Two novel coding SNPs of SREBP1c gene are associated with body weight and average daily gain in bovine

Animal Biotechnology

Volumn 21, Issue 3, 2010, Pages 170-178

  Huang, Yongzhen ^a   Zhang, Enping ^a   Wang, Jing ^a   Huai, Yongtao ^a   Lan, Xianyong ^a   Ma, Liang ^a   Li, Zhuanjian ^a   Ren, Gang ^a   Chen, Fuying ^a   Lei, Chuzhao ^a   Wang, Juqiang ^b   Chen, Hong ^a,c  

^a NORTHWEST A F UNIVERSITY   (China)

^b Research Center of Cattle Engineering Technology in Henan   (China)

^c JIANGSU NORMAL UNIVERSITY   (China)

Author keywords

Cattle; Forced PCR RFLP; Growth traits; SNP; SREBP1c gene

Indexed keywords

ASSOCIATION ANALYSIS; CATTLE; EXPRESSION LEVELS; FATTY ACID BIOSYNTHESIS; GENETIC VARIATION; GROWTH TRAITS; PCR-RFLP; SNP;

ANTHROPOMETRY; BIOCHEMISTRY; DNA SEQUENCES; GENE EXPRESSION; MAMMALS; POLYMERASE CHAIN REACTION;

GENE EXPRESSION REGULATION;

DNA; STEROL REGULATORY ELEMENT BINDING PROTEIN 1;

ANIMAL; ANIMAL DISEASE; ARTICLE; BODY WEIGHT; CATTLE; CHEMISTRY; CHI SQUARE DISTRIBUTION; GENETIC VARIABILITY; GENETICS; GENOTYPE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SINGLE NUCLEOTIDE POLYMORPHISM; BOVINAE; VETERINARY;

ANIMALS; BASE SEQUENCE; BODY WEIGHT; CATTLE; CHI-SQUARE DISTRIBUTION; DNA; GENETIC VARIATION; GENOTYPE; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYMORPHISM, SINGLE NUCLEOTIDE; STEROL REGULATORY ELEMENT BINDING PROTEIN 1;

BOS; BOVINAE;

EID: 77955201849     PISSN: 10495398     EISSN: 15322378     Source Type: Journal    
DOI: 10.1080/10495391003768813     Document Type: Article

References (26)

1. Eberle D, Hegarty B, Bossard P, Ferre P, Foufelle F. SREBP transcription factors, master regulators of lipid homeostasis. Biochimie. 2004;86:839-848.
2. Hannes O, Noriko F, Harald E, Franz K, Wolfgang P. Sterol regulatory element binding proteins: relationship of adipose tissue gene expression with obesity in humans. Biophysica Acta. 2002;1575:75-81.
3. Sakai J, Duncan EA, Rawson RB, Hua X, Brown MS, Goldstein JL. Sterol-regulated release of SREBP-2 from cell membranes requires two sequential cleavages, one within a transmembrane segment. Cell. 1996;85:1037-1046.
4. Brown MS, Goldstein JL. The SREBP pathway: regulation of cholesterol metabolism by proteolysis of a membrane-bound transcription factor. Cell. 1997;89:331-340.
5. Horton JD, Shimomura I. Sterol regulatory element-binding proteins: activators of cholesterol and fatty acid biosynthesis. Curr Opin Lipidol. 1999;10:143-150.
6. Kim JB, Sarraf P, Wright M, Yao KM, Mueller E, Solanes G, Lowell BB, Spiegelman BM. Nutritional and insulin regulation of fatty acid synthetase and leptin gene expression through ADD1=SREBP1. J Clin Invest. 1998;101:1-9.
7. Goldstein JL, Rawson RB, Brown MS. Mutant mammalian cells as tools to delineate the sterol regulatory element-binding protein pathway for feedback regulation of lipid synthesis. Arch Biochem Biophys. 2002;397:139-148.
8. Horton JD. Sterol regulatory element-binding proteins: transcriptional activators of lipid synthesis. Biochem Soc Trans. 2002;30:1091-1095.
9. Hua X, Wu J, Goldstein JL, Brown MS, Hobbs HH. Structure of the human gene encoding sterol regulatory element binding protein-1 (SREBF1) and localization of SREBF1 and SREBF2 to chromosomes 17p11.2 and 22q13. Genomics. 1995;25:667-673.
10. Shimano H, Horton JD, Hammer RE, Shimomura I, Brown MS, et al. Overproduction of cholesterol and fatty acids causesmassive liver enlargement in transgenic mice expressing Truncated SREBP-1a. J Clin Invest. 1996;98:1575-1584.
11. Shimano H, Horton JD, Shimomura I, Hammer RE, Brown MS, et al. Isoform 1c of sterol regulatory element binding protein is less active than isoform 1a in livers of transgenic mice and incultured cells. J Clin Invest. 1997;99:846-854.
12. Miserez AR, Cao G, Probst LC, Hobbs HH. Structure of thehuman gene encoding sterol regulatory element binding protein-2 (SREBF2). Genomics. 1997;40:31-40.
13. Horton JD, Shimomura I, Brown MS, Hammer RE, Goldstein JL, et al. Activation of cholesterol synthesis in preference tofatty acid synthesis in liver and adipose tissue of transgenic mice overproducing sterol regulatory element-binding protein-2. J Clin Invest. 1998;101:2331-2339.
14. Shimano H. Sterol regulatory element-binding proteins (SREBPs), transcriptional regulators of lipid synthetic genes. Prog Lipid Res. 2001;40:439-452.
15. Sambrook J, Russell DW. Translated by Huang Pei Tang. Molecular Cloning A Laboratory Manual. Science, Beijing 2002.
16. Zhang CL, Wang YH, Chen H, Lan XY, Lei CZ. Enhance the efficiency of single-strand conformation polymorphism analysis by short polyacrylamide gel and quick lowbackground silver staining. Annalistic Biochemistry. 2007;365:286-287.
17. Nei M, Roychoudhurg AK. Sampling variance of heterozygosity and genetic distance. Genetics. 1974;76:379-390.
18. Shi YY, He L. SHEsis, a powerful software platform for analyses of linkage disequilibrium, haplotype construction, and genetic association at polymorphism loci. Cell Res. 2005;15:97-98.
19. Boldman KG, Kriese IA, Ban Vleck LD, et al. A Manual for Use of MTDFREML: A Set of Programs to Obtain Estimates of Variances and Covariances. ARS. Washington, DC: USDA, 1993.
20. Zhao Q, Davis ME, Hines HC. Associations of polymorphisms in the Pit-1 gene with growth and carcass traits in Angus beef cattle. J Anim Sci. 2004;82(8):2229-2233.
21. Henderson CR. Estimation of variances in animal model and reduced animal model for single traits and single records. J Dairy Sci. 1986;69:1394-1402.
22. Ardlie KG, Kruglyak L, Seielstad M. Patterns of linkage disequilibrium in the human genome. Nat Rev Genet. 2002;3:299-309.
23. Eberle DK, Clement D, Meyre M, Sahbatou M, Vaxillaire A, Le Gall P, Ferre A, Basdevant P, Froguel, Foufelle F. SREBF-1 gene polymorphisms are associated with obesity and type 2 diabetes in French obese 263 and diabetic cohorts. Diabetes. 2004;53:2153-2157. (Pubitemid 38970769)
24. Chen J, Yang XJ, Xia D, Chen J, Wegner J, Jiang Z, Zhao PQ. Sterol regulatory element binding transcription factor 1 expression and genetic polymorphism significantly affect intramuscular fat deposition in the longissimus muscle of Erhualian and Sutai pigs. J Anim Sci. 2008;86:57-63.
25. Taylor JF, Coutinho LL, Herring KL, Gallagher Jr DS, Brenneman RA, Burney N, Sanders JO, Turner JW, Smith SB, Miller RK, Savell JW, Davis SK. Candidate Gene Analysis of Gh1 for effects on growth and carcass composition of cattle. Anim Genet. 1998;29(3):194-201.
26. Li C, Basarab J, Snelling WM, Benkel B, Kneeland J, Murdoch B, Hansen C, Moore SS. Identification and fine mapping of quantitative trait loci for backfat on bovine chromosomes 2, 5, 6, 19, 21, and 23 in a commercial line of Bos taurus. J Anim Sci. 2004;82:967-972. (Pubitemid 38572292)