Organization of the variable region of the immunoglobulin heavy-chain gene locus of the rat

Immunogenetics

Volumn 62, Issue 7, 2010, Pages 479-486

  Hendricks, Jacobus ^a   Terpstra, Peter ^a   Dammers, Peter M ^a,b   Somasundaram, Rajesh ^a   Visser, Annie ^a   Stoel, Maaike ^a   Bos, Nicolaas A ^a   Kroese, Frans G M ^a  

^a UNIVERSITY MEDICAL CENTER GRONINGEN   (Netherlands)

^b HANZE UNIVERSITY OF APPLIED SCIENCES   (Netherlands)

Author keywords

Immunoglobulin heavy chain genes; Immunoglobulin locus; Rat

Indexed keywords

TRANSLOCON;

ANIMAL CELL; ARTICLE; GENE LOCUS; GENE MAPPING; GENOME; IMMUNOGLOBULIN HEAVY CHAIN GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RAT;

ANIMALS; CHROMOSOME MAPPING; GENES, IMMUNOGLOBULIN HEAVY CHAIN; IMMUNOGLOBULIN VARIABLE REGION; RATS; RATS, INBRED BN; SEQUENCE ANALYSIS, DNA;

RATTUS; RATTUS NORVEGICUS;

EID: 77955682940     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-010-0448-x     Document Type: Article

References (33)

1. SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool J Mol Biol 215 403 410 2231712 1:CAS:528:DyaK3MXitVGmsA%3D%3D
2. PH Brodeur R Riblet 1984 The immunoglobulin heavy chain variable region (IgH-V) locus in the mouse: I. One hundred IgH-V genes comprise seven families of homologous genes Eur J Immunol 14 922 930 10.1002/eji.1830141012 6092095 1:CAS:528:DyaL2MXhvVyjuw%3D%3D
3. JE Butler J Sun N Wertz M Sinkora 2006 Antibody repertoire development in swine Dev Comp Immunol 30 199 221 10.1016/j.dci.2005.06.025 16168480 1:CAS:528:DC%2BD2MXhtVKisL7F (Pubitemid 41408493)
4. PM Dammers FG Kroese 2001 Evolutionary relationship between rat and mouse immunoglobulin IGHV5 subgroup genes (PC7183) and human IGHV3 subgroup genes Immunogenetics 53 511 517 10.1007/s002510100346 11685463 1:CAS:528: DC%2BD3MXosFShu78%3D (Pubitemid 32906992)
5. H genes and are ligand selected Curr Top Microbiol Immunol 252 107 117 11125468 1:CAS:528:DC%2BD3cXovVGltrY%3D
6. H genes and are ligand selected J Immunol 165 6156 6169 11086049 1:CAS:528:DC%2BD3cXosFOiuro%3D
7. H-gene usage of autoantibodies in mercuric chloride-induced membranous glomerulopathy in the rat Immunology 103 199 209 10.1046/j.1365-2567. 2001.01231.x 11412307 1:CAS:528:DC%2BD3MXktlSrt74%3D (Pubitemid 32521349)
8. S Das M Nozawa J Klein M Nei 2008 Evolutionary dynamics of the immunoglobulin heavy chain variable region genes in vertebrates Immunogenetics 60 47 55 10.1007/s00251-007-0270-2 18196235 1:CAS:528:DC%2BD1cXotlKrtA%3D%3D
9. V Dufour S Malinge F Nau 1996 The sheep Ig variable region repertoire consists of a single VH family J Immunol 156 2163 2170 8690905 1:CAS:528:DyaK28XhsFCnu7k%3D
10. MF Flajnik 2002 Comparative analyses of immunoglobulin genes: surprises and portents Nat Rev Immunol 2 688 698 10.1038/nri889 12209137 1:CAS:528:DC%2BD38Xmslant7o%3D (Pubitemid 37328726)
11. RA Gibbs GM Weinstock ML Metzker DM Muzny EJ Sodergren S Scherer G Scott D Steffen KC Worley PE Burch G Okwuonu S Hines L Lewis C DeRamo O Delgado S Dugan-Rocha G Miner M Morgan A Hawes R Gill, et al. 2004 Genome sequence of the Brown Norway rat yields insights into mammalian evolution Nature 428 493 521 10.1038/nature02426 15057822 1:CAS:528:DC%2BD2cXis1Gks7o%3D (Pubitemid 38480529)
12. V Giudicelli D Chaume MP Lefranc 2004 IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis Nucleic Acids Res 32 W435 W440 10.1093/nar/gkh412 15215425 1:CAS:528:DC%2BD2cXlvFKnu78%3D (Pubitemid 38997372)
13. E Gontier O Ayrault I Godet F Nau V Ladeveze 2005 Developmental progression of immunoglobulin heavy chain diversity in sheep Vet Immunol Immunopathol 103 31 51 10.1016/j.vetimm.2004.08.013 15626460 1:CAS:528:DC%2BD2MXktFCr (Pubitemid 40038220)
14. P Havlak R Chen KJ Durbin A Egan Y Ren XZ Song GM Weinstock RA Gibbs 2004 The Atlas genome assembly system Genome Res 14 721 732 10.1101/gr.2264004 15060016 1:CAS:528:DC%2BD2cXjt1yjt7Y%3D (Pubitemid 38500246)
15. CM Johnston AL Wood DJ Bolland AE Corcoran 2006 Complete sequence assembly and characterization of the C57BL/6 mouse Ig heavy chain V region J Immunol 176 4221 4234 16547259 1:CAS:528:DC%2BD28Xis1eqsrw%3D
16. D Karolchik RM Kuhn R Baertsch GP Barber H Clawson M Diekhans B Giardine RA Harte AS Hinrichs F Hsu KM Kober W Miller JS Pedersen A Pohl BJ Raney B Rhead KR Rosenbloom KE Smith M Stanke A Thakkapallayil, et al. 2008 The UCSC genome browser database: 2008 update Nucleic Acids Res 36 D773 D779 10.1093/nar/gkm966 18086701 1:CAS:528:DC%2BD1cXhtVWju7g%3D (Pubitemid 351149822)
17. WJ Kent 2002 BLAT-the BLAST-like alignment tool Genome Res 12 656 664 11932250 1:CAS:528:DC%2BD38XivVemtLw%3D
18. N Kothapalli DD Norton SD Fugmann 2008 Cutting edge: a cis-acting DNA element targets AID-mediated sequence diversification to the chicken Ig light chain gene locus J Immunol 180 2019 2023 18250404 1:CAS:528:DC%2BD1cXhsVShtrc%3D
19. S Kumar SB Hedges 1998 A molecular timescale for vertebrate evolution Nature 392 917 920 10.1038/31927 9582070 1:CAS:528:DyaK1cXjtV2jur8%3D (Pubitemid 28232061)
20. P Lang R Mocikat 1991 Immunoglobulin heavy-chain joining genes in the rat: comparison with mouse and human Gene 102 261 264 10.1016/0378-1119(91) 90087-R 1908401 1:CAS:528:DyaK3MXmt1GitrY%3D
21. MP Lefranc V Giudicelli C Ginestoux J Bodmer W Muller R Bontrop M Lemaitre A Malik V Barbie D Chaume 1999 IMGT, the international ImMunoGeneTics database Nucleic Acids Res 27 209 212 10.1093/nar/27.1.209 9847182 1:CAS:528:DyaK1MXpsVKisA%3D%3D (Pubitemid 29209441)
22. RG Mage D Lanning KL Knight 2006 B cell and antibody repertoire development in rabbits: the requirement of gut-associated lymphoid tissues Dev Comp Immunol 30 137 153 10.1016/j.dci.2005.06.017 16098588 1:CAS:528: DC%2BD2MXhtVKisL7P (Pubitemid 41405791)
23. JJ Marchalonis SF Schluter RM Bernstein S Shen AB Edmundson 1998 Phylogenetic emergence and molecular evolution of the immunoglobulin family Adv Immunol 70 417 506 10.1016/S0065-2776(08)60392-2 9755343 1:CAS:528:DyaK1MXmsVOm
24. F Matsuda K Ishii P Bourvagnet K Kuma H Hayashida T Miyata T Honjo 1998 The complete nucleotide sequence of the human immunoglobulin heavy chain variable region locus J Exp Med 188 2151 2162 10.1084/jem.188.11.2151 9841928 1:CAS:528:DyaK1cXnvFOhu7c%3D (Pubitemid 28562531)
25. D Opstelten GJ Deenen J Rozing SV Hunt 1986 B lymphocyte-associated antigens on terminal deoxynucleotidyl transferase-positive cells and pre-B cells in bone marrow of the rat J Immunol 137 76 84 3086459 1:CAS:528: DyaL28XksF2gsb4%3D
26. H gene family Mol Biol Evol 11 469 482 8015440 1:CAS:528:DyaK2cXktVOjurk%3D
27. CA Reynaud C Garcia WR Hein JC Weill 1995 Hypermutation generating the sheep immunoglobulin repertoire is an antigen-independent process Cell 80 115 125 10.1016/0092-8674(95)90456-5 7813007 1:CAS:528:DyaK2MXjtFegurg%3D
28. H gene family, related to mammalian group, I, clan, II, is identified in cattle Mol Immunol 34 641 651 10.1016/S0161-5890(97)00055-2 9393967 1:CAS:528:DyaK2sXnsFSksL0%3D (Pubitemid 27512878)
29. SS Saini B Allore RM Jacobs A Kaushik 1999 Exceptionally long CDR3H region with multiple cysteine residues in functional bovine IgM antibodies Eur J Immunol 29 2420 2426 10.1002/(SICI)1521-4141(199908)29:08<2420::AID- IMMU2420>3.0.CO;2-A 10458755 1:CAS:528:DyaK1MXltFSltrc%3D (Pubitemid 29378111)
30. M Stoel WN Evenhuis FG Kroese NA Bos 2008 Rat salivary gland reveals a more restricted IgA repertoire than ileum Mol Immunol 45 719 727 10.1016/j.molimm.2007.07.001 17692918 1:CAS:528:DC%2BD2sXhtFalsLfJ (Pubitemid 47498582)
31. SN Twigger KD Pruitt XM Fernandez-Suarez D Karolchik KC Worley DR Maglott G Brown G Weinstock RA Gibbs J Kent E Birney HJ Jacob 2008 What everybody should know about the rat genome and its online resources Nat Genet 40 523 527 10.1038/ng0508-523 18443589 1:CAS:528:DC%2BD1cXltFyks7g%3D (Pubitemid 351601234)
32. KC Worley GM Weinstock RA Gibbs 2008 Rats in the genomic era Physiol Genomics 32 273 282 18029439 1:CAS:528:DC%2BD1cXmt1Wjur0%3D
33. GD Yancopoulos FW Alt 1986 Regulation of the assembly and expression of variable-region genes Annu Rev Immunol 4 339 368 10.1146/annurev.iy.04.040186. 002011 3085692 1:CAS:528:DyaL28XktF2nurg%3D