Elevating the perspective on human stress genomics

Psychoneuroendocrinology

Volumn 35, Issue 7, 2010, Pages 955-962

  Cole, Steve W ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Bioinformatics; Gene transcription; Genomics; Microarray; Stress

Indexed keywords

GLUCOCORTICOID; GLUCOCORTICOID RECEPTOR; MESSENGER RNA; TRANSCRIPTION FACTOR;

ACUTE STRESS; COPING BEHAVIOR; DNA POLYMORPHISM; FUNCTIONAL GENOMICS; GENE CONTROL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FUNCTION; GENETIC TRANSCRIPTION; HORMONE RESPONSE; HUMAN; HUMAN GENOME; HYPOTHALAMUS HYPOPHYSIS ADRENAL SYSTEM; LYMPHOCYTE SUBPOPULATION; MENTAL STRESS; POSTTRAUMATIC STRESS DISORDER; PRIORITY JOURNAL; REVIEW; SOCIAL ADAPTATION; SOCIAL BEHAVIOR; SOCIAL ENVIRONMENT; SOCIAL STRESS; TRANSCRIPTION REGULATION;

GENE EXPRESSION PROFILING; GENOMICS; HUMANS; POLYMORPHISM, GENETIC; SOCIAL ENVIRONMENT; STRESS, PSYCHOLOGICAL; TRANSCRIPTION, GENETIC;

EID: 77954952889     PISSN: 03064530     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.psyneuen.2010.06.008     Document Type: Review

References (52)

1. Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., Davis A.P., Dolinski K., Dwight S.S., Eppig J.T., Harris M.A., Hill D.P., Issel-Tarver L., Kasarskis A., Lewis S., Matese J.C., Richardson J.E., Ringwald M., Rubin G.M., Sherlock G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 2000, 25(1):25-29.
2. Beissbarth T., Speed T.P. GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 2004, 20(9):1464-1465.
3. Benjamini Y., Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B 1995, 57:289-300.
4. Benschop R.J., Rodrigues-Feuerhahn M., Schedlowski M. Catecholamine-induced leukocytosis: early observations, current research, and future directions. Brain Behav. Immun. 1996, 10(2):77-91.
5. Chen E., Miller G.E., Kobor M.S., Cole S.W. Maternal warmth buffers the effects of low early-life socioeconomic status on pro-inflammatory signaling in adulthood. Mol. Psychiatry 2010, (Epub ahead of print).
6. Chen E., Miller G.E., Walker H.A., Arevalo J.M., Sung C.Y., Cole S.W. Genome-wide transcriptional profiling linked to social class in asthma. Thorax 2009, 64(1):38-43. (Epub 2008 November 2010).
7. Cole S., Arevalo J., Takahashi R., Sloan E.K., Lutgendorf S., Sood A.K., Sheridan J.F., Seeman T. Computational identification of gene-social environment interaction at the human IL6 locus. Proc. Natl. Acad. Sci. U.S.A. 2010, 107(12):5681-5686.
8. Cole S.W. Social regulation of leukocyte homeostasis: the role of glucocorticoid sensitivity. Brain Behav. Immun. 2008, 22(7):1049-1055.
9. Cole S.W. Social regulation of human gene expression. Curr. Dir. Psychol. Sci. 2009, 18(3):132-137.
10. Cole S.W., Galic Z., Zack J.A. Controlling false-negative errors in microarray differential expression analysis: a PRIM approach. Bioinformatics 2003, 19(14):1808-1816.
11. Cole S.W., Hawkley L.C., Arevalo J.M., Sung C.Y., Rose R.M., Cacioppo J.T. Social regulation of gene expression in human leukocytes. Genome Biol. 2007, 8(R189):1-13.
12. Cole S.W., Mendoza S.P., Capitanio J.P. Social stress desensitizes lymphocytes to regulation by endogenous glucocorticoids: insights from in vivo cell trafficking dynamics in rhesus macaques. Psychosom. Med. 2009, 71(6):591-597. (Epub 2009 June 2024).
13. Cole S.W., Yan W., Galic Z., Arevalo J., Zack J.A. Expression-based monitoring of transcription factor activity: the TELiS database. Bioinformatics 2005, 21(6):803-810.
14. Eady J.J., Wortley G.M., Wormstone Y.M., Hughes J.C., Astley S.B., Foxall R.J., Doleman J.F., Elliott R.M. Variation in gene expression profiles of peripheral blood mononuclear cells from healthy volunteers. Physiol. Genomics 2005, 22(3):402-411. (Epub 2005 July 2012).
15. Feder A., Nestler E.J., Charney D.S. Psychobiology and molecular genetics of resilience. Nat. Rev. Neurosci. 2009, 10(6):446-457.
16. Gladkevich A., Kauffman H.F., Korf J. Lymphocytes as a neural probe: potential for studying psychiatric disorders. Prog. Neuropsychopharmacol. Biol. Psychiatry 2004, 28(3):559-576.
17. Irwin M.R., Wang M., Campomayor C.O., Collado-Hidalgo A., Cole S. Sleep deprivation and activation of morning levels of cellular and genomic markers of inflammation. Arch. Intern. Med. 2006, 166(16):1756-1762.
18. Irwin M.R., Wang M., Ribeiro D., Cho H.J., Olmstead R., Breen E.C., Martinez-Maza O., Cole S. Sleep loss activates cellular inflammatory signaling. Biol. Psychiatry 2008, 64(6):538-540. (Epub 2008 June 2017).
19. Karssen A.M., Her S., Li J.Z., Patel P.D., Meng F., Bunney W.E., Jones E.G., Watson S.J., Akil H., Myers R.M., Schatzberg A.F., Lyons D.M. Stress-induced changes in primate prefrontal profiles of gene expression. Mol. Psychiatry 2007, 12(12):1089-1102. (Epub 2007 September 1025).
20. Kawai T., Morita K., Masuda K., Nishida K., Shikishima M., Ohta M., Saito T., Rokutan K. Gene expression signature in peripheral blood cells from medical students exposed to chronic psychological stress. Biol. Psychol. 2007, 76(3):147-155. (Epub 2007 July 2031).
21. The Genetic Basis of Human Cancer 1998, 731. McGraw-Hill, New York. B. Vogelstein, B. Kinzler (Eds.).
22. Kinzler K.W., Vogelstein B. Cancer genes and the pathways they control. Nat. Med. 2004, 10(8):789-799.
23. Liew C.C., Ma J., Tang H.C., Zheng R., Dempsey A.A. The peripheral blood transcriptome dynamically reflects system wide biology: a potential diagnostic tool. J. Lab. Clin. Med. 2006, 147(3):126-132.
24. Lutgendorf S.K., Degeest K., Sung C.Y., Arevalo J.M., Penedo F., Lucci J., Goodheart M., Lubaroff D., Farley D.M., Sood A.K., Cole S.W. Depression, social support, and beta-adrenergic transcription control in human ovarian cancer. Brain Behav. Immun. 2009, 23(2):176-183.
25. Meaney M.J., Szyf M., Seckl J.R. Epigenetic mechanisms of perinatal programming of hypothalamic-pituitary-adrenal function and health. Trends Mol. Med. 2007, 13(7):269-277. (Epub 2007 June 2004).
26. Miller R.G. Beyond anova. basics of applied statistics 1986, Wiley, New York.
27. Miller A.H., Spencer R.L., hassett J., Kim C., Rhee R., Ciurea D., Dhabhar F., McEwen B., Stein M. Effects of selective type I and II adrenal steroid agonists on immune cell distribution. Endocrinology 1994, 135(5):1934-1944.
28. Miller G.E., Chen E., Fok A.K., Walker H., Lim A., Nicholls E.F., Cole S., Kobor M.S. Low early-life social class leaves a biological residue manifested by decreased glucocorticoid and increased proinflammatory signaling. Proc. Natl. Acad. Sci. U.S.A. 2009, 106(34):14716-14721. (Epub 12009 July 14714).
29. Miller G.E., Chen E., Sze J., Marin T., Arevalo J.M., Doll R., Ma R., Cole S.W. A functional genomic fingerprint of chronic stress in humans: blunted glucocorticoid and increased NF-kappaB signaling. Biol. Psychiatry 2008, 64(4):266-272. Epub 2008 Apr 2028.
30. Montminy M. Transcriptional regulation by cyclic AMP. Annu. Rev. Biochem. 1997, 66:807-822.
31. Morita K., Saito T., Ohta M., Ohmori T., Kawai K., Teshima-Kondo S., Rokutan K. Expression analysis of psychological stress-associated genes in peripheral blood leukocytes. Neurosci. Lett. 2005, 381(1-2):57-62. (Epub 2005 February 2016).
32. Nater U.M., Whistler T., Lonergan W., Mletzko T., Vernon S.D., Heim C. Impact of acute psychosocial stress on peripheral blood gene expression pathways in healthy men. Biol. Psychol. 2009, 82(2):125-132. (Epub 2009 July 2003).
33. Norris A.W., Kahn C.R. Analysis of gene expression in pathophysiological states: balancing false discovery and false negative rates. Proc. Natl. Acad. Sci. U.S.A. 2006, 103(3):649-653. (Epub 2006 January 2009).
34. Ohmori T., Morita K., Saito T., Ohta M., Ueno S., Rokutan K. Assessment of human stress and depression by DNA microarray analysis. J. Med. Invest. 2005, 52(Suppl.):266-271.
35. Pace T.W., Hu F., Miller A.H. Cytokine-effects on glucocorticoid receptor function: relevance to glucocorticoid resistance and the pathophysiology and treatment of major depression. Brain Behav. Immun. 2007, 21(1):9-19. (Epub 2006 October 2027).
36. Palmer C., Diehn M., Alizadeh A.A., Brown P.O. Cell-type specific gene expression profiles of leukocytes in human peripheral blood. BMC Genomics 2006, 7:115-130.
37. Pascual G., Glass C.K. Nuclear receptors versus inflammation: mechanisms of transrepression. Trends Endocrinol. Metab. 2006, 17(8):321-327. (Epub 2006 August 2030).
38. Radich J.P., Mao M., Stepaniants S., Biery M., Castle J., Ward T., Schimmack G., Kobayashi S., Carleton M., Lampe J., Linsley P.S. Individual-specific variation of gene expression in peripheral blood leukocytes. Genomics 2004, 83(6):980-988.
39. Richlin V.A., Arevalo J.M., Zack J.A., Cole S.W. Stress-induced enhancement of NF-kappaB DNA-binding in the peripheral blood leukocyte pool: effects of lymphocyte redistribution. Brain Behav. Immun. 2004, 18(3):231-237.
40. Rokutan K., Morita K., Masuda K., Tominaga K., Shikishima M., Teshima-Kondo S., Omori T., Sekiyama A. Gene expression profiling in peripheral blood leukocytes as a new approach for assessment of human stress response. J. Med. Invest. 2005, 52(3-4):137-144.
41. Sanders V.M., Kasprowicz D.J., Kohm A.P., Swanson M.A. Neurotransmitter receptors on lymphocytes and other lymphoid cells. Psychoneuroimmunology 2001, 161-196. Academic Press, New York. 3rd ed. R. Ader, D. Felten, N. Cohen (Eds.).
42. Sapolsky R.M. Why zebras don't get ulcers: A guide to stress, stress-related disease and coping 1994, Freeman, New York.
43. Segman R.H., Shefi N., Goltser-Dubner T., Friedman N., Kaminski N., Shalev A.Y. Peripheral blood mononuclear cell gene expression profiles identify emergent post-traumatic stress disorder among trauma survivors. Mol. Psychiatry 2005, 10(5). pp. 500-513, 425.
44. Sloan E.K., Capitanio J.P., Tarara R.P., Mendoza S.P., Mason W.A., Cole S.W. Social stress enhances sympathetic innervation of primate lymph nodes: mechanisms and implications for viral pathogenesis. J. Neurosci. 2007, 27(33):8857-8865.
45. Smale S.T. Core promoters: active contributors to combinatorial gene regulation. Genes Dev. 2001, 15(19):2503-2508.
46. Wang J.-C., Derynck M.K., Nonaka D.F., Khodabakhsh D.B., Haqq C., Yamamoto K.R. Chromatin immunoprecipitation (ChIP) scanning identifies primary glucocorticoid receptor target genes. Proc. Natl. Acad. Sci. U.S.A. 2004, 101(44):15603-15608.
47. Weaver I.C., Meaney M.J., Szyf M. Maternal care effects on the hippocampal transcriptome and anxiety-mediated behaviors in the offspring that are reversible in adulthood. Proc. Natl. Acad. Sci. U.S.A. 2006, 103(9):3480-3485. (Epub 2006 February 3416).
48. Weiner H. Perturbing the Organism: The Biology of Stressful Experience 1992, University of Chicago Press, Chicago.
49. Whitney A.R., Diehn M., Popper S.J., Alizadeh A.A., Boldrick J., Relman D.A., Brown P.O. Individuality and variation in gene expression patterns in human blood. Proc. Natl. Acad. Sci. U.S.A. 2003, 100(4):1896-1901.
50. Yamamoto K.R. Steroid receptor regulated transcription of specific genes and gene networks. Annu. Rev. Genet. 1985, 19:209-252.
51. Zhang X., Odom D.T., Koo S.H., Conkright M.D., Canettieri G., Best J., Chen H., Jenner R., Herbolsheimer E., Jacobsen E., Kadam S., Ecker J.R., Emerson B., Hogenesch J.B., Unterman T., Young R.A., Montminy M. Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues. Proc. Natl. Acad. Sci. U.S.A. 2005, 102(12):4459-4464. (Epub 2005 March 4457).
52. Zieker D., Fehrenbach E., Dietzsch J., Fliegner J., Waidmann M., Nieselt K., Gebicke-Haerter P., Spanagel R., Simon P., Niess A.M., Northoff H. cDNA microarray analysis reveals novel candidate genes expressed in human peripheral blood following exhaustive exercise. Physiol. Genomics 2005, 23(3):287-294. Epub 2005 Aug 2023.