-
1
-
-
33751219922
-
Role of DREB transcription factors in abiotic and biotic stress tolerance in plants
-
Agarwal PK, Agarwal P, Reddy MK, Sopory SK (2006) Role of DREB transcription factors in abiotic and biotic stress tolerance in plants. Plant Cell Rep 25: 1263-1274.
-
(2006)
Plant Cell Rep
, vol.25
, pp. 1263-1274
-
-
Agarwal, P.K.1
Agarwal, P.2
Reddy, M.K.3
Sopory, S.K.4
-
2
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen E, Xie ZX, Gustafson AM, Sung GH, Spatafora JW, Carrington JC (2004) Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 36: 1282-1290.
-
(2004)
Nat Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.X.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0242437931
-
Discrete mutations in the presequence of potato formate dehydrogenase inhibit the in vivo targeting of GFP fusions into mitochondria
-
Ambard-Bretteville F, Small I, Grandjean O, Colas des Francs-Small C (2003a) Discrete mutations in the presequence of potato formate dehydrogenase inhibit the in vivo targeting of GFP fusions into mitochondria. Biochem Biophys Res Commun 311: 966-971.
-
(2003)
Biochem Biophys Res Commun
, vol.311
, pp. 966-971
-
-
Ambard-Bretteville, F.1
Small, I.2
Grandjean, O.3
Colas des Francs-Small, C.4
-
5
-
-
0345149437
-
Repression of formate dehydrogenase in Solanum tuberosum increases steady-state levels of formate and accelerates the accumulation of proline in response to osmotic stress
-
Ambard-Bretteville F, Sorin C, Rebeille F, Hourton-Cabassa C, Colas des Francs-Small C (2003b) Repression of formate dehydrogenase in Solanum tuberosum increases steady-state levels of formate and accelerates the accumulation of proline in response to osmotic stress. Plant Mol Biol 52: 1153-1168.
-
(2003)
Plant Mol Biol
, vol.52
, pp. 1153-1168
-
-
Ambard-Bretteville, F.1
Sorin, C.2
Rebeille, F.3
Hourton-Cabassa, C.4
Colas des Francs-Small, C.5
-
6
-
-
9144257886
-
The Pfam protein families database
-
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer ELL, Studholme DJ, Yeats C, Eddy SR (2004) The Pfam protein families database. Nucleic Acids Res 32: D138-D141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.L.10
Studholme, D.J.11
Yeats, C.12
Eddy, S.R.13
-
7
-
-
3042762926
-
Plant disease resistance protein signaling: NBS-LRR proteins and their partners
-
Belkhadir Y, Subramaniam R, Dangl JL (2004) Plant disease resistance protein signaling: NBS-LRR proteins and their partners. Curr Opin Plant Biol 7: 391-399.
-
(2004)
Curr Opin Plant Biol
, vol.7
, pp. 391-399
-
-
Belkhadir, Y.1
Subramaniam, R.2
Dangl, J.L.3
-
8
-
-
0030585734
-
Evaluation of gene structure prediction programs
-
Burset M, Guigo R (1996) Evaluation of gene structure prediction programs. Genomics 34: 353-367.
-
(1996)
Genomics
, vol.34
, pp. 353-367
-
-
Burset, M.1
Guigo, R.2
-
9
-
-
0038506859
-
Phosphorylation of formate dehydrogenase in potato tuber mitochondria
-
Bykova NV, Stensballe A, Egsgaard H, Jensen ON, Moller IM (2003) Phosphorylation of formate dehydrogenase in potato tuber mitochondria. J Biol Chem 278: 26021-26030.
-
(2003)
J Biol Chem
, vol.278
, pp. 26021-26030
-
-
Bykova, N.V.1
Stensballe, A.2
Egsgaard, H.3
Jensen, O.N.4
Moller, I.M.5
-
10
-
-
33749532842
-
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes
-
Cannon SB, Sterck L, Rombauts S, Sato S, Cheung F, Gouzy J, Wang XH, Mudge J, Vasdewani J, Scheix T, Spannagl M, Monaghan E, Nicholson C, Humphray SJ, Schoof H, Mayer KFX, Rogers J, Quetier F, Oldroyd GE, Debelle F, Cook DR, Retzel EF, Roe BA, Town CD, Tabata S, van de Peer Y, Young ND (2006) Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc Natl Acad Sci USA 103: 14959-14964.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 14959-14964
-
-
Cannon, S.B.1
Sterck, L.2
Rombauts, S.3
Sato, S.4
Cheung, F.5
Gouzy, J.6
Wang, X.H.7
Mudge, J.8
Vasdewani, J.9
Scheix, T.10
Spannagl, M.11
Monaghan, E.12
Nicholson, C.13
Humphray, S.J.14
Schoof, H.15
Mayer, K.F.X.16
Rogers, J.17
Quetier, F.18
Oldroyd, G.E.19
Debelle, F.20
Cook, D.R.21
Retzel, E.F.22
Roe, B.A.23
Town, C.D.24
Tabata, S.25
van de Peer, Y.26
Young, N.D.27
more..
-
11
-
-
33747835855
-
Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress
-
Cao YF, Song FM, Goodman RM, Zheng Z (2006) Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress. J Plant Physiol 163: 1167-1178.
-
(2006)
J Plant Physiol
, vol.163
, pp. 1167-1178
-
-
Cao, Y.F.1
Song, F.M.2
Goodman, R.M.3
Zheng, Z.4
-
12
-
-
2542607672
-
Drought tolerance established by enhanced expression of the CC-NBS-LRR gene, ADR1, requires salicylic acid, EDS1 and ABI1
-
Chini A, Grant JJ, Seki M, Shinozaki K, Loake GJ (2004) Drought tolerance established by enhanced expression of the CC-NBS-LRR gene, ADR1, requires salicylic acid, EDS1 and ABI1. Plant J 38: 810-822.
-
(2004)
Plant J
, vol.38
, pp. 810-822
-
-
Chini, A.1
Grant, J.J.2
Seki, M.3
Shinozaki, K.4
Loake, G.J.5
-
13
-
-
32944479048
-
Host-microbe interactions: Shaping the evolution of the plant immune response
-
Chisholm ST, Coaker G, Day B, Staskawicz BJ (2006) Host-microbe interactions: Shaping the evolution of the plant immune response. Cell 124: 803-814.
-
(2006)
Cell
, vol.124
, pp. 803-814
-
-
Chisholm, S.T.1
Coaker, G.2
Day, B.3
Staskawicz, B.J.4
-
14
-
-
0029915525
-
Computational method to predict mitochondrially imported proteins and their targeting sequences
-
Claros MG, Vincens P (1996) Computational method to predict mitochondrially imported proteins and their targeting sequences. Eur J Biochem 241: 779-786.
-
(1996)
Eur J Biochem
, vol.241
, pp. 779-786
-
-
Claros, M.G.1
Vincens, P.2
-
15
-
-
0027639902
-
Identification of a major soluble-protein in mitochondria from nonphotosynthetic tissues as NAD-dependent formate dehydrogenase
-
Colas des Francs-Small C, Ambard-Bretteville F, Small ID, Remy R (1993) Identification of a major soluble-protein in mitochondria from nonphotosynthetic tissues as NAD-dependent formate dehydrogenase. Plant Physiol 102: 1171-1177.
-
(1993)
Plant Physiol
, vol.102
, pp. 1171-1177
-
-
Colas des Francs-Small, C.1
Ambard-Bretteville, F.2
Small, I.D.3
Remy, R.4
-
16
-
-
33344462964
-
Legume comparative genomics: progress in phylogenetics and phylogenomics
-
Cronk Q, Ojeda I, Pennington RT (2006) Legume comparative genomics: progress in phylogenetics and phylogenomics. Curr Opin Plant Biol 9: 99-103.
-
(2006)
Curr Opin Plant Biol
, vol.9
, pp. 99-103
-
-
Cronk, Q.1
Ojeda, I.2
Pennington, R.T.3
-
17
-
-
4444320185
-
Characterization of the complex locus of bean encoding polygalacturonase-inhibiting proteins reveals subfunctionalization for defense against fungi and insects
-
D'Ovidio R, Raiola A, Capodicasa C, Devoto A, Pontiggia D, Roberti S, Galletti R, Conti E, O'Sullivan D, De Lorenzo G (2004) Characterization of the complex locus of bean encoding polygalacturonase-inhibiting proteins reveals subfunctionalization for defense against fungi and insects. Plant Physiol 135: 2424-2435.
-
(2004)
Plant Physiol
, vol.135
, pp. 2424-2435
-
-
D'Ovidio, R.1
Raiola, A.2
Capodicasa, C.3
Devoto, A.4
Pontiggia, D.5
Roberti, S.6
Galletti, R.7
Conti, E.8
O'Sullivan, D.9
de Lorenzo, G.10
-
18
-
-
0035859020
-
Plant pathogens and integrated defence responses to infection
-
Dangl JL, Jones JDG (2001) Plant pathogens and integrated defence responses to infection. Nature 411: 826-833.
-
(2001)
Nature
, vol.411
, pp. 826-833
-
-
Dangl, J.L.1
Jones, J.D.G.2
-
19
-
-
56349111797
-
BAC end sequences corresponding to the B4 resistance gene cluster in common bean: a resource for markers and synteny analyses
-
David P, Sévignac M, Thareau V, Catillon Y, Kami J, Gepts P, Langin T, Geffroy V (2008) BAC end sequences corresponding to the B4 resistance gene cluster in common bean: a resource for markers and synteny analyses. Mol Genet Genomics 280: 521-533.
-
(2008)
Mol Genet Genomics
, vol.280
, pp. 521-533
-
-
David, P.1
Sévignac, M.2
Thareau, V.3
Catillon, Y.4
Kami, J.5
Gepts, P.6
Langin, T.7
Geffroy, V.8
-
20
-
-
77955843873
-
The distribution of formic and alcohol dehydrogenases in the higher plants, with particular reference to their variation in the pea plant during its life cycle
-
Davison D (1949) The distribution of formic and alcohol dehydrogenases in the higher plants, with particular reference to their variation in the pea plant during its life cycle. Proc Linn Soc NSW 74: 26-36.
-
(1949)
Proc Linn Soc NSW
, vol.74
, pp. 26-36
-
-
Davison, D.1
-
21
-
-
33745219441
-
Type III effector proteins: doppelgangers of bacterial virulence
-
Desveaux D, Singer AU, Dangl JL (2006) Type III effector proteins: doppelgangers of bacterial virulence. Curr Opin Plant Biol 9: 376-382.
-
(2006)
Curr Opin Plant Biol
, vol.9
, pp. 376-382
-
-
Desveaux, D.1
Singer, A.U.2
Dangl, J.L.3
-
23
-
-
0037356824
-
The rest of the iceberg. Legume diversity and evolution in a phylogenetic context
-
Doyle JJ, Luckow MA (2003) The rest of the iceberg. Legume diversity and evolution in a phylogenetic context. Plant Physiol 131: 900-910.
-
(2003)
Plant Physiol
, vol.131
, pp. 900-910
-
-
Doyle, J.J.1
Luckow, M.A.2
-
24
-
-
0033784961
-
A GAL4-like protein is involved in the switch between biotrophic and necrotrophic phases of the infection process of Colletotrichum lindemuthianum on common bean
-
Dufresne M, Perfect S, Pellier AL, Bailey JA, Langin I (2000) A GAL4-like protein is involved in the switch between biotrophic and necrotrophic phases of the infection process of Colletotrichum lindemuthianum on common bean. Plant Cell 12: 1579-1589.
-
(2000)
Plant Cell
, vol.12
, pp. 1579-1589
-
-
Dufresne, M.1
Perfect, S.2
Pellier, A.L.3
Bailey, J.A.4
Langin, I.5
-
25
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2: 953-971.
-
(2007)
Nat Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
26
-
-
0000860352
-
Isolation, purification and partial characterization of formate dehydrogenase from soybean seed
-
Farinelli MP, Fry DW, Richardson KE (1983) Isolation, purification and partial characterization of formate dehydrogenase from soybean seed. Plant Physiol 73: 858-859.
-
(1983)
Plant Physiol
, vol.73
, pp. 858-859
-
-
Farinelli, M.P.1
Fry, D.W.2
Richardson, K.E.3
-
27
-
-
0037268956
-
Characterization of expressed NBS-LRR resistance gene candidates from common bean
-
Ferrier Cana E, Geffroy V, Macadre C, Creusot F, Imbert Bollore P, Sevignac M, Langin T (2003) Characterization of expressed NBS-LRR resistance gene candidates from common bean. Theor Appl Genet 106: 251-261.
-
(2003)
Theor Appl Genet
, vol.106
, pp. 251-261
-
-
Ferrier Cana, E.1
Geffroy, V.2
Macadre, C.3
Creusot, F.4
Imbert Bollore, P.5
Sevignac, M.6
Langin, T.7
-
28
-
-
17444419760
-
Distinct post-transcriptional modifications result into seven alternative transcripts of the CC-NBS-LRR gene JA1tr of Phaseolus vulgaris
-
Ferrier Cana E, Macadre C, Sevignac M, David P, Langin T, Geffroy V (2005) Distinct post-transcriptional modifications result into seven alternative transcripts of the CC-NBS-LRR gene JA1tr of Phaseolus vulgaris. Theor Appl Genet 110: 895-905.
-
(2005)
Theor Appl Genet
, vol.110
, pp. 895-905
-
-
Ferrier Cana, E.1
Macadre, C.2
Sevignac, M.3
David, P.4
Langin, T.5
Geffroy, V.6
-
29
-
-
0000295229
-
Host-parasite interaction in flax rust. Its genetics and other implications
-
Flor HH (1955) Host-parasite interaction in flax rust. Its genetics and other implications. Phytopathol 45: 680-685.
-
(1955)
Phytopathol
, vol.45
, pp. 680-685
-
-
Flor, H.H.1
-
30
-
-
0031732094
-
A computer program for aligning a cDNA sequence with a genomic DNA sequence
-
Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W (1998) A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res 8: 967-974.
-
(1998)
Genome Res
, vol.8
, pp. 967-974
-
-
Florea, L.1
Hartzell, G.2
Zhang, Z.3
Rubin, G.M.4
Miller, W.5
-
31
-
-
1042279117
-
In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: New proteins, new functions, and a plastid proteome database
-
Friso G, Giacomelli L, Ytterberg AJ, Peltier JB, Rudella A, Sun Q, van Wijk KJ (2004) In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: New proteins, new functions, and a plastid proteome database. Plant Cell 16: 478-499.
-
(2004)
Plant Cell
, vol.16
, pp. 478-499
-
-
Friso, G.1
Giacomelli, L.2
Ytterberg, A.J.3
Peltier, J.B.4
Rudella, A.5
Sun, Q.6
van Wijk, K.J.7
-
32
-
-
33745210764
-
Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks
-
Fujita M, Fujita Y, Noutoshi Y, Takahashi F, Narusaka Y, Yamaguchi-Shinozaki K, Shinozaki K (2006) Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks. Curr Opin Plant Biol 9: 436-442.
-
(2006)
Curr Opin Plant Biol
, vol.9
, pp. 436-442
-
-
Fujita, M.1
Fujita, Y.2
Noutoshi, Y.3
Takahashi, F.4
Narusaka, Y.5
Yamaguchi-Shinozaki, K.6
Shinozaki, K.7
-
33
-
-
0033198092
-
Identification of an ancestral resistance gene cluster involved in the coevolution process between Phaseolus vulgaris and its fungal pathogen Colletotrichum lindemuthianum
-
Geffroy V, Sicard D, de Oliveira JCF, Sevignac M, Cohen S, Gepts P, Neema C, Langin T, Dron M (1999) Identification of an ancestral resistance gene cluster involved in the coevolution process between Phaseolus vulgaris and its fungal pathogen Colletotrichum lindemuthianum. Mol Plant Microbe Interact 12: 774-784.
-
(1999)
Mol Plant Microbe Interact
, vol.12
, pp. 774-784
-
-
Geffroy, V.1
Sicard, D.2
de Oliveira, J.C.F.3
Sevignac, M.4
Cohen, S.5
Gepts, P.6
Neema, C.7
Langin, T.8
Dron, M.9
-
34
-
-
0343593687
-
Inheritance of partial resistance against Colletotrichum lindemuthianum in Phaseolus vulgaris and co-localization of quantitative trait loci with genes involved in specific resistance
-
Geffroy V, Sevignac M, De Oliveira JCF, Fouilloux G, Skroch P, Thoquet P, Gepts P, Langin T, Dron M (2000) Inheritance of partial resistance against Colletotrichum lindemuthianum in Phaseolus vulgaris and co-localization of quantitative trait loci with genes involved in specific resistance. Mol Plant Microbe Interact 13: 287-296.
-
(2000)
Mol Plant Microbe Interact
, vol.13
, pp. 287-296
-
-
Geffroy, V.1
Sevignac, M.2
de Oliveira, J.C.F.3
Fouilloux, G.4
Skroch, P.5
Thoquet, P.6
Gepts, P.7
Langin, T.8
Dron, M.9
-
35
-
-
38349190255
-
Resistance to Colletotrichum lindemuthianum in Phaseolus vulgaris: a case study for mapping two independent genes
-
Geffroy V, Sevignac M, Billant P, Dron M, Langin T (2008) Resistance to Colletotrichum lindemuthianum in Phaseolus vulgaris: a case study for mapping two independent genes. Theor Appl Genet 116: 407-415.
-
(2008)
Theor Appl Genet
, vol.116
, pp. 407-415
-
-
Geffroy, V.1
Sevignac, M.2
Billant, P.3
Dron, M.4
Langin, T.5
-
36
-
-
62449248419
-
-
Geffroy V, Macadre C, David P, Pedrosa-Harand A, Sevignac M, Dauga C, Langin T (2009) Molecular analysis of a large subtelomeric NBS-LRR family in two representative genotypes of the major gene pools of Phaseolus vulgaris. Genetics 181: 405-419.
-
-
-
-
37
-
-
0043269273
-
Targeted activation tagging of the Arabidopsis NBS-LRR gene, ADR1, conveys resistance to virulent pathogens
-
Grant JJ, Chini A, Basu D, Loake GJ (2003) Targeted activation tagging of the Arabidopsis NBS-LRR gene, ADR1, conveys resistance to virulent pathogens. Mol Plant Microbe Interact 16: 669-680.
-
(2003)
Mol Plant Microbe Interact
, vol.16
, pp. 669-680
-
-
Grant, J.J.1
Chini, A.2
Basu, D.3
Loake, G.J.4
-
38
-
-
33750097480
-
Subterfuge and manipulation: Type III effector proteins of phytopathogenic bacteria
-
Grant SR, Fisher EJ, Chang JH, Mole BM, Dangl JL (2006) Subterfuge and manipulation: Type III effector proteins of phytopathogenic bacteria. Annu Rev Microbiol 60: 425-449.
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 425-449
-
-
Grant, S.R.1
Fisher, E.J.2
Chang, J.H.3
Mole, B.M.4
Dangl, J.L.5
-
39
-
-
0030266346
-
Resistance gene-dependent plant defense responses
-
Hammond-Kosack KE, Jones JDG (1996) Resistance gene-dependent plant defense responses. Plant Cell 8: 1773-1791.
-
(1996)
Plant Cell
, vol.8
, pp. 1773-1791
-
-
Hammond-Kosack, K.E.1
Jones, J.D.G.2
-
40
-
-
0038404717
-
Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding
-
Hammond-Kosack KE, Parker JE (2003) Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding. Curr Opin Biotechnol 14: 177-193.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 177-193
-
-
Hammond-Kosack, K.E.1
Parker, J.E.2
-
42
-
-
33846085927
-
SUBA: the Arabidopsis subcellular database
-
Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I, Millar AH (2007) SUBA: the Arabidopsis subcellular database. Nucleic Acids Res 35: D213-D218.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 213-218
-
-
Heazlewood, J.L.1
Verboom, R.E.2
Tonti-Filippini, J.3
Small, I.4
Millar, A.H.5
-
43
-
-
0036891980
-
Formate dehydrogenase in Arabidopsis thaliana: overexpression and subcellular localization in leaves
-
Herman PL, Ramberg H, Baack RD, Markwell J, Osterman JC (2002) Formate dehydrogenase in Arabidopsis thaliana: overexpression and subcellular localization in leaves. Plant Sci 163: 1137-1145.
-
(2002)
Plant Sci
, vol.163
, pp. 1137-1145
-
-
Herman, P.L.1
Ramberg, H.2
Baack, R.D.3
Markwell, J.4
Osterman, J.C.5
-
44
-
-
0000035111
-
Stress induction of mitochondrial formate dehydrogenase in potato leaves
-
Hourton-Cabassa C, Ambard-Bretteville F, Moreau F, de Virville JD, Remy R, Colas des Francs-Small C (1998) Stress induction of mitochondrial formate dehydrogenase in potato leaves. Plant Physiol 116: 627-635.
-
(1998)
Plant Physiol
, vol.116
, pp. 627-635
-
-
Hourton-Cabassa, C.1
Ambard-Bretteville, F.2
Moreau, F.3
de Virville, J.D.4
Remy, R.5
Colas des Francs-Small, C.6
-
45
-
-
0032849859
-
CAP3: a DNA sequence assembly program
-
Huang XQ, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9: 868-877.
-
(1999)
Genome Res
, vol.9
, pp. 868-877
-
-
Huang, X.Q.1
Madan, A.2
-
46
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
47
-
-
0022427808
-
The 1st 12 amino-acids of a yeast mitochondrial outer-membrane protein can direct a nuclear-encoded cytochrome-oxidase subunit to the mitochondrial inner membrane
-
Hurt EC, Muller U, Schatz G (1985) The 1st 12 amino-acids of a yeast mitochondrial outer-membrane protein can direct a nuclear-encoded cytochrome-oxidase subunit to the mitochondrial inner membrane. EMBO J 4: 3509-3518.
-
(1985)
EMBO J
, vol.4
, pp. 3509-3518
-
-
Hurt, E.C.1
Muller, U.2
Schatz, G.3
-
49
-
-
57749105200
-
Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean
-
Innes RW, Ameline-Torregrosa C, Ashfield T, Cannon E, Cannon S, Chacko B, Chen NWG, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Hans CS, Howell S, Ilut D, Jackson S, Lai H, Mammadov J, Martin del Campo S, Metcalf M, Nguyen A, O'Bleness M, Pfeil BE, Podicheti R, Ratnaparkhe MB, Samain S, Sanders I, Segurens B, Sevignac M, Sherman-Broyles S, Thareau V, Tucker DM, Walling J, Wawrzynski A, Yi J, Doyle JJ, Geffroy V, Roe BA, Saghai Maroof MA, Young ND (2008) Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiol 148: 1740-1759.
-
(2008)
Plant Physiol
, vol.148
, pp. 1740-1759
-
-
Innes, R.W.1
Ameline-Torregrosa, C.2
Ashfield, T.3
Cannon, E.4
Cannon, S.5
Chacko, B.6
Chen, N.W.G.7
Couloux, A.8
Dalwani, A.9
Denny, R.10
Deshpande, S.11
Egan, A.N.12
Glover, N.13
Hans, C.S.14
Howell, S.15
Ilut, D.16
Jackson, S.17
Lai, H.18
Mammadov, J.19
Martin del Campo, S.20
Metcalf, M.21
Nguyen, A.22
O'Bleness, M.23
Pfeil, B.E.24
Podicheti, R.25
Ratnaparkhe, M.B.26
Samain, S.27
Sanders, I.28
Segurens, B.29
Sevignac, M.30
Sherman-Broyles, S.31
Thareau, V.32
Tucker, D.M.33
Walling, J.34
Wawrzynski, A.35
Yi, J.36
Doyle, J.J.37
Geffroy, V.38
Roe, B.A.39
Saghai Maroof, M.A.40
Young, N.D.41
more..
-
50
-
-
46249123730
-
Genome-wide survey of the RIP domain family in Oryza sativa and their expression profiles under various abiotic and biotic stresses
-
Jiang SY, Ramamoorthy R, Bhalla R, Luan HF, Venkatesh PN, Cai M, Ramachandran S (2008) Genome-wide survey of the RIP domain family in Oryza sativa and their expression profiles under various abiotic and biotic stresses. Plant Mol Biol 67: 603-614.
-
(2008)
Plant Mol Biol
, vol.67
, pp. 603-614
-
-
Jiang, S.Y.1
Ramamoorthy, R.2
Bhalla, R.3
Luan, H.F.4
Venkatesh, P.N.5
Cai, M.6
Ramachandran, S.7
-
51
-
-
33645418720
-
Development of four phylogenetically-arrayed BAC libraries and sequence of the APA locus in Phaseolus vulgaris
-
Kami J, Poncet V, Geffroy V, Gepts P (2006) Development of four phylogenetically-arrayed BAC libraries and sequence of the APA locus in Phaseolus vulgaris. Theor Appl Genet 112: 987-998.
-
(2006)
Theor Appl Genet
, vol.112
, pp. 987-998
-
-
Kami, J.1
Poncet, V.2
Geffroy, V.3
Gepts, P.4
-
52
-
-
1842432608
-
The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions
-
Kleffmann T, Russenberger D, von Zychlinski A, Christopher W, Sjolander K, Gruissem W, Baginsky S (2004) The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. Curr Biol 14: 354-362.
-
(2004)
Curr Biol
, vol.14
, pp. 354-362
-
-
Kleffmann, T.1
Russenberger, D.2
von Zychlinski, A.3
Christopher, W.4
Sjolander, K.5
Gruissem, W.6
Baginsky, S.7
-
53
-
-
33645002772
-
Pathogen-responsive expression of glycosyltransferase genes UGT73B3 and UGT73B5 is necessary for resistance to Pseudomonas syringae pv tomato in Arabidopsis
-
Langlois-Meurinne M, Gachon CMM, Saindrenan P (2005) Pathogen-responsive expression of glycosyltransferase genes UGT73B3 and UGT73B5 is necessary for resistance to Pseudomonas syringae pv tomato in Arabidopsis. Plant Physiol 139: 1890-1901.
-
(2005)
Plant Physiol
, vol.139
, pp. 1890-1901
-
-
Langlois-Meurinne, M.1
Gachon, C.M.M.2
Saindrenan, P.3
-
54
-
-
25144446148
-
Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary
-
Lavin M, Herendeen PS, Wojciechowski MF (2005) Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary. Syst Biol 54: 575-594.
-
(2005)
Syst Biol
, vol.54
, pp. 575-594
-
-
Lavin, M.1
Herendeen, P.S.2
Wojciechowski, M.F.3
-
55
-
-
0033844339
-
Purification and characterization of formate dehydrogenase from Arabidopsis thaliana
-
Li R, Ziola B, King J (2000) Purification and characterization of formate dehydrogenase from Arabidopsis thaliana. J Plant Physiol 157: 161-167.
-
(2000)
J Plant Physiol
, vol.157
, pp. 161-167
-
-
Li, R.1
Ziola, B.2
King, J.3
-
56
-
-
0034890152
-
Molecular characterization and regulation of formate dehydrogenase in Arabidopsis thaliana
-
Li R, Bonham-Smith PC, King J (2001) Molecular characterization and regulation of formate dehydrogenase in Arabidopsis thaliana. Can J Bot 79: 796-804.
-
(2001)
Can J Bot
, vol.79
, pp. 796-804
-
-
Li, R.1
Bonham-Smith, P.C.2
King, J.3
-
57
-
-
0036800777
-
Overexpression of formate dehydrogenase in Arabidopsis thaliana resulted in plants tolerant to high concentrations of formate
-
Li R, Moore M, Bonham-Smith PC, King J (2002) Overexpression of formate dehydrogenase in Arabidopsis thaliana resulted in plants tolerant to high concentrations of formate. J Plant Physiol 159: 1069-1076.
-
(2002)
J Plant Physiol
, vol.159
, pp. 1069-1076
-
-
Li, R.1
Moore, M.2
Bonham-Smith, P.C.3
King, J.4
-
58
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
-
Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25: 402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
59
-
-
0037217005
-
Identifying resistance gene analogs associated with resistances to different pathogens in common bean
-
Lopez CE, Acosta IF, Jara C, Pedraza F, Gaitan-Solis E, Gallego G, Beebe S, Tohme J (2003) Identifying resistance gene analogs associated with resistances to different pathogens in common bean. Phytopathology 93: 88-95.
-
(2003)
Phytopathology
, vol.93
, pp. 88-95
-
-
Lopez, C.E.1
Acosta, I.F.2
Jara, C.3
Pedraza, F.4
Gaitan-Solis, E.5
Gallego, G.6
Beebe, S.7
Tohme, J.8
-
60
-
-
0032519353
-
GeneMark.hmm: new solutions for gene finding
-
Lukashin AV, Borodovsky M (1998) GeneMark. hmm: new solutions for gene finding. Nucleic Acids Res 26: 1107-1115.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
61
-
-
0142057020
-
Understanding the functions of plant disease resistance proteins
-
Martin GB, Bogdanove AJ, Sessa G (2003) Understanding the functions of plant disease resistance proteins. Ann Rev Plant Biol 54: 23-61.
-
(2003)
Ann Rev Plant Biol
, vol.54
, pp. 23-61
-
-
Martin, G.B.1
Bogdanove, A.J.2
Sessa, G.3
-
63
-
-
4544240497
-
The anthracnose resistance locus Co-4 of common bean is located on chromosome 3 and contains putative disease resistance-related genes
-
Melotto M, Coelho MF, Pedrosa Harand A, Kelly JD, Camargo LEA (2004) The anthracnose resistance locus Co-4 of common bean is located on chromosome 3 and contains putative disease resistance-related genes. Theor Appl Genet 109: 690-699.
-
(2004)
Theor Appl Genet
, vol.109
, pp. 690-699
-
-
Melotto, M.1
Coelho, M.F.2
Pedrosa Harand, A.3
Kelly, J.D.4
Camargo, L.E.A.5
-
64
-
-
0016776212
-
Formate as an inhibitor of cytochrome-C oxidase
-
Nicholls P (1975) Formate as an inhibitor of cytochrome-C oxidase. Biochem Biophys Res Commun 67: 610-616.
-
(1975)
Biochem Biophys Res Commun
, vol.67
, pp. 610-616
-
-
Nicholls, P.1
-
65
-
-
0034613540
-
Formate dehydrogenase in Arabidopsis thaliana: characterization and possible targeting to the chloroplast
-
Olson B, Skavdahl M, Ramberg H, Osterman JC, Markwell J (2000) Formate dehydrogenase in Arabidopsis thaliana: characterization and possible targeting to the chloroplast. Plant Sci 159: 205-212.
-
(2000)
Plant Sci
, vol.159
, pp. 205-212
-
-
Olson, B.1
Skavdahl, M.2
Ramberg, H.3
Osterman, J.C.4
Markwell, J.5
-
66
-
-
0027937347
-
NAD(+)-Dependent formate dehydrogenase
-
Popov VO, Lamzin VS (1994) NAD(+)-Dependent formate dehydrogenase. Biochem J 301: 625-643.
-
(1994)
Biochem J
, vol.301
, pp. 625-643
-
-
Popov, V.O.1
Lamzin, V.S.2
-
67
-
-
48349132316
-
Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower
-
Radwan O, Gandhi S, Heesacker A, Whitaker B, Taylor C, Plocik A, Kesseli R, Kozik A, Michelmore RW, Knapp SJ (2008) Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower. Mol Genet Genomics 280: 111-125.
-
(2008)
Mol Genet Genomics
, vol.280
, pp. 111-125
-
-
Radwan, O.1
Gandhi, S.2
Heesacker, A.3
Whitaker, B.4
Taylor, C.5
Plocik, A.6
Kesseli, R.7
Kozik, A.8
Michelmore, R.W.9
Knapp, S.J.10
-
68
-
-
34247115054
-
Brothers in arms? Common and contrasting themes in pathogen perception by plant NB-LRR and animal NACHT-LRR proteins
-
Rairdan G, Moffett P (2007) Brothers in arms? Common and contrasting themes in pathogen perception by plant NB-LRR and animal NACHT-LRR proteins. Microbes Infect 9: 677-686.
-
(2007)
Microbes Infect
, vol.9
, pp. 677-686
-
-
Rairdan, G.1
Moffett, P.2
-
69
-
-
20444490755
-
Sequencing and analysis of common bean ESTs. Building a foundation for functional genomics
-
Ramirez M, Graham MA, Blanco-Lopez L, Silvente S, Medrano-Soto A, Blair MW, Hernandez G, Vance CP, Lara M (2005) Sequencing and analysis of common bean ESTs. Building a foundation for functional genomics. Plant Physiol 137: 1211-1227.
-
(2005)
Plant Physiol
, vol.137
, pp. 1211-1227
-
-
Ramirez, M.1
Graham, M.A.2
Blanco-Lopez, L.3
Silvente, S.4
Medrano-Soto, A.5
Blair, M.W.6
Hernandez, G.7
Vance, C.P.8
Lara, M.9
-
71
-
-
0037898426
-
Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane
-
Rossi M, Araujo PG, Paulet F, Garsmeur O, Dias VM, Chen H, van Sluys MA, D'Hont A (2003) Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane. Mol Genet Genomics 269: 406-419.
-
(2003)
Mol Genet Genomics
, vol.269
, pp. 406-419
-
-
Rossi, M.1
Araujo, P.G.2
Paulet, F.3
Garsmeur, O.4
Dias, V.M.5
Chen, H.6
van Sluys, M.A.7
D'Hont, A.8
-
72
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B (2000) Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
73
-
-
56149088569
-
Genome structure of the legume, Lotus japonicus
-
Sato S, Nakamura Y, Kaneko T, Asamizu E, Kato T, Nakao M, Sasamoto S, Watanabe A, Ono A, Kawashima K, Fujishiro T, Katoh M, Kohara M, Kishida Y, Minami C, Nakayama S, Nakazaki N, Shimizu Y, Shinpo S, Takahashi C, Wada T, Yamada M, Ohmido N, Hayashi M, Fukui K, Baba T, Nakamichi T, Mori H, Tabata S (2008) Genome structure of the legume, Lotus japonicus. DNA Res 15: 227-239.
-
(2008)
DNA Res
, vol.15
, pp. 227-239
-
-
Sato, S.1
Nakamura, Y.2
Kaneko, T.3
Asamizu, E.4
Kato, T.5
Nakao, M.6
Sasamoto, S.7
Watanabe, A.8
Ono, A.9
Kawashima, K.10
Fujishiro, T.11
Katoh, M.12
Kohara, M.13
Kishida, Y.14
Minami, C.15
Nakayama, S.16
Nakazaki, N.17
Shimizu, Y.18
Shinpo, S.19
Takahashi, C.20
Wada, T.21
Yamada, M.22
Ohmido, N.23
Hayashi, M.24
Fukui, K.25
Baba, T.26
Nakamichi, T.27
Mori, H.28
Tabata, S.29
more..
-
74
-
-
0029310449
-
Dark induction and subcellular-localization of the pathogenesis-related PRB1-1b protein
-
Sessa G, Yang XQ, Rat V, Eyal Y, Fluhr R (1995) Dark induction and subcellular-localization of the pathogenesis-related PRB1-1b protein. Plant Mol Biol 28: 537-547.
-
(1995)
Plant Mol Biol
, vol.28
, pp. 537-547
-
-
Sessa, G.1
Yang, X.Q.2
Rat, V.3
Eyal, Y.4
Fluhr, R.5
-
75
-
-
33644532857
-
Paleopolyploidy and gene duplication in soybean and other legumes
-
Shoemaker RC, Schlueter J, Doyle JJ (2006) Paleopolyploidy and gene duplication in soybean and other legumes. Curr Opin Plant Biol 9: 104-109.
-
(2006)
Curr Opin Plant Biol
, vol.9
, pp. 104-109
-
-
Shoemaker, R.C.1
Schlueter, J.2
Doyle, J.J.3
-
76
-
-
2942589051
-
Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences
-
Small I, Peeters N, Legeai F, Lurin C (2004) Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics 4: 1581-1590.
-
(2004)
Proteomics
, vol.4
, pp. 1581-1590
-
-
Small, I.1
Peeters, N.2
Legeai, F.3
Lurin, C.4
-
77
-
-
51749116757
-
Gene expression and sensitivity in response to copper stress in rice leaves
-
Sudo E, Itouga M, Yoshida-Hatanaka K, Ono Y, Sakakibara H (2008) Gene expression and sensitivity in response to copper stress in rice leaves. J Exp Bot 59: 3465-3474.
-
(2008)
J Exp Bot
, vol.59
, pp. 3465-3474
-
-
Sudo, E.1
Itouga, M.2
Yoshida-Hatanaka, K.3
Ono, Y.4
Sakakibara, H.5
-
78
-
-
0031992030
-
Formate dehydrogenase, an enzyme of anaerobic metabolism, is induced by iron deficiency in barley roots
-
Suzuki K, Itai R, Suzuki K, Nakanishi H, Nishizawa NK, Yoshimura E, Mori S (1998) Formate dehydrogenase, an enzyme of anaerobic metabolism, is induced by iron deficiency in barley roots. Plant Physiol 116: 725-732.
-
(1998)
Plant Physiol
, vol.116
, pp. 725-732
-
-
Suzuki, K.1
Itai, R.2
Suzuki, K.3
Nakanishi, H.4
Nishizawa, N.K.5
Yoshimura, E.6
Mori, S.7
-
79
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
80
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
81
-
-
77955847189
-
Sur la presence de certains ferments oxydants dans les grains de Phaseolus vulgaris
-
Thunberg T (1921) Sur la presence de certains ferments oxydants dans les grains de Phaseolus vulgaris. Arch Int Physiol 18: 601-606.
-
(1921)
Arch Int Physiol
, vol.18
, pp. 601-606
-
-
Thunberg, T.1
-
82
-
-
0018503022
-
Purification of formaldehyde and formate dehydrogenases from pea seeds by affinity chromatography and S-formylglutathione as the intermediate of formaldehyde metabolism
-
Uotila L, Koivusalo M (1979) Purification of formaldehyde and formate dehydrogenases from pea seeds by affinity chromatography and S-formylglutathione as the intermediate of formaldehyde metabolism. Arch Biochem Biophys 196: 33-45.
-
(1979)
Arch Biochem Biophys
, vol.196
, pp. 33-45
-
-
Uotila, L.1
Koivusalo, M.2
-
83
-
-
0017146518
-
S-formylglutathione: the substrate for formate dehydrogenase in methanol-utilizing yeasts
-
van Dijken JP, Oostra-Demkes GT, Otto R, Harder W (1976) S-formylglutathione: the substrate for formate dehydrogenase in methanol-utilizing yeasts. Arch Microbiol 111: 77-83.
-
(1976)
Arch Microbiol
, vol.111
, pp. 77-83
-
-
van Dijken, J.P.1
Oostra-Demkes, G.T.2
Otto, R.3
Harder, W.4
-
84
-
-
33748941620
-
Significance of inducible defense-related proteins in infected plants
-
van Loon LC, Rep M, Pieterse CMJ (2006) Significance of inducible defense-related proteins in infected plants. Annu Rev Phytopathol 44: 135-162.
-
(2006)
Annu Rev Phytopathol
, vol.44
, pp. 135-162
-
-
van Loon, L.C.1
Rep, M.2
Pieterse, C.M.J.3
-
85
-
-
0022731676
-
Mitochondrial targeting sequences may form amphiphilic helices
-
von Heijne G (1986) Mitochondrial targeting sequences may form amphiphilic helices. EMBO J 5: 1335-1342.
-
(1986)
EMBO J
, vol.5
, pp. 1335-1342
-
-
von Heijne, G.1
-
86
-
-
20444439240
-
Sequencing the genespaces of Medicago truncatula and Lotus japonicus
-
Young ND, Cannon SB, Sato S, Kim D, Cook DR, Town CD, Roe BA, Tabata S (2005) Sequencing the genespaces of Medicago truncatula and Lotus japonicus. Plant Physiol 137: 1174-1181.
-
(2005)
Plant Physiol
, vol.137
, pp. 1174-1181
-
-
Young, N.D.1
Cannon, S.B.2
Sato, S.3
Kim, D.4
Cook, D.R.5
Town, C.D.6
Roe, B.A.7
Tabata, S.8
-
87
-
-
0042424971
-
Physiological role of S-formylglutathione hydrolase in C-1 metabolism of the methylotrophic yeast Candida boidinii
-
Yurimoto H, Lee B, Yano T, Sakai Y, Kato N (2003) Physiological role of S-formylglutathione hydrolase in C-1 metabolism of the methylotrophic yeast Candida boidinii. Microbiology Sgm 149: 1971-1979.
-
(2003)
Microbiology Sgm
, vol.149
, pp. 1971-1979
-
-
Yurimoto, H.1
Lee, B.2
Yano, T.3
Sakai, Y.4
Kato, N.5
-
88
-
-
0035991196
-
Phylogeny and genomic organization of the TIR and non-TIR NBS-LRR resistance gene family in Medicago truncatula
-
Zhu HY, Cannon SB, Young ND, Cook DR (2002) Phylogeny and genomic organization of the TIR and non-TIR NBS-LRR resistance gene family in Medicago truncatula. Mol Plant Microbe Interact 15: 529-539.
-
(2002)
Mol Plant Microbe Interact
, vol.15
, pp. 529-539
-
-
Zhu, H.Y.1
Cannon, S.B.2
Young, N.D.3
Cook, D.R.4
|