-
1
-
-
0037569250
-
A consistent potential energy parameter set for lipids: dipalmitoyl-phosphatidylcholine as a benchmark of the GROMOS96 45A3 force Weld
-
Chandrasekhar I, Kastenholz M, Lins RD, Oostenbrink C, Schuler LD, van Gunsteren WF (2003) A consistent potential energy parameter set for lipids: dipalmitoyl-phosphatidylcholine as a benchmark of the GROMOS96 45A3 force Weld. Eur Biophys J 32:67-77
-
(2003)
Eur Biophys J
, vol.32
, pp. 67-77
-
-
Chandrasekhar, I.1
Kastenholz, M.2
Lins, R.D.3
Oostenbrink, C.4
Schuler, L.D.5
Van Gunsteren, W.F.6
-
2
-
-
0027174989
-
Human immunodeWciency virus type 1 Vpu protein induces degradation of CD4 in vitro: The cytoplasmic domain contributes to Vpu sensitivity
-
Chen M-Y, Maldarelli F, Martin MA, Strebel K (1993) Human immunodeWciency virus type 1 Vpu protein induces degradation of CD4 in vitro: the cytoplasmic domain contributes to Vpu sensitivity. J Virol 67:3877-3884
-
(1993)
J Virol
, vol.67
, pp. 3877-3884
-
-
Chen, M.-Y.1
Maldarelli, F.2
Martin, M.A.3
Strebel, K.4
-
3
-
-
0023729963
-
Identi- Wcation of a protein encoded by the vpu gene of HIV-1
-
doi:10.1038/334532a0
-
Cohen EA, Terwilliger EF, Sodroski JG, Haseltine WA (1988) Identi- Wcation of a protein encoded by the vpu gene of HIV-1. Nature 334:532-534. doi:10.1038/334532a0
-
(1988)
Nature
, vol.334
, pp. 532-534
-
-
Cohen, E.A.1
Terwilliger, E.F.2
Sodroski, J.G.3
Haseltine, W.A.4
-
4
-
-
0029794387
-
The Vpu protein of human immunodeWciency virus type 1 forms cation-selective ion channels
-
Ewart GD, Sutherland T, Gage PW, Cox GB (1996) The Vpu protein of human immunodeWciency virus type 1 forms cation-selective ion channels. J Virol 70:7108-7115
-
(1996)
J Virol
, vol.70
, pp. 7108-7115
-
-
Ewart, G.D.1
Sutherland, T.2
Gage, P.W.3
Cox, G.B.4
-
5
-
-
0041333817
-
Vpu from HIV-1 on an atomic scale: Experiments and computer simulations
-
doi:10.1016/S0014-5793(03)00782-8
-
Fischer WB (2003) Vpu from HIV-1 on an atomic scale: experiments and computer simulations. FEBS Lett 552:39-46. doi:10.1016/ S0014-5793(03)00782-8
-
(2003)
FEBS Lett
, vol.552
, pp. 39-46
-
-
Fischer, W.B.1
-
6
-
-
39749091440
-
Viral membrane proteins: Structure, function and drug design
-
In: Atassi MZ (ed), Kluwer Academic/Plenum, New York
-
Fischer WB (2005) Viral membrane proteins: structure, function and drug design. In: Atassi MZ (ed) Protein reviews, vol 1. Kluwer Academic/Plenum, New York
-
(2005)
Protein Reviews
, vol.1
-
-
Fischer, W.B.1
-
8
-
-
0028859076
-
Functional analysis of the phosphorylation sites on the human immunodeWciency virus type-1 Vpu protein
-
Friborg J, Ladha A, Göttlinger H, Haseltine WA, Cohen EA (1995) Functional analysis of the phosphorylation sites on the human immunodeWciency virus type-1 Vpu protein. J Acquir Immune DeWc Syndr Hum Retrovirol 8:10-22
-
(1995)
J Acquir Immune DeWc Syndr Hum Retrovirol
, vol.8
, pp. 10-22
-
-
Friborg, J.1
Ladha, A.2
Göttlinger, H.3
Haseltine, W.A.4
Cohen, E.A.5
-
9
-
-
1942502838
-
Mutual functional destruction of HIV-1 Vpu and host TASK-1 channel
-
doi:10.1016/S1097-2765(04)00183-2
-
Hsu K, Seharaseyon J, Dong P, Bour S, Marbán E (2004) Mutual functional destruction of HIV-1 Vpu and host TASK-1 channel. Mol Cell 14:259-267. doi:10.1016/S1097-2765(04)00183-2
-
(2004)
Mol Cell
, vol.14
, pp. 259-267
-
-
Hsu, K.1
Seharaseyon, J.2
Dong, P.3
Bour, S.4
Marbán, E.5
-
10
-
-
39549085136
-
Mechanism of selectivity in aquaporins and aquaglycoporins
-
doi:10.1073/pnas.0707662104
-
Hub JS, de Groot BL (2008) Mechanism of selectivity in aquaporins and aquaglycoporins. Proc Natl Acad Sci USA 105:1198-1203. doi:10.1073/pnas. 0707662104
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 1198-1203
-
-
Hub, J.S.1
De Groot, B.L.2
-
11
-
-
35548939073
-
Oligomerization of the human immunodeWciency virus type I (HIV-1) Vpu protein-a genetic, biochemical and biophysical analysis
-
doi:10.1186/1743-422X-4-81
-
Hussain A, Das SR, Tanwar C, Jameel S (2007) Oligomerization of the human immunodeWciency virus type I (HIV-1) Vpu protein-a genetic, biochemical and biophysical analysis. Virol J 4:1-11. doi:10.1186/1743-422X-4-81
-
(2007)
Virol J
, vol.4
, pp. 1-11
-
-
Hussain, A.1
Das, S.R.2
Tanwar, C.3
Jameel, S.4
-
12
-
-
52649086195
-
Exploring the conformational space of Vpu from HIV-1: A versatile and adaptable protein
-
doi:10.1002/jcc.20986
-
Krüger J, Fischer WB (2008) Exploring the conformational space of Vpu from HIV-1: a versatile and adaptable protein. J Comput Chem 29:2416-2424. doi:10.1002/jcc.20986
-
(2008)
J Comput Chem
, vol.29
, pp. 2416-2424
-
-
Krüger, J.1
Fischer, W.B.2
-
13
-
-
0032819359
-
Vpu transmembrane peptide structure obtained by site-speciWc fourier transform infrared dichroism and global molecular dynamics searching
-
doi:10.1016/S0006-3495(99)77007-4
-
Kukol A, Arkin IT (1999) Vpu transmembrane peptide structure obtained by site-speciWc fourier transform infrared dichroism and global molecular dynamics searching. Biophys J 77:1594-1601. doi:10.1016/S0006-3495(99)77007-4
-
(1999)
Biophys J
, vol.77
, pp. 1594-1601
-
-
Kukol, A.1
Arkin, I.T.2
-
14
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl E, Hess B, Van der Spoel D (2001) GROMACS 3.0: a package for molecular simulation and trajectory analysis. J Mol Model 7:306-317
-
(2001)
J Mol Model
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
Van Der Spoel, D.3
-
15
-
-
0036181837
-
Expression, puriWcation, and activities of full-length and truncated versions of the integral membrane protein Vpu from HIV-1
-
doi:10.1110/ps.37302
-
Ma C, Marassi FM, Jones DH, Straus SK, Bour S, Strebel K, Schubert U, Oblatt-Montal M, Montal M, Opella SJ (2002) Expression, puriWcation, and activities of full-length and truncated versions of the integral membrane protein Vpu from HIV-1. Protein Sci 11:546-557. doi:10.1110/ps.37302
-
(2002)
Protein Sci
, vol.11
, pp. 546-557
-
-
Ma, C.1
Marassi, F.M.2
Jones, D.H.3
Straus, S.K.4
Bour, S.5
Strebel, K.6
Schubert, U.7
Oblatt-Montal, M.8
Montal, M.9
Opella, S.J.10
-
16
-
-
0030587419
-
Interaction between the cytoplasmic domains of HIV-1 Vpu and CD4: Role of Vpu residues involved in CD4 interaction and in vitro CD4 degradation
-
doi:10.1006/viro.1996.0491
-
Margottin F, Benichou S, Durand H, Richard V, Liu LX, Benarous R (1996) Interaction between the cytoplasmic domains of HIV-1 Vpu and CD4: role of Vpu residues involved in CD4 interaction and in vitro CD4 degradation. Virology 223:381-386. doi:10.1006/viro.1996.0491
-
(1996)
Virology
, vol.223
, pp. 381-386
-
-
Margottin, F.1
Benichou, S.2
Durand, H.3
Richard, V.4
Liu, L.X.5
Benarous, R.6
-
17
-
-
34250712843
-
Towards a mechanism of function of the viral ion channel Vpu from HIV-1
-
Mehnert T, Lam YH, Judge PJ, Routh A, Fischer D, Watts A, Fischer WB (2007) Towards a mechanism of function of the viral ion channel Vpu from HIV-1. J Biomol Struct Dyn 24:589-596
-
(2007)
J Biomol Struct Dyn
, vol.24
, pp. 589-596
-
-
Mehnert, T.1
Lam, Y.H.2
Judge, P.J.3
Routh, A.4
Fischer, D.5
Watts, A.6
Fischer, W.B.7
-
18
-
-
39749180320
-
Biophysical characterisation of Vpu from HIV-1 suggests a channel-pore dualism
-
doi:10.1002/prot.21642
-
Mehnert T, Routh A, Judge PJ, Lam YH, Fischer D, Watts A, Fischer WB (2008) Biophysical characterisation of Vpu from HIV-1 suggests a channel-pore dualism. Proteins 70:1488-1497. doi:10.1002/prot.21642
-
(2008)
Proteins
, vol.70
, pp. 1488-1497
-
-
Mehnert, T.1
Routh, A.2
Judge, P.J.3
Lam, Y.H.4
Fischer, D.5
Watts, A.6
Fischer, W.B.7
-
19
-
-
0042335653
-
Structure-function correlates of Vpu, a membrane protein of HIV-1
-
doi:10.1016/S0014-5793(03)00849-4
-
Montal M (2003) Structure-function correlates of Vpu, a membrane protein of HIV-1. FEBS Lett 552:47-53. doi:10.1016/S0014- 5793(03)00849-4
-
(2003)
FEBS Lett
, vol.552
, pp. 47-53
-
-
Montal, M.1
-
20
-
-
38549095979
-
Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu
-
doi:10.1038/nature06553
-
Neil SJD, Zang T, Bieniasz PD (2008) Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu. Nature 451:425-431. doi:10.1038/nature06553
-
(2008)
Nature
, vol.451
, pp. 425-431
-
-
Neil, S.J.D.1
Zang, T.2
Bieniasz, P.D.3
-
21
-
-
0037027306
-
+ channel helical bundle combining precise orientational and distance restraints from solid state NMR
-
doi:10.1021/bi0262799
-
+ channel helical bundle combining precise orientational and distance restraints from solid state NMR. Biochemistry 41:13170-13177. doi:10.1021/bi0262799
-
(2002)
Biochemistry
, vol.41
, pp. 13170-13177
-
-
Nishimura, K.1
Kim, S.2
Zhang, L.3
Cross, T.A.4
-
22
-
-
51649099314
-
Not only enthalpy: Large entropy contribution to ion permeation barriers in single-Wle channels
-
doi:10.1529/biophysj.108.130609
-
Portella G, Hub JS, Vesper MD, De Groot BL (2008) Not only enthalpy: large entropy contribution to ion permeation barriers in single-Wle channels. Biophys J 95:2275-2282. doi:10.1529/biophysj. 108.130609
-
(2008)
Biophys J
, vol.95
, pp. 2275-2282
-
-
Portella, G.1
Hub, J.S.2
Vesper, M.D.3
De Groot, B.L.4
-
23
-
-
0028857927
-
Augmentation of virus secretion by the human immunodeWciency virus type 1 Vpu protein is cell type independent and occurs in cultured human primary macrophages and lymphocytes
-
Schubert U, Clouse KA, Strebel K (1995) Augmentation of virus secretion by the human immunodeWciency virus type 1 Vpu protein is cell type independent and occurs in cultured human primary macrophages and lymphocytes. J Virol 69:7699-7711
-
(1995)
J Virol
, vol.69
, pp. 7699-7711
-
-
Schubert, U.1
Clouse, K.A.2
Strebel, K.3
-
24
-
-
0030069139
-
The two biological activities of human immunodeWciency virus type 1 Vpu protein involve two separable structural domains
-
Schubert U, Bour S, Ferrer-Montiel AV, Montal M, Maldarelli F, Strebel K (1996a) The two biological activities of human immunodeWciency virus type 1 Vpu protein involve two separable structural domains. J Virol 70:809-819
-
(1996)
J Virol
, vol.70
, pp. 809-819
-
-
Schubert, U.1
Bour, S.2
Ferrer-Montiel, A.V.3
Montal, M.4
Maldarelli, F.5
Strebel, K.6
-
25
-
-
0030602182
-
IdentiWcation of an ion channel activity of the Vpu transmembrane domain and its involvement in the regulation of virus release from HIV-1-infected cells
-
doi:10.1016/S0014-5793(96)01146-5
-
Schubert U, Ferrer-Montiel AV, Oblatt-Montal M, Henklein P, Strebel K, Montal M (1996b) IdentiWcation of an ion channel activity of the Vpu transmembrane domain and its involvement in the regulation of virus release from HIV-1-infected cells. FEBS Lett 398:12-18. doi:10.1016/S0014-5793(96)01146-5
-
(1996)
FEBS Lett
, vol.398
, pp. 12-18
-
-
Schubert, U.1
Ferrer-Montiel, A.V.2
Oblatt-Montal, M.3
Henklein, P.4
Strebel, K.5
Montal, M.6
-
26
-
-
0035425883
-
An improved GROMOS96 force Weld for aliphatic hydrocarbons in the condensed phase
-
Schuler LD, Daura X, van Gunsteren WF (2001) An improved GROMOS96 force Weld for aliphatic hydrocarbons in the condensed phase. J Computational Chem 22:1205-1218
-
(2001)
J Computational Chem
, vol.22
, pp. 1205-1218
-
-
Schuler, L.D.1
Daura, X.2
Van Gunsteren, W.F.3
-
27
-
-
0037960370
-
Molecular dynamics simulations on the Wrst two helices of Vpu from HIV-1
-
doi:10.1016/S0006-3495(03)70052-6
-
Sramala I, Lemaitre V, Faraldo-Gomez JD, Vincent S, Watts A, Fischer WB (2003) Molecular dynamics simulations on the Wrst two helices of Vpu from HIV-1. Biophys J 84:3276-3284. doi:10.1016/S0006-3495(03)70052-6
-
(2003)
Biophys J
, vol.84
, pp. 3276-3284
-
-
Sramala, I.1
Lemaitre, V.2
Faraldo-Gomez, J.D.3
Vincent, S.4
Watts, A.5
Fischer, W.B.6
-
28
-
-
0023677668
-
Novel gene of HIV-1, vpu, and its 16-kilodalton product
-
doi:10.1126/science.3261888
-
Strebel K, Klimkait T, Martin MA (1988) Novel gene of HIV-1, vpu, and its 16-kilodalton product. Science 241:1221-1223. doi:10. 1126/science.3261888
-
(1988)
Science
, vol.241
, pp. 1221-1223
-
-
Strebel, K.1
Klimkait, T.2
Martin, M.A.3
-
29
-
-
13444271681
-
ReWned structure of the nicotinic acetylcholine receptor at 4 Å resolution
-
doi:10.1016/j.jmb.2004.12.031
-
Unwin N (2005) ReWned structure of the nicotinic acetylcholine receptor at 4 Å resolution. J Mol Biol 346:967-989. doi:10.1016/ j.jmb.2004.12.031
-
(2005)
J Mol Biol
, vol.346
, pp. 967-989
-
-
Unwin, N.1
-
30
-
-
41849116366
-
The interferon-induced protein BST-2 restricts HIV-1 release and is downregulated from the cell surface by the viral Vpu protein
-
doi:10.1016/j.chom.2007.12.002
-
van Damme N, GoV D, Katsura C, Jorgensen RL, Mitchell R, Johnson MC, Stephens EB, Guatelli J (2008) The interferon-induced protein BST-2 restricts HIV-1 release and is downregulated from the cell surface by the viral Vpu protein. Cell Host Microbe 3:1-8. doi:10.1016/j.chom.2007.12.002
-
(2008)
Cell Host Microbe
, vol.3
, pp. 1-8
-
-
Van Damme, N.1
GoV, D.2
Katsura, C.3
Jorgensen, R.L.4
Mitchell, R.5
Johnson, M.C.6
Stephens, E.B.7
Guatelli, J.8
-
31
-
-
27344454932
-
Gromacs: Fast, xexible and free
-
doi:10.1002/jcc.20291
-
van der Spoel D, Lindahl E, Hess B, Groenhof G, Mark AE, Berendsen HJC (2005) Gromacs: fast, Xexible and free. J Comput Chem 26:1701-1718. doi:10.1002/jcc.20291
-
(2005)
J Comput Chem
, vol.26
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.C.6
-
32
-
-
0033586794
-
Solution structure and orientation of the transmembrane anchor domain of the HIV-1-encoded virus protein U by high resolution and solid-state NMR spectroscopy
-
doi:10.1021/bi982755c
-
Wray V, Kinder R, Federau T, Henklein P, Bechinger B, Schubert U (1999) Solution structure and orientation of the transmembrane anchor domain of the HIV-1-encoded virus protein U by high resolution and solid-state NMR spectroscopy. Biochemistry 38:5272-5282. doi:10.1021/bi982755c
-
(1999)
Biochemistry
, vol.38
, pp. 5272-5282
-
-
Wray, V.1
Kinder, R.2
Federau, T.3
Henklein, P.4
Bechinger, B.5
Schubert, U.6
|