Effects of compost addition and simulated solarisation on the fate of Ralstonia solanacearum biovar 2 and indigenous bacteria in soil

FEMS Microbiology Ecology

Volumn 43, Issue 1, 2003, Pages 63-74

  Schonfeld J ^a   Gelsomino, A ^b   Van Overbeek, L S ^c   Gorissen, A ^c   Smalla, K ^a   Van Elsas, J D ^c  

^a INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

^b UNIVERSITY MEDITERRANEA OF REGGIO CALABRIA   (Italy)

^c WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Compost amendment; Denaturing gradient gel electrophoresis analysis; Immunofluorescence colony staining; Ralstonia solanacearum; Soil microcosm; Soil suppressiveness; Solarization

Indexed keywords

BACTERIUM; COMMUNITY STRUCTURE; COMPOST; SOIL MICROORGANISM;

AQUASPIRILLUM PSYCHROPHILUM; ARTICLE; BACTERIAL FLORA; BACTERIAL PLANT DISEASE; BACTERIAL STRAIN; BACTERIAL SURVIVAL; COLONY FORMING UNIT; COMPOST; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; EUBACTERIUM; GRAM NEGATIVE BACTERIUM; IMMUNOFLUORESCENCE TEST; MICROBIAL ACTIVITY; MICROBIAL POPULATION DYNAMICS; MICROCOSM; MOLECULE; NONHUMAN; PLANT RESPONSE; PLANT STEM; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RALSTONIA SOLANACEARUM; SIMULATION; SOIL MICROFLORA; SOIL SOLARIZATION; SOIL TREATMENT; STAINING; STRUCTURE ANALYSIS; VARIOVORAX PARADOXUS; WILTING;

AQUASPIRILLUM; BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; PROTEOBACTERIA; RALSTONIA SOLANACEARUM; VARIOVORAX PARADOXUS;

EID: 0037314106     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(02)00402-6     Document Type: Article

References (48)

1. Hayward A.C. Biology and epidemiology of bacterial wilt caused by Pseudomonas solanacearum. Annu. Rev. Phytopathol. 29:1991;65-87.
2. Hayward, A.C. and Hartmann, G.L. (1994) Bacterial Wilt. The Disease and its Causative Agent, Pseudomonas solanacearum. CAB International, Oxon.
3. Janse, J.D., Araluppen, F.A.X., Schans, J., Wenneker, M. and Westerhuis, W. (1998) Experiences with bacterial brown rot Ralstonia solanacearum biovar 2, race 3 in the Netherlands. In: Bacterial Wilt Disease: Molecular and Ecological Aspects (Prior, P., Allen, C. and Elphinstone, J., Eds.), pp. 146-152. Springer, Heidelberg.
4. Prior, P., Allen, C. and Elphinstone, J. (1998) Bacterial Wilt Disease: Molecular and Ecological Aspects. Springer, Berlin.
5. Elphinstone J.G. Survival and possibilities for extinction of Pseudomonas solanacearum (Smith) Smith in cool climates. Potato Res. 39:1996;403-410.
6. Poussier S., Vandewalle P., Luisetti J. Genetic diversity of African and worldwide strains of Ralstonia solanacearum as determined by PCR-restriction fragment length polymorphism analysis of the hrp gene region. Appl. Environ. Microbiol. 65:1999;2184-2194.
7. Van Elsas J.D., Kastelein P., van Bekkum P., van der Wolf J.M., de Vries P.M., van Overbeek L.S. Survival of Ralstonia solanacearum biovar 2, the causative agent of potato brown rot, in field and microcosm soils in temperate climates. Phytopathology. 90:2000;1358-1366.
8. Granada G.A., Sequeira L. Survival of Pseudomonas solanacearum in soil, rhizosphere and plant roots. Can. J. Microbiol. 29:1983;433-440.
9. Moffett M.L., Giles J.E., Wood B.A. Survival of Pseudomonas solanacearum biovars 2 and 3 in soil: effect of moisture and soil type. Soil Biol. Biochem. 15:1983;587-591.
10. Nesmith W.C., Jenkins S.F. Jr. Survival of Pseudomonas solanacearum in selected North Carolina soils. Phytopathology. 73:1983;1300-1304.
11. Shekawat G.S., Perombélon M.C.M. Factors affecting survival in soil and virulence of Pseudomonas solanacearum. Z. Pflanzenkrankh. Pflanzenschutz. 98:1991;258-267.
12. Craft C.M., Nelson E.B. Microbial properties of composts that suppress damping-off and root rot of creeping bentgrass caused by Pythium graminicola. Appl. Environ. Microbiol. 62:1996;1550-1557.
13. Hoitink H.A.J., Fahy P.C. Basis for the control of soilborne plant pathogens with compost. Annu. Rev. Phytopathol. 24:1986;93-114.
14. Hoitink H.A.J., Boehm M.J. Biocontrol within the context of soil microbial communities: a substrate-dependent phenomenon. Annu. Rev. Phytopathol. 37:1999;427-446.
15. Hoytink, H.A.J., Al Dahmani, J.-H. and Krause, M.S. (2001) The use of compost and mulch for disease suppression in soils. www.composting2002.org.
16. Ringer, C. (1998) Bibliography on compost for disease suppression. http://ncatark.uark.edu/∼steved/compost-disease-biblio.html .
17. Katan J. Solar heating (solarization) of soil for control of soil-borne pests. Annu. Rev. Phytopathol. 19:1981;211-236.
18. Denner F.D.N., Millard C.P., Wehner F.C. Effect of soil solarization and mouldboard ploughing on black dot of potato, caused by Colletotrichum coccodes. Potato Res. 43:2000;195-201.
19. Stapleton J.J. Soil solarization in various agricultural production systems. Crop Prot. 19:2000;837-841.
20. Tuitert G., Szczech M., Bollen G.J. Suppression of Rhizoctonia solani in potting mixtures amended with compost made from organic household waste. Phytopathology. 88:1998;764-773.
21. Van Bruggen A.H.C., Semenov A.M. In search of biological indicators for soil health and disease suppression. Appl. Soil Ecol. 15:2000;13-24.
22. Babich H. Crit. Rev. Microbiol. 8:1980;99-145.
23. Stotzky, G. (1974) Activity, ecology and population dynamics of microorganisms in soil. In: Microbial Ecology (Laskin, A.I. and Lechevalier, H., Eds.), pp. 57-135. CRC Press, Boca Raton, FL.
24. Van Vuurde, J.W.L. and Van der Wolf, J.M. (1995) Immunofluorescence colony-staining (IFC). In: Molecular Microbial Ecology Manual (Akkermans, A.D.L., van Elsas, J.D. and de Bruiijn, F.J., Eds.), Vol. 4.1.3, pp. 1-19. Kluwer Academic Publishers, Dordrecht.
25. Van der Wolf J.M., Van Bekkum P.J., Van Elsas J.D., Nijhuis E.H., Vriend S.G.C., Ruissen M.A. Immunofluorescence colony staining and selective enrichment in liquid medium for studying the population dynamics of Ralstonia (Pseudomonas) solanacearum (race 3) in soil. EPPO Bull. 28:1998;71-79.
26. Boudazin G., Le Roux A.C., Josi K., Labarre P., Jouan B. Design of division-specific primers of Ralstonia solanacearum and application to the identification of European isolates. Eur. J. Plant Pathol. 105:1999;373-380.
27. Muyzer G., de Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes encoding for 16S rRNA. Appl. Environ. Microbiol. 59:1993;695-700.
28. Muyzer, G., Brinkhoff, T., Nübel, U., Santegoeds, C., Schäfer, H. and Wawer, C. (1997) Denaturing gradient gel electrophoresis (DGGE) in microbial ecology. In: Molecular Microbial Ecology Manual (Akkermans, A.D.L., van Elsas, J.D. and de Bruijn, F.J., Eds.), Vol. 3.4.4, pp. 1-27. Kluwer Academic Publishers, Dordrecht.
29. Muyzer G., Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek. 73:1998;127-141.
30. Wieland, G. (2000) Analysis of microbial communities and their natural and induced shifts by separation of ribosomal nucleic acids. Ph.D. dissertation, Braunschweig University, Germany. http://www.biblio.tu-bs.de/ediss/data/20000808a/20000808a.html .
31. Heuer H., Hartung K., Wieland G., Kramer I., Smalla K. Polynucleotide probes that target a hypervariable region of 16S rRNA genes to identify bacterial isolates corresponding to bands of community fingerprints. Appl. Environ. Microbiol. 65:1999;1045-1049.
32. Van Overbeek L.S., Cassidy M., Kozdroj J., Trevors J.T., van Elsas J.D. A polyphasic approach for studying the interaction between Ralstonia solanacearum and potential control agents in the tomato phytosphere. J. Microbiol. Methods. 48:2002;69-86.
33. Smalla K., Cresswell N., Mendonca-Hagler L.C., Wolters A., van Elsas J.D. Rapid DNA extraction protocol from soil for polymerase chain reaction-mediated amplification. J. Appl. Bacteriol. 74:1993;78-85.
34. Van Elsas J.D., Mäntynen V., Wolters A.C. Soil DNA extraction and assessment of the fate of Mycobacterium chlorophenolicum strain PCP-1 in different soils via 16S ribosomal RNA gene sequence based most-probable-number PCR and immunofluorescence. Biol. Fertil. Soils. 24:1997;188-195.
35. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
36. Heuer, H., Wieland, G., Schönfeld, J., Schönwälder, S., Gomes, N.C.M. and Smalla, K. (2001) Bacterial community profiling using DGGE or TGGE analysis. In: Environmental Molecular Microbiology: Protocols and Applications (Rouchelle, P., Ed.), pp. 177-190. Horizon Scientific Press, Wymondham.
37. Gomes N.C.M., Heuer H., Schönfeld J., Costa R., Hagler-Mendonca L., Smalla K. Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis. Plant Soil. 232:2001;167-180.
38. Rademaker, J.L.W., Louws, F.J., Rossbach, U., Vinuesa, P. and de Bruijn, F.J. (1998) Computer-assisted pattern analysis of molecular fingerprints and database construction. Molecular Microbial Ecology Manual 7.1.3. Kluwer Academic Publishers, Dordrecht.
39. Li Q.B., Guy C.L. Prolonged final extension time increases cloning efficiency of PCR products. BioTechiques. 21:1996;192-196.
40. Strunk, O., Ludwig, W., Gross, O., Reichel, B., Stuckmann, N., May, M., Nonhoff, B., Lenke, M., Ginhart, T., Vilbig, A. and Westram, R. (1998) ARB - A software environment for sequence data [on line]. Department of Microbiology, TU München, Munich.
41. Stotzky G. Soil structure effects on microbial communities. Crit. Rev. Microbiol. 2:1997;59-137.
42. Vaughan, D. and Malcolm, R.E. (1985) Influence of humic substances on growth and physiological processes. In: Soil Organic Matter and Biological Activity. Martinus Nijhoff Publishers, Dordrecht, pp. 37-76.
43. Van Veen J.A., Van Overbeek L.S., Van Elsas J.D. Fate and activity of microorganisms following release into soil. Microbiol. Mol. Biol. Rev. 61:1997;121-135.
44. Gamliel A., Austerweil M., Kritzman G. Non-chemical approach to soil-borne pest management - organic amendments. Crop Prot. 19:2000;847-853.
45. Alabouvette, C., Couteaudier, Y. and Louvet, J. (1985) Soils suppressive to Fusarium wilt: mechanisms and management of suppressiveness. In: Ecology and Management of Soilborne Plant Pathogens (Parker, C.A. et al., Eds.), pp. 101-106. Am. Phytopathol. Soc.
46. Alabouvette, C., Hoeper, H., Lemanceau, P. and Steinberg, C. (1996) Soil suppressiveness to diseases induced by soil-borne plant pathogens. In: Soil Biochemistry (Stotzky, G. and Bollag, J.-M., Eds.), Vol. 9. Marcel Dekker, New York.
47. Grey B.E., Steck T.R. The viable but nonculturable state of Ralstonia solanacearum may be involved in long-term survival and plant infection. Appl. Environ. Microbiol. 67:2001;3866-3872.
48. Van Elsas J.D., Kastelein P., de Vries P.M., van Overbeek L.S. Effects of ecological factors on the survival and physiology of Ralstonia solanacearum bv. 2 in irrigation water. Can. J. Microbiol. 47:2001;842-854.