Toxicogenomic analysis of immune system-related genes in Japanese flounder (Paralichthys olivaceus) exposed to heavy oil

Marine Pollution Bulletin

Volumn 57, Issue 6-12, 2008, Pages 445-452

  Nakayama, Kei ^a   Kitamura, Shin Ichi ^a   Murakami, Yasunori ^b   Song, Jun Young ^a   Jung, Sung Ju ^c   Oh, Myung Joo ^c   Iwata, Hisato ^a   Tanabe, Shinsuke ^a  

^a EHIME UNIVERSITY   (Japan)

^b EHIME UNIVERSITY   (Japan)

^c Chonnam National University   (South Korea)

Author keywords

Heavy oil; Immune system; Japanese flounder; Toxicogenomics

Indexed keywords

CONCENTRATION (PROCESS); CONTAMINATION; ENVIRONMENTAL IMPACT; FISH;

IMMUNE SYSTEM; JAPANESE FLOUNDER; TOXICOGENOMICS;

CRUDE PETROLEUM;

CD45 ANTIGEN; COLONY STIMULATING FACTOR 1; COMPLEMENTARY DNA; IMMUNOGLOBULIN LIGHT CHAIN; INTERLEUKIN 8; LYSOZYME; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; OIL; PROTEIN HSC71; PROTEIN NDRG1; REGULATOR PROTEIN; RNA; SEA WATER;

BIOACCUMULATION; BIOMARKER; CONCENTRATION (COMPOSITION); FLATFISH; GENE EXPRESSION; GENETIC ANALYSIS; IMMUNE RESPONSE; IMMUNE SYSTEM; OIL POLLUTION; PAH; POLLUTION EXPOSURE;

ACCLIMATIZATION; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BODY WEIGHT; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DNA MICROARRAY; DOWN REGULATION; EXPOSURE; FLOUNDER; GENE EXPRESSION; GENE LIBRARY; GENE MUTATION; GENETIC ANALYSIS; IMMUNE SYSTEM; JAPAN; KIDNEY PARENCHYMA; NONHUMAN; PARALICHTHYS OLIVACEUS; RNA EXTRACTION; TOXICOGENETICS; UPREGULATION;

ANIMALS; FLOUNDER; GENE EXPRESSION REGULATION; IMMUNE SYSTEM; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PETROLEUM; TOXICOGENETICS; WATER POLLUTANTS, CHEMICAL;

BACTERIA (MICROORGANISMS); PARALICHTHYS OLIVACEUS; PLEURONECTOIDEI;

EID: 45049084811     PISSN: 0025326X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.marpolbul.2008.02.021     Document Type: Article

References (28)

1. Aas E., Baussant T., Balk L., Liewenborg B., and Andersen O.K. PAH metabolites in bile, cytochrome P4501A and DNA adducts as environmental risk parameters for chronic oil exposure: a laboratory experiment with Atlantic cod. Aquatic Toxicology 51 (2000) 241-258
2. Bae D.S., Hanneman W.H., Yang R.S., and Campain J.A. Characterization of gene expression changes associated with MNNG, arsenic, or metal mixture treatment in human keratinocytes: application of cDNA microarray technology. Environmental Health Perspectives 110 Suppl. 6 (2002) 931-941
3. Chen L., He C., Baoprasertkul P., Xu P., Li P., Serapion J., Waldbieser G., Wolters W., and Liu Z. Analysis of a catfish gene resembling interleukin-8: cDNA cloning, gene structure, and expression after infection with Edwardsiella ictaluri. Developmental and Comparative Immunology 29 (2005) 135-142
4. Conesa A., Götz S., García-Gómez J.M., Terol J., Talón M., and Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21 (2005) 3674-3676
5. Davoodi F., and Claireaux G. Effects of exposure to petroleum hydrocarbons upon the metabolism of the common sole Solea solea. Marine Pollution Bulletin 54 (2007) 928-934
6. Denslow N.D., Garcia-Reyero N., and Barber D.S. Fish 'n′ chips: the use of microarrays for aquatic toxicology. Molecular Biosystems 3 (2007) 172-177
7. Dondero F., Piacentini L., Marsano F., Rebelo M., Vergani L., Venier P., and Viarengo A. Gene transcription profiling in pollutant exposed mussels (Mytilus spp.) using a new low-density oligonucleotide microarray. Gene 376 (2006) 24-36
8. Handley-Goldstone H.M., Grow M.W., and Stegeman J.J. Cardiovascular gene expression profiles of dioxin exposure in zebrafish embryos. Toxicological Sciences 85 (2005) 683-693
9. Hanington P.C., Barreda D.R., and Belosevic M. A novel hematopoietic granulin induces proliferation of goldfish (Carassius auratus L.) macrophages. Journal of Biological Chemistry 281 (2006) 9963-9970
10. Hayakawa K., Nomura M., Nakagawa T., Oguri S., Kawanishi T., Toriba A., Kizu R., Sakaguchi T., and Tamiya E. Damage to and recovery of coastlines polluted with C-heavy oil spilled from the Nakhodka. Water Research 40 (2006) 981-989
11. Hook S.E., Skillman A.D., Small J.A., and Schultz I.R. Gene expression patterns in rainbow trout, Oncorhynchus mykiss, exposed to a suite of model toxicants. Aquatic Toxicology 77 (2006) 372-385
12. Khan R.A. Health of flatfish from localities in Placentia Bay, Newfoundland, contaminated with petroleum and PCBs. Archives of Environmental Contamination and Toxicology 44 (2003) 485-492
13. Kishi K., Kitagawa E., Onikura N., Nakamura A., and Iwahashi H. Expression analysis of sex-specific and 17beta-estradiol-responsive genes in the Japanese medaka, Oryzias latipes, using oligonucleotide microarrays. Genomics 88 (2006) 241-251
14. Knaapen A.M., Schins R.P.F., Polat D., Becker A., and Borm P.J.A. Mechanisms of neutrophil-induced DNA damage in respiratory tract epithelial cells. Molecular and Cellular Biochemistry 234/235 (2002) 143-151
15. Krasnov A., Koskinen H., Rexroad C., Afanasyev S., Mölsä H., and Oikari A. Transcriptome responses to carbon tetrachloride and pyrene in the kidney and liver of juvenile rainbow trout (Oncorhynchus mykiss). Aquatic Toxicology 74 (2005) 70-81
16. Kurobe T., Yasuike M., Kimura T., Hirono I., and Aoki T. Expression profiling of immune-related genes from Japanese flounder Paralichthys olivaceus kidney cells using cDNA microarrays. Developmental and Comparative Immunology 29 (2005) 515-523
17. Nagase H. Activation mechanisms of matrix metalloproteinases. Biological Chemistry 378 (1997) 151-160
18. Noya M., Qian Y., and Ainsworth A.J. Molecular and functional characterization of channel catfish (Ictalurus punctatus) neutrophil collagenase. Veterinary Immunology and Immunopathology 67 (1999) 303-316
19. Oshima Y., Koyama J., Nakayama K., Inoue Y., Shimasaki Y., Inoue S., and Honjo T. Use of hepatic CYP1A1 activity in Japanese flounder to monitor oil dispersed from the Nakhodka spill. Japanese Journal of Environmental Toxicology 7 (2004) 123-129
20. Reynaud S., and Deschaux P. The effects of polycyclic aromatic hydrocarbons on the immune system of fish: a review. Aquatic Toxicology 77 (2006) 229-238
21. Saeed A.I., Sharov V., White J., Li J., Liang W., Bhagabati N., Braisted J., Klapa M., Currier T., Thiagarajan M., Sturn A., Snuffin M., Rezantsev A., Popov D., Ryltsov A., Kostukovich E., Borisovsky I., Liu Z., Vinsavich A., Trush V., and Quackenbush J. TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34 (2003) 374-378
22. Salnikow K., Blagosklonny M.V., Ryan H., Johnson R., and Costa M. Carcinogenic nickel induces genes involved with hypoxic stress. Cancer Research 60 (2000) 38-41
23. Shimasaki Y., Kitano T., Oshima Y., Inoue S., Imada N., and Honjo T. Tributyltin causes masculinization in fish. Environmental Toxicology and Chemistry 22 (2003) 141-144
24. Song J.Y., Nakayama K., Murakami Y., Jung S.J., Oh M.J., Matsuoka S., Kawakami H., and Kitamura S.I. Does heavy oil pollution induce bacterial diseases in Japanese flounder Paralichthys olivaceus?. Marine Pollution Bulletin 57 (2008) 889-894
25. Stagg R.M., Robinson C., McIntosh A.M., Moffat C.F., and Bruno D.W. The effects of the 'Braer′ oil spill, Shetland Isles, Scotland, on P4501A in farmed Atlantic salmon (Salmo salar) and the common dab (Limanda limanda). Marine Environmental Research 46 (1998) 301-306
26. Stagg R.M. The development of an international programme for monitoring the biological effects of contaminants in the OSPAR convention area. Marine Environmental Research 46 (1998) 307-313
27. Williams T.D., Diab A.M., George S.G., Godfrey R.E., Sabine V., Conesa A., Minchin S.D., Watts P.C., and Chipman J.K. Development of the GENIPOL European flounder (Platichthys flesus) microarray and determination of temporal transcriptional responses to cadmium at low dose. Environmental Science and Technology 40 (2006) 6479-6488
28. 2+ compounds. Cancer Research 58 (1998) 2182-2189