Analysis of enzyme kinetic data for mtDNA replication

Methods

Volumn 51, Issue 4, 2010, Pages 385-391

  Song, Zhuo ^a   Samuels, David C ^a  

^a VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

MtDNA; Polymerase errors; Stochastic simulation

Indexed keywords

ACICLOVIR; DIDANOSINE; DNA DIRECTED DNA POLYMERASE GAMMA; EXONUCLEASE; FIALURIDINE; LAMIVUDINE; MITOCHONDRIAL DNA; NUCLEOSIDE ANALOG; NUCLEOSIDE TRIPHOSPHATE; STAVUDINE; ZALCITABINE; ZIDOVUDINE;

ALGORITHM; ARTICLE; BASE PAIRING; COMPUTER PROGRAM; DATA ANALYSIS; DNA REPLICATION; DNA TEMPLATE; DRUG MECHANISM; ENZYME KINETICS; ENZYME MECHANISM; HUMAN; MICHAELIS MENTEN KINETICS; MITOCHONDRIAL TOXICITY; POLYMERIZATION; PRIORITY JOURNAL; PROTEIN FUNCTION; SIMULATION; STOCHASTIC MODEL;

ALGORITHMS; DEOXYRIBONUCLEOTIDES; DNA REPLICATION; DNA, MITOCHONDRIAL; DNA-DIRECTED DNA POLYMERASE; KINETICS; MODELS, BIOLOGICAL; MUTATION; STOCHASTIC PROCESSES; SUBSTRATE SPECIFICITY;

EID: 77955268966     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2010.02.019     Document Type: Article

References (24)

1. Kaguni L.S. Annual Review of Biochemistry 2004, 73:293-320.
2. Fan L., Kim S., Farr C.L., Schaefer K.T., Randolph K.M., Tainer J.A., Kaguni L.S. Journal of Molecular Biology 2006, 35:1229-1243.
3. Gillespie D.T. Journal of Computational Physics 1976, 22:403-434.
4. Cao Y., Samuels D.C. Methods in Enzymology: Computer Methods 2009, 454:115-140.
5. Patel S.S., Wong I., Johnson K.A. Biochemistry 1991, 30:511-525.
6. Johnson A.A., Johnson K.A. Journal of Biological Chemistry 2001, 276:38097-38107.
7. Johnson A.A., Johnson K.A. Journal of Biological Chemistry 2001, 276:38090-38096.
8. Johnson A.A., Ray A.S., Hanes J., Suo Z.C., Colacino J.M., Anderson K.S., Anderson K.A. Journal of Biological Chemistry 2001, 276:40847-40857.
9. Johnson A.A., Tsai Y.C., Graves S.W., Graves K.A. Biochemistry 2000, 39:1702-1708.
10. Wendelsdorf K.V., Song Z., Cao Y., Samuels D.C. PloS Computational Biology 2009, 5:e1000261.
11. Bradshaw P.C., Samuels D.C. American Journal of Physiology-Cell Physiology 2005, 288:C989-C1002.
12. Saada A. DNA and Cell Biology 2004, 23:797-806.
13. Kang J., Samuels D.C. Mitochondrion 2008, 8:103-108.
14. Lee H.R., Johnson K.A. Journal of Biological Chemistry 2006, 281:36236-36240.
15. Anderson P.L., Kakuda T.N., Lichtenstein K.A. Clinical Infectious Diseases 2004, 38:743-753.
16. Lewis W., Day B.J., Copeland W.C. Nature Reviews Drug Discovery 2003, 2:812-822.
17. Hanes J.W., Zhu Y., Parris D.S., Johnson K.A. Journal of Biological Chemistry 2007, 282:25159-25167.
18. Martin J.L., Brown C.E., Matthews-Davis N., Reardon J.E. Antimicrobial Agents and Chemotherapy 1994, 38:2743-2749.
19. Feng J.Y., Murakami E., Zorca S.M., Johnson A.A., Johnson K.A., Schinazi R.F., Furman P.A., Anderson K.S. Antimicrobial Agents and Chemotherapy 2004, 48:1300-1306.
20. Hanes J.W., Johnson K.A. Nucleic Acids Research 2007, 35:6973-6983.
21. Yasukawa T., Reyes A., Cluett T.J., Yang M.Y., Bowmaker M., Jacobs H.T., Holt I.J. EMBO Journal 2006, 25:5358-5371.
22. Pursell Z.F., McDonald J.T., Mathews C.K., Kunkel T.A. Nucleic Acids Research 2008, 36:2174-2181.
23. Li H., Cao Y., Petzold L.R., Gillespie D.T. Biotechnology Progress 2008, 24:56-61.
24. Le Novere N., Shimizu T.S. Bioinformatics 2001, 17:575-576.