Interpopulational and Intrapopulational Genetic Diversity of Amerindians as Revealed by Six Variable Number of Tandem Repeats

Human Heredity

Volumn 46, Issue 5, 1996, Pages 274-289

  Zago, Marco A ^a   Silva, Wilson A ^b   Tavella, Marli H ^a   Santos, Sidney E B ^c   Guerreiro, João F ^c   Figueiredo, Mauro S ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b FEDERAL UNIVERSITY OF PARÁ   (Brazil)

^c University of Para   (Brazil)

Author keywords

Brazilian Blacks; DNA polymorhisms; Genetic diversity; Japanese; South American Indians; VNTR

Indexed keywords

APOLIPOPROTEIN B; VON WILLEBRAND FACTOR;

AMERICAN INDIAN; ARTICLE; BIODIVERSITY; BRAZIL; DNA POLYMORPHISM; GENE FREQUENCY; HETEROZYGOSITY; HUMAN; HUMAN CELL; NORMAL HUMAN; POPULATION GENETICS; VARIABLE NUMBER OF TANDEM REPEAT;

EID: 0029796679     PISSN: 00015652     EISSN: 14230062     Source Type: Journal    
DOI: 10.1159/000154364     Document Type: Article

References (44)

1. Jeffreys AJ. Wilson V. Thein SL: Individual-specific fingerprints of human DNA. Nature 1985:316:76-79.
2. Nakamura Y, Lcppcrt M, O'Connell P, Wolff R, Holm T, Culver M, Marlin C, Fujimoto E, Hoff M, Kundin E, White R: Varible number of tandem repeat markers for human gene mapping. Science 1967;235:1616-1622.
3. Balazs I: Population genetics of 14 ethnic groups using phenotypic data from VNTR loci; in Pena SDJ. Cha-krabortv R. Epplcn JT. Jeffreys AJ (eds): DNA Fingerprinting: State of the Science. Basel. Birkhäuser. 1993, pp 193-210.
4. Balazs I. Baird M. Clyne M. Meade E: Human population genetic studies of five hypervariable DNA loci. Am J Hum Genet 1992:44:182-190.
5. Balazs I. Ncuwcilcr J. Gunn P. Kid J. Kid KK. Kuhl J. Mingjun L: Human population genetic studies using hypcrvariable loci. I. Analysis of Assamese. Australian. Cambodian, Caucasian, Chinese and Melanesian Populations. Genetics 1992:131: 191-198.
6. Deka R. DeCroo S. Jin L. McGarvey ST. Rothhammcr F. Ferrell RE. Chakrabortv R: Population genetic characteristics of the D1S80 locus in seven human populations. Hum Genet 1994:94:252-258.
7. Dcka R. Chakraborty R. DeCroo S. Rothhammcr F. Barton SA. Ferrell RE: Characteristics of polymorphism at a VNTR locus 3' to the apolipoprotein B gene in five human populations. Am J Hum Genet 1992;51:1325-1333.
8. Evans AE, Zhang W, Moreel JFR, Bard JM, Ricard S, Poirier O, Tirct L, Fruchart JC, Cambien F: Polymorphisms of the apolipoprotein B and E genes and their relationship to plasma lipid variables in healthy Chinese. Hum Genet 1993:92:191-197.
9. Flint J, Boyce AJ, Martinson JJ, Clegg JB: Population bottlenecks in Polynesia revealed by minisatellites. Hum Genet 1989:83:257-263.
10. Gomolka M. Hundriescr J. Number P. Roewer I. Epplcn JT. Epplen C: Selected di- and tetranucleotide microsatellites form chromosomes 7, 12, 14 and Y in various Eurasian populations. Hum Genet 1994:93: 592-596.
11. Goodeve AC, Chuansumrit A, Sasa-nakul W, Isarangkura P, Preston FE, Peake IR: A comparison of the al-leleic frequencies of ten DNA polymorphisms associated with factor VIII and factor IX genes in Thai and Western European populations. Blood Coagul Fibrinolysis 1994:5: 29-35.
12. Hixson JE, Powers PK, Mc Mahan CA: The human apolipoprotein B 3' hypcrvariable region: Detection of eight new alleles and comparisons of allele frequencies in Blacks and Whites. Hum Genet 1993:91:475-479.
13. Novelli G. Spinella A. Gcnnarelli M. Mingarelli R. Dallapiccola B: Analysis of ApoB, HLADQ alpha, and DIS80 polymorphisms in the Italian population using the polymerase chain reaction. Am J Hum Biol 1992;4:381-386.
14. Sajantila A, Budowle B, Ström M, Johnsson V, Lukka M, Pcltonen L, Ehnholm C: PCR amplification of alleles at the D1S80 locus: Comparison of a Finnish and a North American Caucasian population sample, and forensic casework evaluation. Am J Hum Genet 1992:50:816-825.
15. Sugiyama E, Honda K, Katsuyama Y, Uchivama S, Tsuchikane A, Ota M, Fukushima H: Allele frequency distribution of the D1S80 (pMCTl 18) locus polymorphism in the Japanese population by the polymerase chain reaction. Int J Legal Med 1993;106:111-114.
16. Wall WJ, Williamson R, Petrou M, Papaioannou D, Parkin BH: Variation of short tandem repeats within and between populations. Hum Mol Genet 1993;2:1023-1029.
17. Ginthcr C, Corach D, Penacino GA, Rev JA, Camese FR, Hutz MM, Anderson A, Just J, Salzano FM, King M-C: Genetic variation among the Mapuchc Indians from the Patagonian region of Argentina: Mitochondrial DNA sequence variation and allele frequencies of several nuclear genes: in Pena SDJ. Chakraborty R. Epplcn JT. Jeffreys AJ (eds): DNA Fingerprinting: Slate of the Science. Basel. Birkhäuser, 1993. pp 211-219.
18. Kidd JR. Black FL. Weiss KM. Balazs I. Kidd KK: Studies of three Amerindian populations using nuclear DNA polymorphisms. Hum Biol 1991:63:775-794.
19. Sambrook J, Fritsh EF, Maniatis T: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor. Laboratory Press. 1989.
20. Kasai K, Nakamura Y, White R: Amplification of a variable number of tandem repeats (VNTR) locus (pMTOI8) by the polymerase chain reaction and its application to forensic science. J Forens Sci 1990: 35:1196-1200.
21. Boerwinkle E, Xiong W, Fourest E, Chan L: Rapid typing of tandemlv repeated hypervariable loci by the polymerase chain reaction: Application to the apolipoprotein B 3' hy-pcrvariablc region. Proc Natl Acad Sci USA 1989:86:212-216.
22. Horn GT. McClalchey AI. Richards B. MacDonald ME. Gusclla JF: Detection by PCR of a VNTR polymorphism at D4S43. Nucleic Acids Res 1991:19:4772.
23. Peake IB. Bowen D. Bignell P. Lin-dcll MB. Sadler JE. Standen G. Bloom AL: Family studies and prenatal diagnosis in severe von Wille-brand disease by polymerase chain reaction amplification of variable number of tandem repeat region of the von Willcbrand factor gene. Blood 1990:76:555-561.
24. Richards B. Heiiig R. Oberlc I. Stor-johann L. Horn GT: Rapid PCR analysis of the St 14 (DXS52) VNTR. Nucleic Acids Res 1991;19: 1944.
25. Roewer L. Arnemann J. Spurr NK. Grzeschik K-H. Epplcn JT: Simple repeat sequences on the human Y chromosome are equally polymorphic as their autosomal counterparts. Hum Genet 1992:89:389-394.
26. Ludwig EH, Friedl W, McCarthy BJ: High resolution analysis of a hypervariable region in the human apolipoprotein B gene. Am J Hum Genetics 1989:45:458-464.
27. Mancuso DJ, Tuley FA, Westfield LA, Worrall NK, Shelton-Inlocs BB, Sorace JM, Alevy YG, Sadler JE: Structure of the gene for human von Willebrand factor. J Biol Chem 1989;264:19514-19527.
28. Nei M: Molecular Evolutionary Genetics. New York, Columbia University Press. 1987.
29. Nei M: Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 1973:70:3321-3323.
30. Livshits G. Nei M: Relationships between intrapopulational and in-tcrpopulational genetic diversity in man. Ann Hum Biol 1990:17:501-513.
31. Ota T: DISPAN: Genetic distance and phvlogcntic analysis. University Park. Institute of Molecular Genetics, Pennsylvania State University, 1993.
32. Chakrabortv R: Sample size requirements for addressing the population genetic issue of forensic use of DNA typing. Hum Biol 1992:64:141-159.
33. Ewcns WJ: The sampling theory of selectively neutral alleles. Theor Popul Biol 1972;3:87-112.
34. Renges H-H. Peacock R. Dunning AM. Talmud P. Humphries SE: Genetic relationship between the 3'-VNTR and diallelic apolipoprotein B gene polymorphisms: Haplotype analysis in individuals of European and South Asian origin. Ann Hum Genet 1992;56:11-33.
35. Cumming AM, Armstrong JG, Pen-dry K, Burn AM, Wcnslcy RT: Polymerase chain reaction amplification of two polymorphic simple repeal sequences within the von Willebrand factor gene: Application to family studies in von Willebrand disease. Hum Genet 1992:89:194-198.
36. Silva WA Jr., Figueiredo MS: Analysis of factor VIII gene polymorphisms in Brazilian Blacks reveals further differences in the Black population. Hum llcrcd 1994:44:252-260.
37. Santos FR, Pena SDJ, Epplcn JT: Genetic and population study of a Y-linkcd tetranuclcotide repeat DNA polymorphism with a simple non-isotopic technique. Hum Genet 1993:90:655-656.
38. Müller S. Gomolka M. Walter H: The Y-specific SSLP of the locus DYS19 in four different European samples. Hum Hered 1994:44:298-300.
39. Zago MA, Santos EJM, Clegg JB, Guerreiro JF, Martinson JJ, Norwich J, Figueiredo MS: a-Globin gene haplotypcs in South American Indians. Hum Biol 1995:67:535-546.
40. Salzano FM. Callegari-Jacqucs SM: South American Indians. A Case Study in Evolution. Oxford. Clarendon Press. 1988.
41. Figueiredo MS, Bowen DJ, Silva WA Jr., Zago MA: Factor IX gene haplotypcs in Brazilian Blacks and characterization of unusual Ddc 1 alleles. Br J Haematol 1994;87:789-796.
42. s haplotype predominates among Brazilian Blacks. Am J PhysAnthrop 1992:88:295-298.
43. Roewer L. Nagy M. Schmidt P. Epplen JT. Herzog-Schröder G: Microsatellite and HLA class II oligonucleotide typing in a population of Yanomami Indians: in Pena SDJ, Chakrabortv R. Epplen JT. Jeffreys AJ (cds): DNA Fingerprinting: State of the Science. Basel. Birkhäuser. 1993, pp 221-230.
44. Bowcock AM, Ruiz-Linares A, Tomfohrdc J, Minch E, Kidd JR, Cavalli-Sforza LL: High resolution of human evolutionary trees with polymorphic microsatcllitcs. Nature 1994:368:455-457.