011701 scopus 로고
    • 0002-7863 10.1021/ja00124a002
    • W. D. Cornell, J. Am. Chem. Soc. 0002-7863 10.1021/ja00124a002 117, 5179 (1995).
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 5179
    • Cornell, W.D.1
  • 56
    • 27744563072 scopus 로고    scopus 로고
    • See M. Higashi and S. Kato, J. Phys. Chem. A 109, 9867 (2005) for the MP2 correction of the equilibrium free energy.
    • (2005) J. Phys. Chem. A , vol.109 , pp. 9867
    • Higashi, M.1    Kato, S.2
  • 57
  • 58
    • 34250730737 scopus 로고    scopus 로고
    • More precisely, was obtained by calculating EK (r, X) rather than FK (r, X) as a function of xby assuming the probe-point approximation (i.e., solvent self-energy is constant as a function of r).
    • More precisely, Fig. was obtained by calculating EK (rp, X) rather than FK (rp, X) as a function of xp by assuming the probe-point approximation (i.e., solvent self-energy is constant as a function of rp).
  • 60
    • 34250693572 scopus 로고    scopus 로고
    • Δ μ0 can be calculated in various approximate ways, e.g., by using a linear-response approximation (Ref. 8).
    • Δ μ0 can be calculated in various approximate ways, e.g., by using a linear-response approximation (Ref.).
  • 61
    • 0030134110 scopus 로고    scopus 로고
    • 0022-3654 10.1021/jp953640a
    • J. Aqvist and T. Hansson, J. Phys. Chem. 0022-3654 10.1021/jp953640a 100, 9512 (1996).
    • (1996) J. Phys. Chem. , vol.100 , pp. 9512
    • Aqvist, J.1    Hansson, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.