메뉴 건너뛰기




Volumn 405, Issue 2, 2010, Pages 314-321

Comparison of selection pressures on the HA gene of pandemic (2009) and seasonal human and swine influenza A H1 subtype viruses

Author keywords

Evolution; Hemagglutinin; Influenza; Pandemic; Phylogeny

Indexed keywords

INFLUENZA VIRUS HEMAGGLUTININ;

EID: 77955653801     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2010.06.018     Document Type: Article
Times cited : (38)

References (56)
  • 1
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
    • Anisimova M., Gascuel O. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst. Biol. 2006, 55(4):539-552.
    • (2006) Syst. Biol. , vol.55 , Issue.4 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 7
    • 0030750055 scopus 로고    scopus 로고
    • Long term trends in the evolution of H(3) HA1 human influenza type A
    • Fitch W.M., Bush R.M., Bender C.A., Cox N.J. Long term trends in the evolution of H(3) HA1 human influenza type A. Proc. Natl. Acad. Sci. USA 1997, 94(15):7712-7718.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , Issue.15 , pp. 7712-7718
    • Fitch, W.M.1    Bush, R.M.2    Bender, C.A.3    Cox, N.J.4
  • 8
    • 67649995234 scopus 로고    scopus 로고
    • Evolution of the M gene of the influenza A virus in different host species: Large-scale sequence analysis
    • Furuse Y., Suzuki A., Kamigaki T., Oshitani H. Evolution of the M gene of the influenza A virus in different host species: Large-scale sequence analysis. Virol. J. 2009, 6(1):67.
    • (2009) Virol. J. , vol.6 , Issue.1 , pp. 67
    • Furuse, Y.1    Suzuki, A.2    Kamigaki, T.3    Oshitani, H.4
  • 9
    • 77951978031 scopus 로고    scopus 로고
    • Reassortment between swine influenza A viruses increased their adaptation to humans in pandemic H1N1/09
    • Furuse Y., Suzuki A., Oshitani H. Reassortment between swine influenza A viruses increased their adaptation to humans in pandemic H1N1/09. Infect. Genet. Evol. 2010.
    • (2010) Infect. Genet. Evol.
    • Furuse, Y.1    Suzuki, A.2    Oshitani, H.3
  • 10
    • 0033526523 scopus 로고    scopus 로고
    • Effects of egg-adaptation on the receptor-binding properties of human influenza A and B viruses
    • Gambaryan A.S., Robertson J.S., Matrosovich M.N. Effects of egg-adaptation on the receptor-binding properties of human influenza A and B viruses. Virology 1999, 258(2):232-239.
    • (1999) Virology , vol.258 , Issue.2 , pp. 232-239
    • Gambaryan, A.S.1    Robertson, J.S.2    Matrosovich, M.N.3
  • 13
    • 0019827545 scopus 로고
    • Antigenic structure of influenza virus haemagglutinin defined by hybridoma antibodies
    • Gerhard W., Yewdell J., Frankel M.E., Webster R. Antigenic structure of influenza virus haemagglutinin defined by hybridoma antibodies. Nature 1981, 290(5808):713-717.
    • (1981) Nature , vol.290 , Issue.5808 , pp. 713-717
    • Gerhard, W.1    Yewdell, J.2    Frankel, M.E.3    Webster, R.4
  • 18
    • 0035559445 scopus 로고    scopus 로고
    • Universal primer set for the full-length amplification of all influenza A viruses
    • Hoffmann E., Stech J., Guan Y., Webster R.G., Perez D.R. Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 2001, 146(12):2275-2289.
    • (2001) Arch. Virol. , vol.146 , Issue.12 , pp. 2275-2289
    • Hoffmann, E.1    Stech, J.2    Guan, Y.3    Webster, R.G.4    Perez, D.R.5
  • 19
    • 44649136618 scopus 로고    scopus 로고
    • Genetically destined potentials for N-linked glycosylation of influenza virus hemagglutinin
    • Igarashi M., Ito K., Kida H., Takada A. Genetically destined potentials for N-linked glycosylation of influenza virus hemagglutinin. Virology 2008, 376(2):323-329.
    • (2008) Virology , vol.376 , Issue.2 , pp. 323-329
    • Igarashi, M.1    Ito, K.2    Kida, H.3    Takada, A.4
  • 20
    • 77649176948 scopus 로고    scopus 로고
    • Predicting the antigenic structure of the pandemic (H1N1) 2009 influenza virus hemagglutinin
    • Igarashi M., Ito K., Yoshida R., Tomabechi D., Kida H., Takada A. Predicting the antigenic structure of the pandemic (H1N1) 2009 influenza virus hemagglutinin. PLoS ONE 2010, 5(1):e8553.
    • (2010) PLoS ONE , vol.5 , Issue.1
    • Igarashi, M.1    Ito, K.2    Yoshida, R.3    Tomabechi, D.4    Kida, H.5    Takada, A.6
  • 21
    • 77649311573 scopus 로고    scopus 로고
    • Full genomic amplification and subtyping of influenza A virus using a single set of universal primers
    • Inoue E., Wang X., Osawa Y., Okazaki K. Full genomic amplification and subtyping of influenza A virus using a single set of universal primers. Microbiol. Immunol. 2010, 54(3):129-134.
    • (2010) Microbiol. Immunol. , vol.54 , Issue.3 , pp. 129-134
    • Inoue, E.1    Wang, X.2    Osawa, Y.3    Okazaki, K.4
  • 25
    • 0036678093 scopus 로고    scopus 로고
    • The total influenza vaccine failure of 1947 revisited: major intrasubtypic antigenic change can explain failure of vaccine in a post-World War II epidemic
    • Kilbourne E.D., Smith C., Brett I., Pokorny B.A., Johansson B., Cox N. The total influenza vaccine failure of 1947 revisited: major intrasubtypic antigenic change can explain failure of vaccine in a post-World War II epidemic. Proc. Natl. Acad. Sci. U S A 2002, 99(16):10748-10752.
    • (2002) Proc. Natl. Acad. Sci. U S A , vol.99 , Issue.16 , pp. 10748-10752
    • Kilbourne, E.D.1    Smith, C.2    Brett, I.3    Pokorny, B.A.4    Johansson, B.5    Cox, N.6
  • 27
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after all: a comparison of methods for detecting amino acid sites under selection
    • Kosakovsky Pond S.L., Frost S.D.W. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol. 2005, 22(5):1208-1222.
    • (2005) Mol. Biol. Evol. , vol.22 , Issue.5 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2
  • 28
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
    • Kumar S., Nei M., Dudley J., Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 2008, 9(4):299-306.
    • (2008) Brief. Bioinform. , vol.9 , Issue.4 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 29
    • 0033856695 scopus 로고    scopus 로고
    • Early alterations of the receptor-binding properties of H1, H2, and H3 avian influenza virus hemagglutinins after their introduction into mammals
    • Matrosovich M., Tuzikov A., Bovin N., Gambaryan A., Klimov A., Castrucci M.R., Donatelli I., Kawaoka Y. Early alterations of the receptor-binding properties of H1, H2, and H3 avian influenza virus hemagglutinins after their introduction into mammals. J. Virol. 2000, 74(18):8502-8512.
    • (2000) J. Virol. , vol.74 , Issue.18 , pp. 8502-8512
    • Matrosovich, M.1    Tuzikov, A.2    Bovin, N.3    Gambaryan, A.4    Klimov, A.5    Castrucci, M.R.6    Donatelli, I.7    Kawaoka, Y.8
  • 30
    • 75849136881 scopus 로고    scopus 로고
    • Adaptive strategies of the influenza virus polymerase for replication in humans
    • Mehle A., Doudna J.A. Adaptive strategies of the influenza virus polymerase for replication in humans. Proc. Natl. Acad. Sci. U S A 2009, 106(50):21312-21316.
    • (2009) Proc. Natl. Acad. Sci. U S A , vol.106 , Issue.50 , pp. 21312-21316
    • Mehle, A.1    Doudna, J.A.2
  • 31
    • 0026175939 scopus 로고
    • Comparison of complete amino acid sequences and receptor-binding properties among 13 serotypes of hemagglutinins of influenza A viruses
    • Nobusawa E., Aoyama T., Kato H., Suzuki Y., Tateno Y., Nakajima K. Comparison of complete amino acid sequences and receptor-binding properties among 13 serotypes of hemagglutinins of influenza A viruses. Virology 1991, 182(2):475-485.
    • (1991) Virology , vol.182 , Issue.2 , pp. 475-485
    • Nobusawa, E.1    Aoyama, T.2    Kato, H.3    Suzuki, Y.4    Tateno, Y.5    Nakajima, K.6
  • 33
    • 77955653622 scopus 로고    scopus 로고
    • Estimating selection pressures on alignments of coding sequences
    • Pond, S. L. K., Poon, A. F. Y., and Frost, S. D. W. (2007). Estimating selection pressures on alignments of coding sequences. Analyses using HyPhy, Vol. 2008.
    • (2007) Analyses using HyPhy , vol.2008
    • Pond, S.L.K.1    Poon, A.F.Y.2    Frost, S.D.W.3
  • 34
    • 0022643215 scopus 로고
    • The antigenicity and evolution of influenza H1 haemagglutinin, from 1950-1957 and 1977-1983: two pathways from one gene
    • Raymond F.L., Caton A.J., Cox N.J., Kendal A.P., Brownlee G.G. The antigenicity and evolution of influenza H1 haemagglutinin, from 1950-1957 and 1977-1983: two pathways from one gene. Virology 1986, 148(2):275-287.
    • (1986) Virology , vol.148 , Issue.2 , pp. 275-287
    • Raymond, F.L.1    Caton, A.J.2    Cox, N.J.3    Kendal, A.P.4    Brownlee, G.G.5
  • 36
    • 0023261116 scopus 로고
    • Structural changes in the haemagglutinin which accompany egg adaptation of an influenza A(H1N1) virus
    • Robertson J.S., Bootman J.S., Newman R., Oxford J.S., Daniels R.S., Webster R.G., Schild G.C. Structural changes in the haemagglutinin which accompany egg adaptation of an influenza A(H1N1) virus. Virology 1987, 160(1):31-37.
    • (1987) Virology , vol.160 , Issue.1 , pp. 31-37
    • Robertson, J.S.1    Bootman, J.S.2    Newman, R.3    Oxford, J.S.4    Daniels, R.S.5    Webster, R.G.6    Schild, G.C.7
  • 37
    • 0020520729 scopus 로고
    • Receptor determinants of human and animal influenza virus isolates: differences in receptor specificity of the H3 hemagglutinin based on species of origin
    • Rogers G.N., Paulson J.C. Receptor determinants of human and animal influenza virus isolates: differences in receptor specificity of the H3 hemagglutinin based on species of origin. Virology 1983, 127(2):361-373.
    • (1983) Virology , vol.127 , Issue.2 , pp. 361-373
    • Rogers, G.N.1    Paulson, J.C.2
  • 38
    • 0030740376 scopus 로고    scopus 로고
    • Effects of glycosylation on the properties and functions of influenza virus hemagglutinin
    • Schulze I.T. Effects of glycosylation on the properties and functions of influenza virus hemagglutinin. J. Infect. Dis. 1997, 176(Suppl 1):S24-S28.
    • (1997) J. Infect. Dis. , vol.176 , Issue.SUPPL. 1
    • Schulze, I.T.1
  • 39
    • 70849132797 scopus 로고    scopus 로고
    • Evolutionary trends of A(H1N1) influenza virus hemagglutinin since 1918
    • Shen J., Ma J., Wang Q. Evolutionary trends of A(H1N1) influenza virus hemagglutinin since 1918. PLoS ONE 2009, 4(11):e7789.
    • (2009) PLoS ONE , vol.4 , Issue.11
    • Shen, J.1    Ma, J.2    Wang, Q.3
  • 40
    • 0033783032 scopus 로고    scopus 로고
    • Receptor binding and membrane fusion in virus entry: the influenza hemagglutinin
    • Skehel J.J., Wiley D.C. Receptor binding and membrane fusion in virus entry: the influenza hemagglutinin. Annu. Rev. Biochem. 2000, 69:531-569.
    • (2000) Annu. Rev. Biochem. , vol.69 , pp. 531-569
    • Skehel, J.J.1    Wiley, D.C.2
  • 42
    • 0033602713 scopus 로고    scopus 로고
    • Role of hemagglutinin cleavage for the pathogenicity of influenza virus
    • Steinhauer D.A. Role of hemagglutinin cleavage for the pathogenicity of influenza virus. Virology 1999, 258(1):1-20.
    • (1999) Virology , vol.258 , Issue.1 , pp. 1-20
    • Steinhauer, D.A.1
  • 43
    • 1642352884 scopus 로고    scopus 로고
    • Structure of the uncleaved human H1 hemagglutinin from the extinct 1918 influenza virus
    • Stevens J., Corper A.L., Basler C.F., Taubenberger J.K., Palese P., Wilson I.A. Structure of the uncleaved human H1 hemagglutinin from the extinct 1918 influenza virus. Science 2004, 303(5665):1866-1870.
    • (2004) Science , vol.303 , Issue.5665 , pp. 1866-1870
    • Stevens, J.1    Corper, A.L.2    Basler, C.F.3    Taubenberger, J.K.4    Palese, P.5    Wilson, I.A.6
  • 44
    • 29444433087 scopus 로고    scopus 로고
    • Glycan microarray analysis of the hemagglutinins from modern and pandemic influenza viruses reveals different receptor specificities
    • Stevens J., Blixt O., Glaser L., Taubenberger J.K., Palese P., Paulson J.C., Wilson I.A. Glycan microarray analysis of the hemagglutinins from modern and pandemic influenza viruses reveals different receptor specificities. J. Mol. Biol. 2006, 355(5):1143-1155.
    • (2006) J. Mol. Biol. , vol.355 , Issue.5 , pp. 1143-1155
    • Stevens, J.1    Blixt, O.2    Glaser, L.3    Taubenberger, J.K.4    Palese, P.5    Paulson, J.C.6    Wilson, I.A.7
  • 46
    • 33748789595 scopus 로고    scopus 로고
    • Natural selection on the influenza virus genome
    • Suzuki Y. Natural selection on the influenza virus genome. Mol. Biol. Evol. 2006, 23(10):1902-1911.
    • (2006) Mol. Biol. Evol. , vol.23 , Issue.10 , pp. 1902-1911
    • Suzuki, Y.1
  • 47
    • 55149123957 scopus 로고    scopus 로고
    • Positive selection operates continuously on hemagglutinin during evolution of H3N2 human influenza A virus
    • Suzuki Y. Positive selection operates continuously on hemagglutinin during evolution of H3N2 human influenza A virus. Gene 2008, 427(1-2):111-116.
    • (2008) Gene , vol.427 , Issue.1-2 , pp. 111-116
    • Suzuki, Y.1
  • 48
    • 0032849322 scopus 로고    scopus 로고
    • A method for detecting positive selection at single amino acid sites
    • Suzuki Y., Gojobori T. A method for detecting positive selection at single amino acid sites. Mol. Biol. Evol. 1999, 16(10):1315-1328.
    • (1999) Mol. Biol. Evol. , vol.16 , Issue.10 , pp. 1315-1328
    • Suzuki, Y.1    Gojobori, T.2
  • 54
    • 0027406275 scopus 로고
    • Genetic and antigenic analyses of influenza A (H1N1) viruses, 1986-1991
    • Xu X., Rocha E.P., Regenery H.L., Kendal A.P., Cox N.J. Genetic and antigenic analyses of influenza A (H1N1) viruses, 1986-1991. Virus Res. 1993, 28(1):37-55.
    • (1993) Virus Res. , vol.28 , Issue.1 , pp. 37-55
    • Xu, X.1    Rocha, E.P.2    Regenery, H.L.3    Kendal, A.P.4    Cox, N.J.5
  • 55
    • 84873403163 scopus 로고    scopus 로고
    • Structure and receptor binding properties of a pandemic H1N1 virus hemagglutinin
    • Yang H., Carney P., Stevens J. Structure and receptor binding properties of a pandemic H1N1 virus hemagglutinin. PLoS Curr. Influenza 2010, RRN1152.
    • (2010) PLoS Curr. Influenza
    • Yang, H.1    Carney, P.2    Stevens, J.3
  • 56
    • 67649979804 scopus 로고    scopus 로고
    • Structural and evolutionary characteristics of HA, NA, NS and M genes of clinical influenza A/H3N2 viruses passaged in human and canine cells
    • Zhirnov O.P., Vorobjeva I.V., Saphonova O.A., Poyarkov S.V., Ovcharenko A.V., Anhlan D., Malyshev N.A. Structural and evolutionary characteristics of HA, NA, NS and M genes of clinical influenza A/H3N2 viruses passaged in human and canine cells. J. Clin. Virol. 2009, 45(4):322-333.
    • (2009) J. Clin. Virol. , vol.45 , Issue.4 , pp. 322-333
    • Zhirnov, O.P.1    Vorobjeva, I.V.2    Saphonova, O.A.3    Poyarkov, S.V.4    Ovcharenko, A.V.5    Anhlan, D.6    Malyshev, N.A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.