Global comparison of gene expression profiles between intramuscular and subcutaneous adipocytes of neonatal landrace pig using microarray

Meat Science

Volumn 86, Issue 2, 2010, Pages 440-450

  Zhou, Guixuan ^a   Wang, Songbo ^a   Wang, Zhonggang ^a   Zhu, Xiaotong ^a   Shu, Gang ^a   Liao, Weiyi ^a   Yu, Kaifan ^a   Gao, Ping ^a   Xi, Qianyun ^a   Wang, Xiuqi ^a   Zhang, Yongliang ^a   Yuan, Li ^b   Jiang, Qingyan ^a  

^a SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

^b XIAMEN UNIVERSITY   (China)

Author keywords

Cell differentiation; Gene expression; Intramuscular adipocytes; Microarray; Subcutaneous adipocytes

Indexed keywords

ADIPOCYTES; CELL DIFFERENTIATION; CYTOSOLIC; EXPRESSED GENES; GENE EXPRESSION PROFILES; IN-VITRO; INTRAMUSCULAR ADIPOCYTES; LATE STAGE; LIPID MASS; LIPID METABOLISMS; PREADIPOCYTES; REAL-TIME PCR;

METABOLISM; PHYSIOLOGY; POLYMERASE CHAIN REACTION;

GENE EXPRESSION;

ADIPOCYTE; ADIPOSE TISSUE; ANIMAL; ARTICLE; COMPARATIVE STUDY; CYTOLOGY; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETICS; LIPID METABOLISM; MEAT; METABOLISM; METHODOLOGY; MICROARRAY ANALYSIS; NEWBORN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SKELETAL MUSCLE; STANDARD; SUBCUTANEOUS FAT; SWINE;

ADIPOCYTES; ADIPOSE TISSUE; ANIMALS; ANIMALS, NEWBORN; GENE EXPRESSION; GENE EXPRESSION PROFILING; LIPID METABOLISM; MEAT; MICROARRAY ANALYSIS; MUSCLE, SKELETAL; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SUBCUTANEOUS FAT; SWINE;

SUIDAE;

EID: 77955090273     PISSN: 03091740     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meatsci.2010.05.031     Document Type: Article

References (53)

1. Andersen C.L., Jensen J.L., Orntoft T.F. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Research 2004, 64:5245-5250.
2. Bowers R.R., Kim J.W., Otto T.C., Lane M.D. Stable stem cell commitment to the adipocyte lineage by inhibition of DNA methylation: Role of the BMP-4 gene. Proceedings of the National Academy of Sciences of the United States of America 2006, 103:13022-13027.
3. Bowers R.R., Lane M.D. A role for bone morphogenetic protein-4 in adipocyte development. Cell Cycle 2007, 6:385-389.
4. Byrne K.A., Wang Y.H., Lehnert S.A., Harper G.S., McWilliam S.M., Bruce H.L., et al. Gene expression profiling of muscle tissue in Brahman steers during nutritional restriction. Journal of Animal Science 2005, 83:1-12.
5. Carmichael J., Degraff W.G., Gazdar A.F., Minna J.D., Mitchell J.B. Evaluation of a tetrazolium-based semiautomated colorimetric assay-Assessment of chemosensitivity testing. Cancer Research 1987, 47:936-942.
6. Chmurzynska A. The multigene family of fatty acid-binding proteins (FABPs): Function, structure and polymorphism. Journal of Applied Genetics 2006, 47:39-48.
7. Fernandez X., Monin G., Talmant A., Mourot J., Lebret B. Influence of intramuscular fat content on the quality of pig meat-1. Composition of the lipid fraction and sensory characteristics of m. longissimus lumborum. Meat Science 1999, 53:59-65.
8. Fernandez X., Monin G., Talmant A., Mourot J., Lebret B. Influence of intramuscular fat content on the quality of pig meat-2. Consumer acceptability of m. longissimus lumborum. Meat Science 1999, 53:67-72.
9. Fielding B.A., Frayn K.N. Lipoprotein lipase and the disposition of dietary fatty acids. The British Journal of Nutrition 1998, 80:495-502.
10. Fortin A., Robertson W.M., Tong A.K.W. The eating quality of Canadian pork and its relationship with intramuscular fat. Meat Science 2005, 69:297-305.
11. Gardan D., Gondret F., Louveau I. Lipid metabolism and secretory function of porcine intramuscular adipocytes compared with subcutaneous and perirenal adipocytes. American Journal of Physiology. Endocrinology and Metabolism 2006, 291:E372-E380.
12. Gardan D., Louveau L., Gondret F. Adipocyte- and heart-type fatty acid binding proteins are both expressed in subcutaneous and intramuscular porcine (Sus scrofa) adipocytes. Comparative Biochemistry and Physiology. Part B: Biochemistry & Molecular Biology 2007, 148:14-19.
13. Goldschmidt R.C., Kimelberg H.K. Protein-analysis of mammalian-cells in monolayer-culture using the bicinchoninic assay. Analytical Biochemistry 1989, 177:41-45.
14. Gondret F., Guitton N., Guillerm-Regost C., Louveau I. Regional differences in porcine adipocytes isolated from skeletal muscle and adipose tissues as identified by a proteomic approach. Journal of Animal Science 2008, 86:2115-2125.
15. Hausman G.J., Barb C.R., Dean G. Patterns of gene expression in pig adipose tissue: Transforming growth factors, interferons, interleukins, and apolipoproteins. Journal of Animal Science 2007, 85:2445-2456.
16. Hausman G.J., Poulos S. Recruitment and differentiation of intramuscular preadipocytes in stromal-vascular cell cultures derived from neonatal pig semitendinosus muscles. Journal of Animal Science 2004, 82:429-437.
17. Hausman G.J., Poulos S.P. A method to establish co-cultures of myotubes and preadipocytes, from collagenase digested neonatal pig semitendinosus muscles. Journal of Animal Science 2005, 83:1010-1016.
18. Hausman G.J., Poulos S.P., Richardson R.L., Barb C.R., Andacht T., Kirk H.C., et al. Secreted proteins and genes in fetal and neonatal pig adipose tissue and stromal-vascular cells. Journal of Animal Science 2006, 84:1666-1681.
19. Joo S.T., Lee J.I., Ha Y.L., Park G.B. Effects of dietary conjugated linoleic acid on fatty acid composition, lipid oxidation, color, and water-holding capacity of pork loin. Journal of Animal Science 2002, 80:108-112.
20. Lee S.H., Park E.W., Cho Y.M., Kim S.K., Lee J.H., Jeon J.T., et al. Identification of differentially expressed genes related to intramuscular fat development in the early and late fattening stages of hanwoo steers. Journal of Biochemistry and Molecular Biology 2007, 40:757-764.
21. Lehnert S.A., Reverter A., Byrne K.A., Wang Y., Nattrass G.S., Hudson N.J., et al. Gene expression studies of developing bovine longissimus muscle from two different beef cattle breeds. BMC Developmental Biology 2007, 7.
22. Li M.Z., Li X.W., Zhu L., Teng X.K., Xiao H.S., Shuai S.R., et al. Differential expression analysis and regulatory network reconstruction for genes associated with muscle growth and adipose deposition in obese and lean pigs. Progress in Natural Science 2008, 18:387-399.
23. Lin C.S., Hsu C.W. Differentially transcribed genes in skeletal muscle of Duroc and Taoyuan pigs. Journal of Animal Science 2005, 83:2075-2086.
24. Liu W.H., Saint D.A. A new quantitative method of real time reverse transcription polymerase chain reaction assay based on simulation of polymerase chain reaction kinetics. Analytical Biochemistry 2002, 302:52-59.
25. McGowan M.W., Artiss J.D., Strandbergh D.R., Zak B. A peroxidase-coupled method for colorimetric determination of serum triglycerides. Clinical Chemistry 1983, 29:538-542.
26. Meadus W.J., MacInnis R., Dugan M.E.R. Prolonged dietary treatment with conjugated linoleic acid stimulates porcine muscle peroxisome proliferator activated receptor gamma and glutamine-fructose aminotransferase gene expression in vivo. Journal of Molecular Endocrinology 2002, 28:79-86.
27. Michal J.J., Zhang Z.W., Gaskins C.T., Jiang Z. The bovine fatty acid binding protein 4 gene is significantly associated with marbling and subcutaneous fat depth in Wagyu×Limousin F-2 crosses. Animal Genetics 2006, 37:400-402.
28. Moody D.E., Zou Z., McIntyre L. Cross-species hybridisation of pig RNA to human nylon microarrays. BMC Genomics 2002, 3.
29. Pfaffl M.W., Tichopad A., Prgomet C., Neuvians T.P. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Biotechnology Letters 2004, 26:509-515.
30. Poulos S.P., Hausman G.J. A comparison of thiazolidinedione-induced adipogenesis and myogenesis in stromal-vascular cells from subcutaneous adipose tissue or semitendinosus muscle of postnatal pigs. Journal of Animal Science 2006, 84:1076-1082.
31. Ramsay T.G. Porcine preadipocyte proliferation and differentiation: A role for leptin?. Journal of Animal Science 2005, 83:2066-2074.
32. Samulin J., Berget I., Lien S., Sundvold H. Differential gene expression of fatty acid binding proteins during porcine adipogenesis. Comparative Biochemistry and Physiology. Part B: Biochemistry & Molecular Biology 2008, 151:147-152.
33. Sanosaka M., Minashima T., Suzuki K., Watanabe K., Ohwada S., Hagino A., et al. A combination of octanoate and oleate promotes in vitro differentiation of porcine intramuscular adipocytes. Comparative Biochemistry and Physiology. Part B: Biochemistry & Molecular Biology 2008, 149:285-292.
34. Shu G., Jiang Q.Y., Zhu X.T., Zhang H.X., Gao P., Zhang Y.L., et al. Identification of porcine fatty acid translocase: High-level transcript in intramuscular fat. Journal of Animal Physiology and Animal Nutrition 2008, 92:562-568.
35. Smith S.B., Crouse J.D. Relative contribution of acetate, lactate and glucose to lipogenesis in bovine intramuscular and subcutaneous adipose-tissue. The Journal of Nutrition 1984, 114:792-800.
36. Sun D.Y., Zhu X.P., Qiao S.Y., Fan S.J., Li D.F. Effects of conjugated linoleic acid levels and feeding intervals on performance, carcass traits and fatty acid composition of finishing barrows. Archives of Animal Nutrition 2004, 58:277-286.
37. Taha M.F., Valojerdi M.R., Mowla S.J. Effect of bone morphogenetic protein-4 (BMP-4) on adipocyte differentiation from mouse embryonic stem cells. Anatomia Histologia Embryologia-Journal of Veterinary Medicine Series C 2006, 35:271-278.
38. Tan N.S., Shaw N.S., Vinckenbosch N., Liu P., Yasmin R., Desvergne B., et al. Selective cooperation between fatty acid binding proteins and peroxisome proliferator-activated receptors in regulating transcription. Molecular and Cellular Biology 2002, 22:5114-5127.
39. Tang Q.Q., Otto T.C., Lane M.D. Commitment of C3H10T1/2 pluripotent stem cells to the adipocyte lineage. Proceedings of the National Academy of Sciences of the United States of America 2004, 101:9607-9611.
40. Taniguchi M., Guan L.L., Basarab J.A., Dodson M.V., Moore S.S. Comparative analysis on gene expression profiles in cattle subcutaneous fat tissues. Comparative Biochemistry and Physiology D-Genomics & Proteomics 2008, 3:251-256.
41. Taniguchi M., Guan L.L., Zhang B., Dodson M.V., Okine E., Moore S.S. Adipogenesis of bovine perimuscular preadipocytes. Biochemical and Biophysical Research Communications 2008, 366:54-59.
42. Tchernof A., Belanger C., Morisset A.S., Richard C., Mailloux J., Laberge P., et al. Regional differences in adipose tissue metabolism in women-Minor effect of obesity and body fat distribution. Diabetes 2006, 55:1353-1360.
43. Tsai S., Mir B., Martin A.C., Estrada J.L., Bischoff S.R., Hsieh W.P., et al. Detection of transcriptional difference of porcine imprinted genes using different microarray platforms. BMC Genomics 2006, 7.
44. Tseng Y.H., Kokkotou E., Schulz T.J., Huang T.L., Winnay J.N., Taniguchi C.M., et al. New role of bone morphogenetic protein 7 in brown adipogenesis and energy expenditure. Nature 2008, 454:1000-U44.
45. Urs S., Smith C., Campbell B., Saxton A.M., Taylor J., Zhang B., et al. Gene expression profiling in human preadipocytes and adipocytes by microarray analysis. Journal of Nutrition 2004, 134:762-770.
46. van Laack R., Stevens S.G., Stalder K.J. The influence of ultimate pH and intramuscular fat content on pork tenderness and tenderization. Journal of Animal Science 2001, 79:392-397.
47. Vandesompele J., De Preter K., Pattyn F., Poppe B., Van Roy N., De Paepe A., et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology 2002, RESEARCH0034.
48. Wang Y.H., Bower N.I., Reverter A., Tan S.H., De Jager N., Wang R., et al. Gene expression patterns during intramuscular fat development in cattle. Journal of Animal Science 2009, 87:119-130.
49. Wang Y.H., Byrne K.A., Reverter A., Harper G.S., Taniguchi M., McWilliam S.M., et al. Transcriptional profiling of skeletal muscle tissue from two breeds of cattle. Mammalian Genome 2005, 16:201-210.
50. Weisiger R.A. Cytosolic fatty acid binding proteins catalyze two distinct steps in intracellular transport of their ligands. Molecular and Cellular Biochemistry 2002, 239:35-43.
51. Xiao Y.T., Xiang L.X., Shao J.Z. Bone morphogenetic protein. Biochemical and Biophysical Research Communications 2007, 362:550-553.
52. Zhang H.X., Zhu X.T., Shu G., Zhou G.X., Gao P., Gao S.J., et al. Differential mRNA expression profiles of porcine intramuscular preadipocytes compared with subcutaneous preadipocytes during differentiation. Scientia Agricultura Sinica 2008, 41:3760-3768. (Chinese).
53. Zhou X., Li D., Yin J.D., Ni J.J., Dong B., Zhang J.X., et al. CLA differently regulates adipogenesis in stromal vascular cells from porcine subcutaneous adipose and skeletal muscle. Journal of Lipid Research 2007, 48:1701-1709.