Hepatic gene expression in rainbow trout (Oncorhynchus mykiss) exposed to different hydrocarbon mixtures

Environmental Toxicology and Chemistry

Volumn 29, Issue 9, 2010, Pages 2034-2043

  Hook, Sharon E ^a   Lampi, Mark A ^b   Febbo, Eric J ^b   Ward, Jeff A ^a   Parkerton, Thomas F ^b  

^a BATTELLE MEMORIAL INSTITUTE   (United States)

^b EXXONMOBIL UPSTREAM RESEARCH COMPANY   (United States)

Author keywords

Cytochrome P4501A; Gene expression; Microarray; Petroleum; Rainbow trout

Indexed keywords

CYTOCHROME P4501A; EFFECTIVE TOOL; EXPOSURE MONITORING; GENE EXPRESSION PROFILES; GLUTATHIONE-S-TRANSFERASE; HEAVY FUEL-OIL; HYDROCARBON MIXTURE; MICROARRAY ANALYSIS; ONCORHYNCHUS MYKISS; PETROLEUM; PETROLEUM HYDROCARBONS; PRELIMINARY ANALYSIS; RAINBOW TROUT; REFINED OIL; REGULATED GENES; RNA EXTRACTION;

CLUSTERING ALGORITHMS; CRUDE OIL; DETOXIFICATION; FUEL OILS; GAS OILS; HEAVY WATER; HYDROCARBONS; PETROLEUM CHEMISTRY; PETROLEUM REFINING; RNA;

GENE EXPRESSION;

BIOLOGICAL MARKER; CYTOCHROME P450 1A; FUEL; GLUTATHIONE TRANSFERASE; HYDROCARBON; KEROSENE; PETROLEUM;

BIOMARKER; CRUDE OIL; CYTOCHROME; DETOXIFICATION; GENE EXPRESSION; JUVENILE; PETROLEUM HYDROCARBON; SALMONID; VEGETABLE OIL;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; EXPOSURE; GAS; GENE EXPRESSION; MICROARRAY ANALYSIS; NONHUMAN; PRIORITY JOURNAL; RAINBOW TROUT; RNA EXTRACTION;

ANIMALS; ARYL HYDROCARBON HYDROXYLASES; GENE EXPRESSION; GENE EXPRESSION PROFILING; LIVER; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ONCORHYNCHUS MYKISS; PETROLEUM; POLYCYCLIC HYDROCARBONS, AROMATIC; POLYMERASE CHAIN REACTION; RNA, MESSENGER; WATER POLLUTANTS, CHEMICAL;

ONCORHYNCHUS MYKISS;

EID: 77955558987     PISSN: 07307268     EISSN: 15528618     Source Type: Journal    
DOI: 10.1002/etc.245     Document Type: Article

References (42)

1. Forbes VE, Palmqvist A, Bach L. 2006. The use and misuse of biomarkers in ecotoxicology. Environ Toxicol Chem 25: 272-280.
2. Whyte JJ, Jung RE, Schmitt CJ, Tillitt DE. 2000. Ethoxyresorufin-O-deethylase (EROD) activity in fish as a biomarker of chemical exposure. Crit Rev Toxicol 30: 347-570.
3. Lee RF, Anderson JW. 2005. Significance of cytochrome P450 system responses and levels of bile fluorescent aromatic compounds in marine wildlife following oil spills. Mar Pollut Bull 50: 705-723.
4. Stegeman J, Hahn ME. 1994. Biochemistry and molecular biology of monooxygenases: Current perspectives on forms, function, and regulation of cytochrome P450 in aquatic species. In Malins D, Ostrander G, eds, Aquatic Toxicology: Molecular, Biochemical and Cellular Perspectives. CRC, Boca Raton, FL, USA, pp 87-174.
5. Willett KL, McDonald SJ, Steinberg MA, Beatty KB, Kennicutt MC, Safe SH. 1997. Biomarker sensitivity for polynuclear aromatic hydrocarbon contamination in two marine fish species collected in Galveston Bay, Texas. Environ Toxicol Chem 16: 1472-1479.
6. Hellou J, Leonard J, Collier TK, Ariese F. 2006. Assessing PAH exposure in feral finfish from the Northwest Atlantic. Mar Pollut Bull 52: 433-441.
7. Myers MS, Olson OP, Johnson LL, Stehr CS, Hom T, Varanasi U. 1992. Hepatic lesions other than neoplasms in subadult flatfish from Puget Sound, Washington - Relationships with indexes of contaminant exposure. Mar Environ Res 34: 45-51.
8. Myers MS, Anulacion BF, French BL, Reichert WL, Laetz CA, Buzitis J, Olson OP, Sol S, Collier TK. 2008. Improved flatfish health following remediation of a PAH-contaminated site in Eagle Harbor, Washington. Aquat Toxicol 88: 277-288.
9. McGrath JA, Parkerton TF, Di Toro DM. 2004. Application of the narcosis target lipid model to algal toxicity and deriving predicted-no-effect concentrations. Environ Toxicol Chem 23: 2503-2517.
10. McGrath J, Parkerton T, Hellweger F, Di Toro D. 2005. Validation of the narcosis target lipid model for petroleum products: Gasoline as a case study. Environ Toxicol Chem 24: 2382-2394.
11. Di Toro DM, McGrath JA, Stubblefield WA. 2007. Predicting the toxicity of neat and weathered crude oil: Toxic potential and the toxicity of saturated mixtures. Environ Toxicol Chem 26: 24-36.
12. Miracle AL, Toth GP, Lattier DL. 2003. The path from molecular indicators of exposure to describing dynamic biological systems in an aquatic organism: Microarrays and the fathead minnow. Ecotoxicology 12: 457-462.
13. Denslow ND, Kocerha J, Sepulveda MS, Gross T, Holm SE. 2004. Gene expression fingerprints of largemouth bass (Micropterus salmoides) exposed to pulp and paper mill effluents. Mutat Res Fundam Mol Mech Mutagen 552: 19-34.
14. Waters MD, Fostel JM. 2004. Toxicogenomics and systems toxicology: Aims and prospects. Nat Rev Genet 5: 936-948.
15. Benninghoff AD, Williams DE. 2008. Identification of a transcriptional fingerprint of estrogen exposure in rainbow trout liver. Toxicol Sci 101: 65-80.
16. Koskinen H, Pehkonen P, Vehniainen E, Krasnov A, Rexroad C, Afanasyev S, Molsa H, Oikari A. 2004. Response of rainbow trout transcriptome to model chemical contaminants. Biochem Biophys Res Commun 320: 745-753.
17. Hook SE, Skillman AD, Small JA, Schultz IR. 2006. Gene expression patterns in rainbow trout, Oncorhynchus mykiss, exposed to a suite of model toxicants. Aquat Toxicol 77: 372-385.
18. Roling JA, Bain LJ, Baldwin WS. 2004. Differential gene expression in mummichogs (Fundulus heteroclitus) following treatment with pyrene: comparison to a creosote contaminated site. Mar Environ Res 57: 377-395.
19. Roling JA, Bain LJ, Gardea-Torresdey J, Key PB, Baldwin WS. 2007. Using mummichog (Fundulus heteroclitus) arrays to monitor the effectiveness of remediation at a Superfund site in Charleston, South Carolina, USA. Environ Toxicol Chem 26: 1205-1213.
20. Hawthorne SB, Grabanski CB, Miller DJ, Kreitinger JP. 2005. Solid-phase microextraction measurement of parent and alkyl polycyclic aromatic hydrocarbons in milliliter sediment pore water samples and determination of K-DOC values. Environ Sci Technol 39: 2795-2803.
21. Redman A. 2009. PETROTOX Ver. 3.01 User's Guide, HydroQual, for Conservation of Clean Air and Water in Europe. CONCAWE. Brussels, Belgium.
22. Woods R, Letinski DJ, Febbo EJ, Dzamba C, Connelly M, Parkerton T. 2007. Assessing the aquatic hazard of commercial hydrocarbon resins. Ecotoxicol Environ Saf 66: 159-168.
23. Leslie H, Hermens J, Kraak M. 2004. Baseline toxicity of a chlorobenzene mixture and total body residues measured and estimated with solid-phase microextraction. Environ Toxicol Chem 23: 2017-2021.
24. Rise ML, von Schalburg KR, Brown GD, Mawer MA, Devlin RH, Kuipers N, Busby M, Beetz-Sargent M, Alberto R, Gibbs AR, Hunt P, Shukin R, Zeznik JA, Nelson C, Jones SRM, Smailus DE, Jones SJM, Schein JE, Marra MA, Butterfield YSN, Stott JM, Ng SHS, Davidson WS, Koop BF. 2004. Development and application of a salmonid EST database and cDNA microarray: Data mining and interspecific hybridization characteristics. Genome Res 14: 478-490.
25. Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FCP, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M. 2001. Minimum information about a microarray experiment (MIAME) - Toward standards for microarray data. Nat Genet 29: 365-371.
26. Draghici S. 2003. Data Analysis Tools for DNA Microarrays. Chapman & Hall, London, UK.
27. von Schalburg KR, Rise ML, Cooper GA, Brown GD, Gibbs AR, Nelson CC, Davidson WS, Koop BF. 2005. Fish and chips: Various methodologies demonstrate utility of a 16, 006-gene salmonid microarray. BMC Genomics 6.
28. Hook SE, Skillman AD, Gopalan B, Small JA, Schultz IR. 2008. Gene expression profiles in rainbow trout, Onchorhynchus mykiss, exposed to a simple chemical mixture. Toxicol Sci 102: 42-60.
29. Hook S, Lampi M, Febbo EJ, Ward J, Parkerton T. 2010. Temporal patterns in the transcriptomic response of rainbow trout, Oncorhynchus mykiss, to crude oil. Aquat Toxicol, DOI: 10.1016/j.aquatox.2010.05.011.
30. Liu Y, Verducci J, Schultz I, Hook S, Nagler J, Craciun G, Sundling K, Hayton W. 2009. Time course analysis of microarray data for the pathway of reproductive development in female rainbow trout. Stat Anal Data Mining 2: 192-208.
31. McGrath J, Di Toro D. 2009. Validation of the target lipid model for toxicity assessment of residual petroleum constituents: Monocyclic and polycyclic aromatic hydrocarbons. Environ Toxicol Chem 28: 1130-1148.
32. Nebert DW, Dalton TP. 2006. The role of cytochrome P450 enzymes in endogenous signalling pathways and environmental carcinogenesis. Nat Rev Cancer 6: 947-960.
33. Mitchelmore CL, Birmelin C, Chipman JK, Livingstone DR. 1998. Evidence for cytochrome P-450 catalysis and free radical involvement in the production of DNA strand breaks by benzo[a]pyrene and nitroaromatics in mussel (Mytilus edulis L.) digestive gland cells. Aquat Toxicol 41: 193-212.
34. Williams TD, Gensberg K, Minchin SD, Chipman JK. 2003. A DNA expression array to detect toxic stress response in European flounder (Platichthys flesus). Aquat Toxicol 65: 141-157.
35. Mos L, Cooper GA, Serben K, Cameron M, Koop BF. 2008. Effects of diesel on survival, growth, and gene expression in rainbow trout (Oncorhynchus mykiss) fry. Environ Sci Technol 42: 2656-2662.
36. Nakayama K, Kitamura SI, Murakami Y, Song JY, Jung SJ, Oh MJ, Iwata H, Tanabe S. 2008. Toxicogenomic analysis of immune system-related genes in Japanese flounder (Paralichthys olivaceus) exposed to heavy oil. Mar Pollut Bull 57: 445-452.
37. Lopez F, Rougemont J, Loriod B, Bourgeois A, Loi L, Bertucci F, Hingamp P, Houlgatte R, Granjeaud S. 2004. Feature extraction and signal processing for nylon DNA microarrays. BMC Genomics 5.
38. Arukwe A. 2006. Toxicological housekeeping genes: Do they really keep the house? Environ Sci Technol 40: 7944-7949.
39. van Delft JHM, van Agen E, van Breda SGJ, Herwijnen MH, Staal YCM, Kleinjans JCS. 2004. Discrimination of genotoxic from non-genotoxic carcinogens by gene expression profiling. Carcinogenesis 25: 1265-1276.
40. Steiner G, Suter L, Boess F, Gasser R, de Vera MC, Albertini S, Ruepp S. 2004. Discriminating different classes of toxicants by transcript profiling. Environ Health Perspect 112: 1236-1248.
41. Barrier A, Lemoine A, Boelle PY, Tse C, Brault D, Chiappini F, Breittschneider J, Lacaine F, Houry S, Huguier M, Van der Laan MJ, Speed T, Debuire B, Flahault A, Dudoit S. 2005. Colon cancer prognosis prediction by gene expression profiling. Oncogene 24: 6155-6164.
42. Gunnarsson L, Kristiansson E, Forlin L, Nerman O, Larsson DGJ. 2007. Sensitive and robust gene expression changes in fish exposed to estrogen - A microarray approach. BMC Genomics 8: 149.