Feminized tassels of maize mop1 and ts1 mutants exhibit altered levels of miR156 and specific SBP-box genes

Planta

Volumn 229, Issue 1, 2008, Pages 99-113

  Hultquist, Judd F ^a   Dorweiler, Jane E ^a  

^a Marquette University   (United States)

Author keywords

Inflorescence development; RT PCR; Sex determination; Sexual differentiation; Squamosa promoter binding protein; Tasselseed

Indexed keywords

MICRORNA; VEGETABLE PROTEIN;

ARTICLE; BIOLOGICAL MODEL; EXON; GENE EXPRESSION REGULATION; GENETICS; HISTOLOGY; HOMOZYGOTE; INTRON; MAIZE; METABOLISM; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT GENE; REGULATORY SEQUENCE; UPREGULATION;

BASE SEQUENCE; EXONS; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; HOMOZYGOTE; INTRONS; MICRORNAS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MUTATION; PHYLOGENY; PLANT PROTEINS; REGULATORY SEQUENCES, NUCLEIC ACID; UP-REGULATION; ZEA MAYS;

ZEA MAYS;

EID: 56649102198     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-008-0813-2     Document Type: Article

References (59)

1. AL Abbott E Alvarez-Saavedra EA Miska NC Lau DP Bartel HR Horvitz V Ambros 2005 The let-7 microRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans Dev Cell 9 403 414
2. M Alleman L Sidorenko K McGinnis V Seshadri JE Dorweiler J White K Sikkink VL Chandler 2006 An RNA-dependent RNA polymerase is required for paramutation in maize Nature 442 295 298
3. PW Becraft DK Bongard-Pierce AW Sylvester RS Poethig M Freeling 1990 The liguleless-1 gene acts tissue specifically in maize leaf development Dev Biol 141 220 232
4. RP Birkenbihl G Jach H Saedler P Huijser 2005 Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains J Mol Biol 352 585 596
5. A Calderon-Urrea SL Dellaporta 1999 Cell death and cell protection genes determine the fate of pistils in maize Development 126 435 441
6. GH Cardon S Hohmann K Nettesheim H Saedler P Huijser 1997 Functional analysis of the Arabidopsis thaliana SBP-box gene SPL3: a novel gene involved in the floral transition Plant J 12 367 377
7. G Cardon S Hohmann J Klein K Nettesheim H Saedler P Huijser 1999 Molecular characterisation of the Arabidopsis SBP-box genes Gene 237 91 104
8. PC Cheng RI Greyson DB Walden 1983 Organ initiation and the development of unisexual flowers in the tassel and ear of Zea mays Am J Bot 70 450 462
9. G Chuck AM Cigan K Saeteurn S Hake 2007 The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA Nat Genet 39 544 549
10. G Chuck R Meeley E Irish H Sakai S Hake 2007 The maize tasselseed4 microRNA controls sex determination and meristem cell fate by targeting Tasselseed6/indeterminate spikelet1 Nat Genet 39 1517 1521
11. A DeLong A Calderon-Urrea SL Dellaporta 1993 Sex determination gene TASSELSEED2 of maize encodes a short-chain alcohol dehydrogenase required for stage-specific floral organ abortion Cell 74 757 768
12. JE Dorweiler J Doebley 1997 Developmental analysis of teosinte glume architecure 1: a key locus in the evolution of maize (Poaceae) Am J Bot 84 1313 1322
13. JE Dorweiler A Stec JL Kermicle J Doebley 1993 Teosinte glume architecture-1: a genetic locus controlling a key step in maize evolution Science 262 233 235
14. JE Dorweiler CC Carey KM Kubo JB Hollick JL Kermicle VL Chandler 2000 Mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci Plant Cell 12 2101 2118
15. Eck RV, Dayhoff MO (1966) Atlas of protein sequence and structure, National Biomedical Research Foundation, Silver Springs
16. RC Edgar 2004 MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res 32 1792 1797
17. RA Emerson 1920 Heritable characters of maize. II. Pistillate flowered maize plants. J Hered 11 65 76
18. RA Emerson GW Beadle AC Fraser 1935 A summary of linkage studies in maize Cornell Univ Agric Exp Sta Mem 180 1 83
19. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791
20. M Gandikota RP Birkenbihl S Hohmann GH Cardon H Saedler P Huijser 2007 The miRNA156/157 recognition element in the 3′ UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings Plant J 49 683 693
21. BS Gaut JF Doebley 1997 DNA sequence evidence for the segmental allotetraploid origin of maize Proc Natl Acad Sci USA 94 6809 6814
22. RC Hardison 1996 A brief history of hemoglobins: plant, animal, protist, and bacteria Proc Natl Acad Sci USA 93 5675 5679
23. EE Irish JA Langdale TM Nelson 1994 Interactions between tassel seed genes and other sex determining genes in maize Dev Genet 15 155 171
24. DF Jones 1932 The interaction of specific genes determining sex in dioecious maize Proc Sixth Int Cong Genet 2 104 107
25. DF Jones 1934 Unisexual maize plants and their bearing on sex differentiation in other plants and in animals Genetics 19 552 567
26. J Klein H Saedler P Huijser 1996 A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA Mol Gen Genet 250 7 16
27. N Lauter A Kampani S Carlson M Goebel SP Moose 2005 MicroRNA172 down-regulates glossy15 to promote vegetative phase change in maize Proc Natl Acad Sci USA 102 9412 9417
28. RC Lee V Ambros 2001 An extensive class of small RNAs in Caenorhabditis elegans Science 294 862 864
29. K Manning M Tor M Poole Y Hong AJ Thompson GJ King JJ Giovannoni GB Seymour 2006 A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening Nat Genet 38 948 952
30. P McSteen D Laudencia-Chingcuanco J Colasanti 2000 A floret by any other name: control of meristem identity in maize TIPS 5 61 66
31. AA Millar PM Waterhouse 2005 Plant and animal microRNAs: similarities and differences Funct Integr Genomics 5 129 135
32. EA Miska E Alvarez-Saavedra AL Abbott NC Lau AB Hellman SM McGonagle DP Bartel VR Ambros HR Horvitz 2007 Most Caenorhabditis elegans microRNAs are individually not essential for development or viability PLoS Genet 3 e215
33. MA Moreno LC Harper RW Krueger SL Dellaporta M Freeling 1997 Liguleless1 encodes a nuclear-localized protein required for induction of ligules and auricles during maize leaf organogenesis Genes Dev 11 616 628
34. EG Moss 2007 Heterochronic genes and the nature of developmental time Curr Biol 17 R425 R434
35. Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York
36. Neuffer M, Coe EH Jr, Wessler SR (1997) Mutants of maize, Cold Spring Harbor Laboratory Press
37. NH Nickerson EE Dale 1955 Tassel modifications in Zea mays Ann Mo Bot Gard 42 195 212
38. PH Olsen V Ambros 1999 The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation Dev Biol 216 671 680
39. SM Paquette S Bak R Feyereisen 2000 Intron-exon organization and phylogeny in a large superfamily, the paralogous cytochrome P450 genes of Arabidopsis thaliana DNA Cell Biol 19 307 317
40. SE Parkinson SM Gross JB Hollick 2007 Maize sex determination and abaxial leaf fates are canalized by a factor that maintains repressed epigenetic states Dev Biol 308 462 473
41. SN Peirson JN Butler RG Foster 2003 Experimental validation of novel and conventional approaches to quantitative real-time PCR data analysis Nucleic Acids Res 31 e73
42. I Phipps 1928 Heritable characters in maize. XXXI. Tassel seed-4 J Hered 19 399 404
43. O Pontes CF Li PC Nunes J Haag T Ream A Vitins SE Jacobsen CS Pikaard 2006 The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center Cell 126 79 92
44. IB Rogozin YI Wolf AV Sorokin BG Mirkin EV Koonin 2003 Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution Curr Biol 13 1512 1517
45. M Ronemus MW Vaughn RA Martienssen 2006 MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis Plant Cell 18 1559 1574
46. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
47. S Schwarz AV Grande N Bujdoso H Saedler P Huijser 2008 The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis Plant Mol Biol 67 183 195
48. JM Stone X Liang ER Nekl JJ Stiers 2005 Arabidopsis AtSPL14, a plant-specific SBP-domain transcription factor, participates in plant development and sensitivity to fumonisin B1 Plant J 41 744 754
49. AW Sylvester WZ Cande M Freeling 1990 Division and differentiation during normal and liguleless-1 maize leaf development Development 110 985 1000
50. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
51. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
52. US Unte AM Sorensen P Pesaresi M Gandikota D Leister H Saedler P Huijser 2003 SPL8, an SBP-box gene that affects pollen sac development in Arabidopsis Plant Cell 15 1009 1019
53. H Wang T Nussbaum-Wagler B Li Q Zhao Y Vigouroux M Faller K Bomblies L Lukens JF Doebley 2005 The origin of the naked grains of maize Nature 436 714 719
54. AJ Wijeratne W Zhang Y Sun W Liu R Albert Z Zheng DG Oppenheimer D Zhao H Ma 2007 Differential gene expression in Arabidopsis wild-type and mutant anthers: insights into anther cell differentiation and regulatory networks Plant J 52 14 29
55. G Wu RS Poethig 2006 Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3 Development 133 3539 3547
56. K Xie C Wu L Xiong 2006 Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice Plant Physiol 142 280 293
57. Z Xie LK Johansen AM Gustafson KD Kasschau AD Lellis D Zilberman SE Jacobsen JC Carrington 2004 Genetic and functional diversification of small RNA pathways in plants PLoS Biol 2 E104
58. Z Yang X Wang S Gu Z Hu H Xu C Xu 2008 Comparative study of SBP-box gene family in Arabidopsis and rice Gene 407 1 11
59. Y Zhang S Schwarz H Saedler P Huijser 2007 SPL8, a local regulator in a subset of gibberellin-mediated developmental processes in Arabidopsis Plant Mol Biol 63 429 439