Mechanism of tomato bacterial wilt suppression in soil amended with lysine

Microbes and Environments

Volumn 25, Issue 2, 2010, Pages 83-94

  Posas, Marylene Bagarinao ^a   Toyota, Koki ^a  

^a TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

Author keywords

Canonical correspondence analysis (CCA); Denaturing gradient gel electrophoresis (DGGE); Induced systemic resistance; Microbial activity; Survival

Indexed keywords

LYSINE; OXIDOREDUCTASE; PLANT DNA; RIBOSOME DNA; RNA 16S; RNA 18S; SERINE;

ARTICLE; CHEMISTRY; CLUSTER ANALYSIS; DNA SEQUENCE; DRUG EFFECT; FRUIT; GENETICS; GROWTH, DEVELOPMENT AND AGING; IMMUNOLOGY; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PHYLOGENY; PHYSIOLOGY; PLANT DISEASE; PLANT IMMUNITY; PLANT ROOT; POLYMERASE CHAIN REACTION; RALSTONIA SOLANACEARUM; RHIZOSPHERE; SOIL; TIME; TOMATO;

BASE SEQUENCE; CLUSTER ANALYSIS; DNA, PLANT; DNA, RIBOSOMAL; FRUIT; LYCOPERSICON ESCULENTUM; LYSINE; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PHYLOGENY; PLANT DISEASES; PLANT IMMUNITY; PLANT ROOTS; POLYMERASE CHAIN REACTION; RALSTONIA SOLANACEARUM; RHIZOSPHERE; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 18S; SEQUENCE ANALYSIS, DNA; SERINE; SOIL; SOIL MICROBIOLOGY; TIME FACTORS;

BACTERIA (MICROORGANISMS); LYCOPERSICON ESCULENTUM; RALSTONIA SOLANACEARUM;

EID: 77954554099     PISSN: 13426311     EISSN: 13426311     Source Type: Journal    
DOI: 10.1264/jsme2.ME09171     Document Type: Article

References (50)

1. Abbasi, P.A., G. Lazarovits, and K.L. Conn. 2008. Enhancing biological control of soilborne plant disease by organic soil amendments, p. 319-344. In E. Ait Barka and C. Clément (ed.), Plant Microbe Interactions. Trivandrum, Kerala.
2. Aliye, N., C. Finisa, and Y. Hiskias. 2008. Evaluation of rhizosphere bacterial antagonists for their potential to bioprotect potato (Solanum tuberosum) against bacterial wilt (Ralstonia solanacearum). Biol. Control 47:282-288.
3. Arwiyanto, T., M. Goto, S. Tsuyumu, and Y. Takikawa. 1994. Biological control of bacterial wilt of tomato by an avirulent strain of Pseudomonas solanacearum isolated from Trelitzia reginae. Ann. Phytopathol. Soc. Jpn. 60:421-430.
4. Das, M., T.V. Royer, and L.G. Leff. 2007. Diversity of fungi, bacteria, and actinomycetes on leaves decomposing in a stream. Appl.Environ. Microbiol. 73:756-767.
5. Davis, R.F., P.A. Backman, R. Rodriguez-Kabana, and N. Kokalis-Burelle. 1992. Biological control of apple fruit diseases by Chaetomium globosum formulations containing cellulose. Biol. Control 2:118-123.
6. Diab, H.G., S. Hu, and D.M. Benson. 2003. Suppression in Rhizoctonia solani on impatiens by enhanced microbial activity in composted swine waste-amended potting mixes. Phytopathology 93:1115-1123.
7. Duffy, B.K., and G. Défago. 1997. Zinc improves biocontrol of Fusarium crown and root rot of tomato by Pseudomonas fluorescens and represses the production of pathogen metabolites inhibitory to bacterial antibiotic biosynthesis. Phytopathology 87:1250-1257.
8. Fujino, C., S. Wada, T. Konoike, K. Toyota, Y. Suga, and J. Ikeda. 2008. Effect of different organic amendments on the resistance and resilience of the organic matter decomposing ability of soil and the role of aggregated soil structure. Soil Sci. Plant Nutr. 54:534-542.
9. Fukui, R. 2003. Suppression of soilborne plant pathogens through community evolution of soil microorganisms. Microbes Environ. 18:1-9.
10. Garbeva, P., J.A. van Veen, and J.D. van Elsas. 2004. Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes. FEMS Microbiol. Ecol. 47:51-64.
11. Gava, C.A.T., J.C. Pereira, M.C.P. Neves, and M.D.C. Fernandes. 2002. Selection of Streptomycetes isolates for the control of Ralstonia solanacearum in tomato plants. Pesq. Agropec. Bras. 37:1373-1380.
12. Haas, D., and G. Défago. 2005. Biological control of soil-borne pathogens by fluorescent pseudomonads. Nat. Rev. Microbiol. 3:307-319.
13. Hayward, A.C. 1991. Biology and epidemiology of bacterial wilt caused by Pseudomonas solanacearum. Ann. Rev. Phytopathol. 29:65-87.
14. Hoitink, H.A.J., M.J. Boehm, and Y. Hadar. 1993. Mechanisms of suppression of soilborne plant pathogens in compost amended substrates, p. 601-621. In H.A.J. Hoitink, and H.M. Keener (ed.), Science and Engineering of Composting: Design, Environmental, Microbiological and Utilization Aspects. Renaissance Publications, Worthington.
15. Hoitink, H., and M. Boehm. 1999. Biocontrol within the context of soil microbial communities: a substrate-dependent phenomenon. Ann. Rev. Phytopathol. 37:427-446.
16. Ishikawa, R., K. Shirouzo, T. Nakashita, T. Teraoka, and T. Arie. 2007. Control efficacy of validamycin A against Fusarium wilt correlated with severity of phytotoxic necrosis formed on tomato tissues. J. Pestic. Sci. 32:83-88.
17. Islam, T.M.D., and K. Toyota. 2004. Suppression of bacterial wilt of tomato by Ralstonia solanacearum by incorporation of composts in soil and possible mechanisms. Microbes Environ. 19:53-60.
18. Janisiewicz, W.J., and B. Bors. 1995. Development of a microbial community of bacterial and yeast antagonists to control wound-invading postharvest pathogens of fruits. Appl. Environ. Microbiol. 61:3261-3267.
19. Kay, E., F. Bertolla, T.M. Vogel, and P. Simonet. 2002. Opportunistic colonization of Ralstonia solanacearum infected plants by Acinote-bacter sp. and its natural competence development. Microb. Ecol. 43:291-297.
20. Kistner, T., G. Nitz, and W.H. Schnitzler. 2004. Adding olive mill waste water to hydroponic nutrient solutions: a potential agent against microbial diseases. Acta Hort. 659:315-321.
21. Kotsou, M., I. Mari, K. Lasaridi, I. Chatzipavlidis, C. Balis, and K. Adamantini. 2004. The effect of olive oil mill wastewater (OMW) on soil microbial communities and suppressiveness against Rhizoctonia solani. Appl. Soil Ecol. 26:113-121.
22. Lazarovits, G. 2001. Management of soil-borne plant pathogens with organic soil amendments: a disease control strategy salvaged from the past. Can. J. Plant Pathol. 23:1-7.
23. Lazarovits, G., K.L. Conn, P.A. Abbasi, and M. Tenuta. 2005. Understanding the mode of action of organic soil amendments provides the way for improved management of soilborne plant pathogens. Acta Hort. 698:215-225.
24. Lemessa, F., and W. Zeller. 2007. Screening rhizobacteria for biological control of Ralstonia solanacearum in Ethiopia. Biol. Control 42:336-344.
25. Lugtenberg, B.J.J., and L.C. Dekkers. 1999. What makes Pseudomonas bacteria rhizosphere competent? Environ. Microbiol. 1:9-13.
26. May, L.A., B. Smiley, and M.G. Schmidt. 2001. Comparative denaturing gradient gel electrophoresis of fungal communities associated with whole plant corn silage. Can. J. Microbiol. 47:829-841.
27. Mazzola, M. 2002. Mechanisms of natural soil suppressiveness to soilborne diseases. Antonie van Leeuwenhoek 81:557-564.
28. Nion, Y.A., and K. Toyota. 2008. Suppression of bacterial wilt and Fusarium wilt by Burkholderia nodosa strain isolated from Kalimantan soils, Indonesia. Microbes Environ. 23:134-141.
29. Nishijima, T., K. Toyota, and M. Mochizuki. 2005. Predominant culturable Bacillus species in Japanese arable soils and their potential as biocontrol agents. Microbes Environ. 20:61-68.
30. Notz, R., M. Maurhofer, H. Dubach, D. Haas, and G. Defago. 2002. Fusaric acid-producing strains of Fusarium oxysporum alter 2,4-diacetylphloroglucinol biosynthetic gene expression in Pseudomonas fluorescens CHA0 in vitro and rhizosphere of wheat. Appl. Environ. Microbiol. 68:2229-2235.
31. Olivier, A.R., Y. Uda, S.W. Bang, H. Honjo, M. Fukami, and R. Fukui. 2006. Dried residues of specific cruciferous plants incorporated into soil can suppress the growth of Ralstonia solanacearum, independently of glucosinolate content of the residues. Microbes Environ. 21:216-226.
32. Oros-Sichler, M., N.C.M. Gomes, G. Neuber, and K. Smalla. 2006. A new seminested PCR protocol to amplify large 18S rRNA gene fragments for PCR-DGGE analysis of soil fungal communities. J. Microbiol. Methods 65:63-75.
33. Posas, M.B., K. Toyota, and T.M.D. Islam. 2007. Inhibition of bacterial wilt of tomato caused by Ralstonia solanacearum by sugars and amino acids. Microbes Environ. 22:290-296.
34. Saddler, G.S. 2005. Management of bacterial wilt disease, p. 121-132. In C. Allen, P. Prior, and A.C. Hayward (ed.), Bacterial Wilt Disease and the Ralstonia solanacearum Species Complex. APS Press, St. Paul.
35. Salles, J.F., J.A. van Veen, and J.D. van Elsas. 2004. Multivariate analyses of Burkholderia species in soil: effect of crop and land use history. Appl. Environ. Microbiol. 70:4012-4020.
36. Sato, E., Y.Y. Min, T. Shirakashi, S. Wada, and K. Toyota. 2007. Detection of root-lesion nematode, Pratylenchus penetrans (Cobb), in a nematode community using real-time PCR. Jpn. J. Nematol. 37:87-92.
37. Schonfeld, J., A. Gelsomino, L.S. Overbeek, A. van Gorissen, K. Smalla, and J.D. van Elsas. 2003. Effects of compost addition and simulated solarization on the fate of Ralstonia solanacearum biovar 2 and indigenous bacteria in soil. FEMS Microbiol. Ecol. 43:63-74.
38. Shrestha, A., K. Toyota, M. Okazaki, Y. Suga, M.A. Quevedo, A.B. Loreto, and A.L. Mariscal. 2007. Enhancement of nitrogen-fixing activity of Enterobacteriaceae strains isolated from sago palm (Metroxylon sagu) by microbial interaction with non-nitrogen fixers. Microbes Environ. 22:59-70.
39. Simons, M., H.P. Permentier, L.A. de Weger, C.A. Wijffelman, and B.J.J. Lugtenberg. 1997. Amino acid synthesis is necessary for tomato root colonization by Pseudomonas fluorescens strain WCS365. Mol. Plant-Microbe Interact. 10:102-106.
40. Sofos, J.N., and J. Samelis. 2002. Role of glucose in enhancing the temperature-dependent growth inhibition of Escherichia coli O157:H7 ATCC43895 by Pseudomonas sp. Appl. Environ. Microbiol. 68:2600-2604.
41. Tabatabai, M.A. 1994. Soil enzymes, p. 775-833. In R.W. Weaver, S. Angle, and P. Bottomley (ed.), Methods of Soil Analysis: Part 2. Microbiological and Biochemical Properties. Soil Science Society of America, Madison.
42. Tchelet, R., R. Meckenstock, P. Steinle, and J.R. van der Meer.1999. Population dynamics of an introduced bacterium degrading chlorinated benezenes in a soil column and in sewage sludge. Biodegradation 10:113-125.
43. Ter Braak, C.J.F. 1987. The analysis of vegetation-environment relationships by canonical correspondence analysis. Vegetation 69:69-77.
44. Toyota, K., and M. Kimura. 1996. Growth of the bacterial wilt pathogen Pseudomonas solanacearum introduced into soil colonized by individual soil bacteria. Soil Biol. Biochem. 28:1489-1494.
45. Toyota, K., and S. Kuninaga. 2006. Comparison of soil microbial community between soils amended with or without farmyard manure. Appl. Soil Ecol. 33:39-48.
46. Wada, S., and K. Toyota. 2007. Repeated applications of farmyard manure enhance the resistance and resilience of soil biological functions against soil disinfection. Biol. Fertil. Soils 43:349-356.
47. Weller, D.M. 1988. Biological control of soil borne plant pathogens in the rhizosphere with bacteria. Ann. Rev. Phytopathol. 26:379-407.
48. Vallad, G.E., and R.M. Goodman. 2004. Review and interpretation: systemic acquired resistance and induced systemic resistance in conventional agriculture. Crop Sci. 44:1920-1934.
49. Van Overbeek, L.S., M. Cassidy, J. Kozdroj, J.T. Trevors, and J.D. van Elsas. 2002. A polyphasic approach for studying the interaction between Ralstonia solanacearum and potential control agents in the tomato phytosphere. J. Microbiol. Methods 48:69-86.
50. Yamada, M., and M. Ogiso. 1997. Control of soil-borne diseases using antagonistic microorganisms. IV. Study on the available substrates for antagonistic bacterial strains to control Fusarium wilt of tomatoes. Res. Bull. Aichi-Ken Agric. Res. Cent. 29:141-144.