3D structure of IP 3 receptor

Current Topics in Membranes

Volumn 66, Issue C, 2010, Pages 171-189

  Serysheva, Irina I ^a   Ludtke, Steven J ^b  

^a UNIVERSITY OF TEXAS MEDICAL SCHOOL   (United States)

^b BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77955098604     PISSN: 10635823     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S1063-5823(10)66008-5     Document Type: Chapter

References (66)

1. Amador F.J., Liu S., Ishiyama N., Plevin M.J., Wilson A., MacLennan D.H., et al. Crystal structure of type I ryanodine receptor amino-terminal beta-trefoil domain reveals a disease-associated mutation "hot spot" loop. Proceedings of the National Academy of Sciences of the United States of America 2009, 106:11040-11044.
2. Anyatonwu G., Joseph S.K. Surface accessibility and conformational changes in the N-terminal domain of type-I inositol trisphosphate receptors: Studies using cysteine substitution mutagenesis. The Journal of Biological Chemistry 2009, 284:8093-8102.
3. Boehning D., Joseph S.K. Direct association of ligand-binding and pore domains in homo- and heterotetrameric inositol 1,4,5-trisphosphate receptors. The EMBO Journal 2000, 19:5450-5459.
4. Bosanac I., Alattia J.R., Mal T.K., Chan J., Talarico S., Tong F.K., et al. Structure of the inositol 1,4,5-trisphosphate receptor binding core in complex with its ligand. Nature 2002, 420:696-700.
5. Bosanac I., Michikawa T., Mikoshiba K., Ikura M. Structural insights into the regulatory mechanism of IP3 receptor. Biochimica et Biophysica Acta 2004, 1742:89-102.
6. Bosanac I., Yamazaki H., Matsu-Ura T., Michikawa T., Mikoshiba K., Ikura M. Crystal structure of the ligand binding suppressor domain of type 1 inositol 1,4,5-trisphosphate receptor. Molecular Cell 2005, 17:193-203.
7. Chadwick C.C., Saito A., Fleischer S. Isolation and characteriztion of the inositol triphosphate receptor from smooth muscle. Proceedings of the National Academy of Sciences of the United States of America 1990, 87:2132-2136.
8. Chan J., Whitten A.E., Jeffries C.M., Bosanac I., Mal T.K., Ito J., et al. Ligand-induced conformational changes via flexible linkers in the amino-terminal region of the inositol 1,4,5-trisphosphate receptor. Journal of Molecular Biology 2007, 373:1269-1280.
9. Chen D.H., Song J.L., Chuang D.T., Chiu W., Ludtke S.J. An expanded conformation of single-ring GroEL-GroES complex encapsulates an 86kDa substrate. Structure 2006, 14:1711-1722.
10. Cheng L., Zhu J., Hui W.H., Zhang X., Honig B., Fang Q., et al. Backbone model of an aquareovirus virion by cryo-electron microscopy and bioinformatics. Journal of Molecular Biology 2010, 397:852-863.
11. Chiu W., Downing K.H., Dubochet J., Glaeser R.M., Heide H.G., Knapek E., et al. Cryoprotection in electron microscopy. Journal de Microscopie 1986, 141:385-391.
12. Choe C.U., Ehrlich B.E. The inositol 1,4,5-trisphosphate receptor (IP3R) and its regulators: Sometimes good and sometimes bad teamwork. Science STKE 2006, 2006:re15.
13. Cong Y., Baker M.L., Jakana J., Woolford D., Miller E.J., Reissmann S., et al. 4.0-å resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement. Proceedings of the National Academy of Sciences of the United States of America 2010, 107:4967-4972.
14. da Fonseca P.C., Morris S.A., Nerou E.P., Taylor C.W., Morris E.P. Domain organization of the type 1 inositol 1,4,5-trisphosphate receptor as revealed by single-particle analysis. Proceedings of the National Academy of Sciences of the United States of America 2003, 100:3936-3941.
15. Dubochet J., Adrian M., Chang J.J., Homo J.C., Lepault J., McDowall A.W., et al. Cryo-electron microscopy of vitrified specimens. Quarterly Reviews of Biophysics 1988, 21:129-228.
16. 2+ release channels. Physiological Reviews 2007, 87:593-658.
17. Frank J., Agrawal R.K. A ratchet-like inter-subunit reorganization of the ribosome during translocation. Nature 2000, 406:318-322.
18. Furuichi T., Yoshikawa S., Miyawaki A., Wada K., Maeda N., Mikoshiba K. Primary structure and functional expression of the inositol 1,4,5-trisphosphate-binding protein P400. Nature 1989, 342:32-38.
19. Hamada K., Miyata T., Mayanagi K., Hirota J., Mikoshiba K. Two-state conformational changes in inositol 1,4,5-trisphosphate receptor regulated by calcium. The Journal of Biological Chemistry 2002, 277:21115-21118.
20. Hamada K., Terauchi A., Mikoshiba K. Three-dimensional rearrangements within inositol 1,4,5-trisphosphate receptor by calcium. The Journal of Biological Chemistry 2003, 278:52881-52889.
21. Herndon R.M. The fine structure of the Purkinje cell. The Journal of Cell Biology 1963, 18:167-180.
22. Huber A.H., Nelson W.J., Weis W.I. Three-dimensional structure of the armadillo repeat region of beta-catenin. Cell 1997, 90:871-882.
23. Iwai M., Michikawa T., Bosanac I., Ikura M., Mikoshiba K. Molecular basis of the isoform-specific ligand-binding affinity of inositol 1,4,5-trisphosphate receptors. The Journal of Biological Chemistry 2007, 282:12755-12764.
24. Jiang W., Baker M.L., Jakana J., Weigele P.R., King J., Chiu W. Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy. Nature 2008, 451:1130-1134.
25. Jiang Y., Lee A., Chen J., Cadene M., Chait B.T., MacKinnon R. Crystal structure and mechanism of a calcium-gated potassium channel. Nature 2002, 417:515-522.
26. Jiang Q.X., Thrower E.C., Chester D.W., Ehrlich B.E., Sigworth F.J. Three-dimensional structure of the type 1 inositol 1,4,5-trisphosphate receptor at 24 å resolution. The EMBO Journal 2002, 21:3575-3581.
27. Katayama E., Funahashi H., Michikawa T., SHiraishi T., Ikemoto T., Lino M., et al. Native structure and arrangement of inositol-1,4,5-triphosphate receptor molecules in bovine cerebellar Purkinje cells as studied by quick-freeze deep-etch electron microscopy. The EMBO Journal 1996, 15:4844-4851.
28. Kuo A., Gulbis J.M., Antcliff J.F., Rahman T., Lowe E.D., Zimmer J., et al. Crystal structure of the potassium channel KirBac1.1 in the closed state. Science 2003, 300:1922-1926.
29. Lobo P.A., Van Petegem F. Crystal structures of the N-terminal domains of cardiac and skeletal muscle ryanodine receptors: Insights into disease mutations. Structure 2009, 17:1505-1514.
30. + channel. Science 2005, 309:897-903.
31. Ludtke S.J., Baker M.L., Chen D.H., Song J.L., Chuang D.T., Chiu W. De novo backbone trace of GroEL from single particle electron cryomicroscopy. Structure 2008, 16:441-448.
32. Ludtke S.J., Serysheva I.I., Hamilton S.L., Chiu W. The pore structure of the closed RyR1 channel. Structure (Cambridge) 2005, 13:1203-1211.
33. Maeda N., Niinobe M., Mikoshiba K. A cerebellar Purkinje cell marker P400 protein is an inositol 1,4,5-triphosphate (insP3) receptor protein. Purification and characterization of InsP3 receptor complex. The EMBO Journal 1990, 9:61-67.
34. Michikawa T., Hamanaka H., Otsu H., Yamamoto A., Miyawaki A., Furuichi T., et al. Transmembrane toplogy and sites of glycosylation of the inositol triphosphate receptor. The Journal of Biological Chemistry 1994, 269:9184-9189.
35. Mignery G.A., Newton C.L., Archer B.T., Sudhof T.C. Structure and expression of the rat inositol 1,4,5-trisphosphate receptor. The Journal of Biological Chemistry 1990, 265:12679-12685.
36. Mignery G.A., Sudhof T.C. The ligand binding site and transduction mechanism in the inositol- 1,4,5-triphosphate receptor. The EMBO Journal 1990, 9:3893-3898.
37. Mignery G.A., Sudhof T.C., Takei K., De Camilli P. Putative receptor for inositol 1,4,5-trisphosphate similar to ryanodine receptor. Nature 1989, 342:192-195.
38. 2+ channel: From discovery to new signaling concepts. Journal of Neurochemistry 2007, 102:1426-1446.
39. Miyawaki A., Furuichi T., Ryou Y., Yoshikawa S., Nakagawa T., Saitoh T., et al. Structure-function relationships of the mouse inositol 1,4,5-trisphosphate receptor. Proceedings of the National Academy of Sciences of the United States of America 1991, 88:4911-4915.
40. 2+ release analysed using region-specific monoclonal antibodies. The Biochemical Journal 1991, 277(Pt 1):125-131.
41. Nakagawa A., Miyazaki N., Taka J., Naitow H., Ogawa A., Fujimoto Z., et al. The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins. Structure 2003, 11:1227-1238.
42. Nakayama T., Hattori M., Uchida K., Nakamura T., Tateishi Y., Bannai H., et al. The regulatory domain of the inositol 1,4,5-trisphosphate receptor is necessary to keep the channel domain closed: Possible physiological significance of specific cleavage by caspase 3. The Biochemical Journal 2004, 377:299-307.
43. Orlova E.V., Serysheva I.I., van Heel M., Hamilton S.L., Chiu W. Two structural configurations of the skeletal muscle calcium release channel. Nature Structural Biology 1996, 3:547-552.
44. Ponting C.P. Novel repeats in ryanodine and IP3 receptors and protein O-mannosyltransferases. Trends in Biochemical Sciences 2000, 25:48-50.
45. Samso M., Feng W., Pessah I.N., Allen P.D. Coordinated movement of cytoplasmic and transmembrane domains of RyR1 upon gating. PLoS Biology 2009, 7:e85.
46. Samso M., Wagenknecht T., Allen P.D. Internal structure and visualization of transmembrane domains of the RyR1 calcium release channel by cryo-EM. Nature Structural and Molecular Biology 2005, 12:539-544.
47. Sato C., Hamada K., Ogura T., Miyazawa A., Iwasaki K., Hiroaki Y., et al. Inositol 1,4,5-trisphosphate receptor contains multiple cavities and L-shaped ligand-binding domains. Journal of Molecular Biology 2004, 336:155-164.
48. Schug Z.T., Joseph S.K. The role of the S4-S5 linker and C-terminal tail in inositol 1,4,5-trisphosphate receptor function. The Journal of Biological Chemistry 2006, 281:24431-24440.
49. Serysheva I.I., Bare D.J., Ludtke S.J., Kettlun C.S., Chiu W., Mignery G.A. Structure of the type 1 inositol 1,4,5-trisphosphate receptor revealed by electron cryomicroscopy. The Journal of Biological Chemistry 2003, 278:21319-21322.
50. Serysheva I.I., Chiu W., Ludtke S.J. Single-particle electron cryomicroscopy of the ion channels in the excitation-contraction coupling junction. Methods in Cell Biology 2007, 79:407-435.
51. Serysheva I.I., Ludtke S.J., Baker M.L., Cong Y., Topf M., Eramian D., et al. Subnanometer-resolution electron cryomicroscopy-based domain models for the cytoplasmic region of skeletal muscle RyR channel. Proceedings of the National Academy of Sciences of the United States of America 2008, 105:9610-9615.
52. 2+ and AMP-PCP. Biophysical Journal 1999, 77:1936-1944.
53. Srikanth S., Wang Z., Tu H., Nair S., Mathew M.K., Hasan G., et al. Functional properties of the Drosophila melanogaster inositol 1,4,5-trisphosphate receptor mutants. Biophysical Journal 2004, 86:3634-3646.
54. Stewart A., Grigorieff N. Noise bias in the refinement of structures derived from single particles. Ultramicroscopy 2004, 102:67-84.
55. Takei K., Mignery G.A., Mugnaini E., Sudhof T.C., De Camilli P. Inositol 1,4,5-trisphosphate receptor causes formation of ER cisternal stacks in transfected fibroblasts and in cerebellar Purkinje cells. Neuron 1994, 12:327-342.
56. + channel Kir2.2 at 3.1 å resolution. Science 2009, 326:1668-1674.
57. 3 receptors: The search for structure. Trends in Biochemical Sciences 2004, 29:210-219.
58. Uchida K., Miyauchi H., Furuichi T., Michikawa T., Mikoshiba K. Critical regions for activation gating of the inositol 1,4,5-trisphosphate receptor. The Journal of Biological Chemistry 2003, 278:16551-16560.
59. Welch W., Rheault S., West D.J., Williams A.J. A model of the putative pore region of the cardiac ryanodine receptor channel. Biophysical Journal 2004, 87:2335-2351.
60. 2+ -release channel tunnel: Structures and mechanisms involved in ion translocation in ryanodine receptor channels. Quarterly Reviews of Biophysics 2001, 34:61-104.
61. Yoshikawa F., Morita M., Monkawa T., Michikawa T., Furuichi T., Mikoshiba K. Mutational analysis of the ligand binding site of the inositol 1,4,5- trisphosphate receptor. The Journal of Biological Chemistry 1996, 271:18277-18284.
62. Yoshikawa S., Tanimura T., Miyawaki A., Nakamura M., Yuzaki M., Furuichi T., et al. Molecular cloning and characterization of the inositol 1,4,5-trisphosphate receptor in Drosophila melanogaster. The Journal of Biological Chemistry 1992, 267:16613-16619.
63. Yu X., Jin L., Zhou Z.H. 3.88 å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy. Nature 2008, 453:415-419.
64. Zhang J., Baker M.L., Schroder G.F., Douglas N.R., Reissmann S., Jakana J., et al. Mechanism of folding chamber closure in a group II chaperonin. Nature 2010, 463:379-383.
65. Zhang X., Settembre E., Xu C., Dormitzer P.R., Bellamy R., Harrison S.C., et al. Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction. Proceedings of the National Academy of Sciences of the United States of America 2008, 105:1867-1872.
66. Zhou Z.H., Baker M.L., Jiang W., Dougherty M., Jakana J., Dong G., et al. Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus. Nature Structural Biology 2001, 8:868-873.