Multiple-locus variable-number tandem-repeat analysis of the swine dysentery pathogen, Brachyspira hyodysenteriae

Journal of Clinical Microbiology

Volumn 48, Issue 8, 2010, Pages 2859-2865

  Hidalgo, Álvaro ^a   Carvajal, Ana ^a   La, Tom ^b   Naharro, Germán ^a   Rubio, Pedro ^a   Phillips, Nyree D ^b   Hampson, David J ^b  

^a UNIVERSITY OF LEÓN   (Spain)

^b MURDOCH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; BACTERIAL STRAIN; BACTERIAL TRANSMISSION; BACTERIUM ISOLATE; BRACHYSPIRA HYODYSENTERIAE; CAPILLARY ELECTROPHORESIS; CLONAL VARIATION; DYSENTERY; EUROPE; EXPERIMENTAL PIG; GENETIC VARIABILITY; LABORATORY DIAGNOSIS; MICROBIOLOGICAL EXAMINATION; MULTIPLE LOCUS VARIABLE NUMBER OF TANDEM REPEAT ANALYSIS; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; POPULATION STRUCTURE; PRIORITY JOURNAL; VARIABLE NUMBER OF TANDEM REPEAT; VETERINARY MEDICINE; ANIMAL; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA FINGERPRINTING; EVALUATION STUDY; GENETICS; GENOTYPE; GRAM NEGATIVE INFECTION; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR EPIDEMIOLOGY; PROCEDURES; SWINE; SWINE DISEASE; VETERINARY;

ANIMALS; BACTERIAL TYPING TECHNIQUES; BRACHYSPIRA HYODYSENTERIAE; DNA FINGERPRINTING; DYSENTERY; GENOTYPE; GRAM-NEGATIVE BACTERIAL INFECTIONS; MINISATELLITE REPEATS; MOLECULAR EPIDEMIOLOGY; SWINE; SWINE DISEASES;

BRACHYSPIRA HYODYSENTERIAE; SPIROCHAETALES; SUIDAE;

EID: 77955442485     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00348-10     Document Type: Article

References (35)

1. Al Dahouk, S., P. Le Flèche, K. Nöckler, I. Jacques, M. Grayon, H. C. Scholz, H. Tomaso, G. Vergnaud, and H. Neubauer. 2007. Evaluation of Brucella MLVA typing for human brucellosis. J. Microbiol. Methods 69:137-145.
2. Atyeo, R. F., S. L. Oxberry, and D. J. Hampson. 1999. Analysis of Serpulina hyodysenteriae strain variation and its molecular epidemiology using pulsed-field gel electrophoresis. Epidemiol. Infect. 123:133-138.
3. Baum, D. H., and L. A. Joens. 1979. Serotypes of beta-haemolytic Treponema hyodysenteriae. Infect. Immun. 25:792-796.
4. Bellgard, M. I., P. Wanchanthuek, T. La, K. Ryan, P. Moolhuijzen, Z. Albertyn, B. Shaban, Y. Motro, D. S. Dunn, D. Schibeci, A. Hunter, R. Barrero, N. D. Phillips, and D. J. Hampson. 2009. Genome sequence of the pathogenic intestinal spirochete Brachyspira hyodysenteriae reveals adaptations to its lifestyle in the porcine large intestine. PLoS One 4:e4641.
5. Benson, G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27:573-580. (Pubitemid 29210025)
6. Combs, B., D. J. Hampson, J. R. Mhoma, and J. R. Buddle. 1989. Typing of Treponema hyodysenteriae by restriction endonuclease analysis. Vet. Microbiol. 19:351-359.
7. Combs, B. G., D. J. Hampson, and S. J. Harders. 1992. Typing of Australian isolates of Treponema hyodysenteriae by serology and by DNA restriction endonuclease analysis. Vet. Microbiol. 31:273-285.
8. Dugourd, D., M. Jacques, M. Bigras-Poulin, and J. Harel. 1996. Characterization of Serpulina hyodysenteriae isolates of serotypes 8 and 9 by random amplification of polymorphic DNA analysis. Vet. Microbiol. 48:305-314.
9. Feberwee, A., D. J. Hampson, N. D. Phillips, T. La, H. M. van der Heijden, G. J. Wellenberg, R. M. Dwars, and W. J. Landman. 2008. Identification of Brachyspira hyodysenteriae and other pathogenic Brachyspira species in chickens from laying flocks with diarrhea or reduced production or both. J. Clin. Microbiol. 46:593-600.
10. Feil, E. J., B. C. Li, D. M. Aanensen, W. P. Hanage, and B. G. Spratt. 2004. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J. Bacteriol. 186:1518-1530.
11. Fellström, C., M. Karlsson, B. Pettersson, U. Zimmerman, A. Gunnarsson, and A. Aspan. 1999. Emended descriptions of indole negative and indole positive isolates of Brachyspira (Serpulina) hyodysenteriae. Vet. Microbiol. 70:225-238.
12. Francisco, A. P., M. Bugalho, M. Ramirez, and J. A. Carriço. 2009. Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach. BMC Bioinformatics 10:152.
13. Gorgé, O., S. Lopez, V. Hilaire, O. Lisanti, V. Ramisse, and G. Vergnaud. 2008. Selection and validation of a multilocus variable-number tandem-repeat analysis panel for typing Shigella spp. J. Clin. Microbiol. 46:1026-1036. (Pubitemid 351379997)
14. Grundmann, H., S. Hori, and G. Tanner. 2001. Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. J. Clin. Microbiol. 39:4190-4192.
15. Hampl, V., A. Pavlícek, and J. Flegr. 2001. Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with the freeware program FreeTree: application to trichomonad parasites. Int. J. Syst. Evol. Microbiol. 51:731-735.
16. Hampson, D. J., R. F. Atyeo, and B. G. Combs. 1997. Swine dysentery, p. 175-209. In D. J. Hampson and T. B. Stanton (ed.), Intestinal spirochaetes in domestic animals and humans. CAB International, Wallingford, United Kingdom.
17. Hampson, D. J., C. Fellström, and J. R. Thomson. 2006. Swine dysentery, p. 785-805. In B. E. Straw, J. J. Zimmerman, S. D'Allaire, and D. J. Taylor (ed.), Diseases of swine, 9th ed. Blackwell Publishing, Ames, IA.
18. Haubold, B., M. Travisano, P. B. Rainey, and R. R. Hudson. 1998. Detecting linkage disequilibrium in bacterial populations. Genetics 150:1341-1348. (Pubitemid 28555540)
19. Hidalgo, Á., A. Carvajal, M. Pringle, P. Rubio, and C. Fellström. 2010. Characterization and epidemiological relationships of Spanish Brachyspira hyodysenteriae field isolates. Epidemiol. Infect. 138:76-85.
20. Hunter, P. R., and M. A. Gaston. 1988. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26:2465-2466.
21. Jensen, N. S., and T. B. Stanton. 1993. Comparison of Serpulina hyodysenteriae B78, the type strain of the species, with other S. hyodysenteriae strains using enteropathogenicity studies and restriction fragment length polymorphism analysis. Vet. Microbiol. 36:221-231.
22. Johansson, A., J. Farlow, P. Larsson, M. Dukerich, E. Chambers, M. Byström, J. Fox, M. Chu, M. Forsman, A. Sjöstedt, and P. Keim. 2004. Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis. J. Bacteriol. 186:5808-5818.
23. Jolley, K. A., E. J. Feil, M. S. Chan, and M. C. Maiden. 2001. Sequence type analysis and recombinational tests (START). Bioinformatics 17:1230-1231.
24. La, T., N. D. Phillips, B. L. Harland, P. Wanchanthuek, M. I. Bellgard, and D. J. Hampson. 2009. Multilocus sequence typing as a tool for studying the molecular epidemiology and population structure of Brachyspira hyodysenteriae. Vet. Microbiol. 138:330-338.
25. Lee, J. I., D. J. Hampson, B. G. Combs, and A. J. Lymbery. 1993. Genetic relationships between isolates of Serpulina (Treponema) hyodysenteriae, and comparison of methods for their subspecific differentiation. Vet. Microbiol. 34:35-46.
26. Lindstedt, B. A. 2005. Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria. Electrophoresis 26:2567-2582.
27. Matson, E. G., R. L. Zuerner, and T. B. Stanton. 2007. Induction and transcription of VSH-1, a prophage-like gene transfer agent of Brachyspira hyodysenteriae. Anaerobe 13:89-97.
28. Pasqualotto, A. C., D. W. Denning, and M. J. Anderson. 2007. A cautionary tale: lack of consistency in allele sizes between two laboratories for a published multilocus microsatellite typing system. J. Clin. Microbiol. 45:522-528.
29. Pourcel, C., F. André-Mazeaud, H. Neubauer, F. Ramisse, and G. Vergnaud. 2004. Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis. BMC Microbiol. 4:22. (Pubitemid 39319742)
30. Råsbäck, T., D. S. Jansson, K. E. Johansson, and C. Fellström. 2007. A novel enteropathogenic, strongly haemolytic spirochaete isolated from pig and mallard, provisionally designated "Brachyspira suanatina" sp. nov. Environ. Microbiol. 9:983-991.
31. Rocha, E. P., A. Danchin, and A. Viari. 1999. Functional and evolutionary roles of long repeats in prokaryotes. Res. Microbiol. 150:725-733.
32. Smith, J. M., N. H. Smith, M. O'Rourke, and B. G. Spratt. 1993. How clonal are bacteria? Proc. Natl. Acad. Sci. U. S. A. 90:4384-4388.
33. Supply, P., R. M. Warren, A. L. Bañuls, S. Lesjean, G. D. Van Der Spuy, L. A. Lewis, M. Tibayrenc, P. D. Van Helden, and C. Locht. 2003. Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area. Mol. Microbiol. 47:529-538.
34. Trott, D. J., S. L. Oxberry, and D. J. Hampson. 1997. Evidence for Serpulina hyodysenteriae being recombinant, with an epidemic population structure. Microbiology 143:3357-3365.
35. van Belkum, A. 2007. Tracing isolates of bacterial species by multilocus variable number of tandem repeat analysis (MLVA). FEMS Immunol. Med. Microbiol. 49:22-27.