Distribution of SDF1-3'A polymorphisms in three different ethnic groups from Brazil

Brazilian Journal of Infectious Diseases

Volumn 14, Issue 2, 2010, Pages 197-200

  Grimaldi, Rogerio ^a,b   Acosta, A X ^a,c   Machado, T M B ^a   Bomfim, T F ^a   Galvao Castro B ^a,b  

^a INSTITUTO OSWALDO CRUZ   (Brazil)

^b ESCOLA BAHIANA DE MEDICINA E SAÚDE PÚBLICA   (Brazil)

^c FEDERAL UNIVERSITY OF BAHIA   (Brazil)

Author keywords

Brazilian population; HIV 1 co receptor; SDF1 3'A polymorphism

Indexed keywords

BIOLOGICAL MARKER; STROMAL CELL DERIVED FACTOR 1; GENETIC MARKER;

ACQUIRED IMMUNE DEFICIENCY SYNDROME; ADULT; ARTICLE; ASIAN; BLOOD DONOR; BRAZIL; CAUCASIAN; CONTROLLED STUDY; DISEASE COURSE; ETHNIC DIFFERENCE; ETHNIC GROUP; FEMALE; GENE FREQUENCY; GENE MUTATION; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOTYPE; HUMAN; MALE; NEGRO; POPULATION GENETICS; ASIAN CONTINENTAL ANCESTRY GROUP; BLACK PERSON; ETHNOLOGY; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MUTATION; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

AFRICAN CONTINENTAL ANCESTRY GROUP; ASIAN CONTINENTAL ANCESTRY GROUP; BRAZIL; CHEMOKINE CXCL12; DISEASE PROGRESSION; EUROPEAN CONTINENTAL ANCESTRY GROUP; GENE FREQUENCY; GENETIC MARKERS; GENOTYPE; HIV INFECTIONS; HUMANS; MUTATION; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH;

EID: 77954810782     PISSN: 14138670     EISSN: None     Source Type: Journal    
DOI: 10.1590/s1413-86702010000200017     Document Type: Article

References (25)

1. Deng H, Liu R, Ellmeier W et al. Identification of a major coreceptor for primary isolates of HIV-1. Nature 1996; 381:661-66.
2. Mummidi S, Ahuja SS, Gonzalez E et al. Genealogy of the CCR5 locus and chemokine system gene variants associated with altered rates of HIV-1 disease progression.Nat.Med.1998; 4(7):786-93.
3. Berger EA, Murphy PM, Farber JM. Chemokine receptors as HIV-1 coreceptors: roles in viral entry, tropism, and disease. Annu. Rev. Immunol. 1999; 17:657-700.
4. Dragic T, Litwin V, Allaway GP et al. HIV-1 entry into CD4+cells is mediated by the chemokine receptor CC-CKR-5. Nature 1996; 381(6584):667-73.
5. Grimaldi R, Shindo N, Acosta X et al. Prevalence of the CCR5Delta32 mutation in Brazilian populations and cell susceptibility to HIV-1 infection. Hum Genet. 2002; Jul; 111(1):102-4.
6. Liu H, Hwangbo Y, HolteS et al. Analysis of genetic polymorphisms in CCR5, CCR2, stromal cell-derived factor-1, RANTES, and dendritic cell-specifi c intercellular adhesion molecule-3-grabbing nonintegrin in seronegative individuals repeatedly exposed to HIV-1. J Infect Dis. 2004; Sep 15; 190(6):1055-8. Epub 2004 Aug 2.
7. Modi WS, Scott K, Goedert JJ et al. Haplotype analysis of the SDF-1 (CXCL12) gene in a longitudinal HIV-1/AIDS cohort study. Genes Immun. 2005; Dec; 6(8):691-8.
8. Sei S, Boler AM, Nguyen GT et al. Protective effect of CCR5 delta 32 heterozygosity is restricted by SDF-1 genotype in children with HIV-1 infection. AIDS. 2001; Jul 27; 15(11):1343-52.
9. Winkler C, Modi W, Smith MW et al. Genetic restriction of AIDS pathogenesis by an SDF-1 chemokine gene variant. ALIVE Study, Hemophilia Growth and Development Study (HGDS), Multicenter AIDS Cohort Study (MACS), Multicenter Hemophilia Cohort Study (MHCS), San Francisco City Cohort (SFCC). Science. 1998; Jan 16; 279(5349):389-93.
10. Dezzutti CS, Guenthner PC, Green TA, Cohen OJ, Spira TJ, Lal RB. Stromal-derived factor-1 chemokine gene variant is associated with the delay of HIV-1 disease progression in two longitudinal cohorts. AIDS. 2000; May 5; 14(7):894-6.
11. Cavalli-Sforza LL, Feldman MW. The application of molecular genetic approaches to the study of human evolution. Nat Genet. 2003; Mar; 33 Suppl:266-75.
12. Bamshad M, Wooding S, Salisbury BA, Stephens JC. Deconstructing the relationship between genetics and race. Nat Rev Genet. 2004; Aug; 5(8):598-609.
13. Rosenberg NA, Mahajan S, Ramachandran S, Zhao C, Pritchard JK, Feldman MW. Clines, clusters, and the effect of study design on the inference of human population structure. PLoS Genet. 2005; Dec;1(6):e70. Epub 2005 Dec 9.
14. IBGE-Instituto Brasileiro de Geografia e Estatística 2000. Pesquisa Nacional de Amostragem por Domicilio - Censo. http://www.ibge.gov.br
15. Azevedo ES, Fortuna CMM, Silva KMC. Spread and diversity of human population in Bahia, Brazil. Hum. Biol. 1982; 54:329341.
16. Dourado I, Barreto ML, Teixeira MG, Galvao-Castro B. HTLV-I in the general population of a Brazilian city with the highest seroprevalence. AIDS. Res.Hum.Retrov. 2001; 17(S1) P009.
17. Smith MW, Carrington M, Winkler C et al. CCR2 chem-okine receptor and AIDS progression.Nat Med. 1997; Oct; 3(10):1052-3.
18. van Rij RP, Broersen S, Goudsmit J, Coutinho RA, Schuitemaker H. The role of a stromal cell-derived factor-1 chemokine gene variant in the clinical course of HIV-1 infection. AIDS. 1998; Jun 18; 12(9):F85-90.
19. Vidal F, Peraire J, Domingo P et al. Chemokines and Long-Term Nonprogressor Study Group. Lack of association of SDF-1 3A variant allele with long-term nonprogressive HIV-1 infection is extended beyond 16 years.J Acquir Immune Defic Syndr. 2005; Nov 1; 40(3):276-9.
20. Watanabe MA, de Oliveira Cavassin GG, Orellana MD et al. SDF-1 gene polymorphisms and syncytia induction in Brazilian HIV-1 infected individuals. Microb. Pathog. 2003; Jul; 35(1):31-4.
21. De Pinho Lott Carvalhaes FA, Cardoso GL, Hamoy IG, Liu YT, Guerreiro JF. Distribution of CCR5-delta32, CCR2-64I, and SDF1-3A mutations in populations from the Brazilian Amazon region Hum Biol. 2004; Aug; 76(4):643-6.
22. Silva WA Jr, Bonatto SL, Holanda AJ et al. Mitochondrial genome diversity of Native Americans supports a single early entry of founder populations into America. Am J Hum Genet. 2002; 71(1):187-92.
23. Mousinho-Ribeiro RC, Pante-de-Sousa G, Melo dos Santos EJ, Guerreiro JF. Genetic relationships among native americans based on beta-globin gene cluster haplotype frequencies. Genet. Mol. Biol. 2003; 26, 3, 229-234.
24. Wang S, Lewis CM Jr, Jakobsson M, Ramachandran S, Ray N. Genetic Variation and Population Structure in Native Americans. PLoS Genet. 2007; 3(11):e185.
25. Zago MA, Silva Júnior WA, Tavella MH, Santos SE, Guerreiro JF, Figueiredo MS. Interpopulational and intrapopulational genetic diversity of Amerindians as revealed by six variable number of tandem repeats. Hum Hered. 1996; Sep-Oct; 46(5):274-89.