메뉴 건너뛰기




Volumn 84, Issue 15, 2010, Pages 7651-7661

Patterns of human immunodeficiency virus type 1 recombination ex vivo provide evidence for coadaptation of distant sites, resulting in purifying selection for intersubtype recombinants during replication

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT; POL PROTEIN;

EID: 77954518935     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.00276-10     Document Type: Article
Times cited : (35)

References (51)
  • 1
    • 34547761762 scopus 로고    scopus 로고
    • Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: Subtype G is a circulating recombinant form
    • Abecasis, A. B., P. Lemey, N. Vidal, T. de Oliveira, M. Peeters, R. Camacho, B. Shapiro, A. Rambaut, and A. M. Vandamme. 2007. Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form. J. Virol. 81:8543-8551.
    • (2007) J. Virol. , vol.81 , pp. 8543-8551
    • Abecasis, A.B.1    Lemey, P.2    Vidal, N.3    De Oliveira, T.4    Peeters, M.5    Camacho, R.6    Shapiro, B.7    Rambaut, A.8    Vandamme, A.M.9
  • 2
    • 0022495870 scopus 로고
    • Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone
    • Adachi, A., H. E. Gendelman, S. Koenig, T. Folks, R. Willey, A. Rabson, and M. A. Martin. 1986. Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone. J. Virol. 59:284-291. (Pubitemid 16013975)
    • (1986) Journal of Virology , vol.59 , Issue.2 , pp. 284-291
    • Adachi, A.1    Gendelman, H.E.2    Koenig, S.3
  • 3
    • 0036314411 scopus 로고    scopus 로고
    • Effects of varying sequence similarity on the frequency of repeat deletion during reverse transcription of a human immunodeficiency virus type 1 vector
    • An, W., and A. Telesnitsky. 2002. Effects of varying sequence similarity on the frequency of repeat deletion during reverse transcription of a human immunodeficiency virus type 1 vector. J. Virol. 76:7897-7902.
    • (2002) J. Virol. , vol.76 , pp. 7897-7902
    • An, W.1    Telesnitsky, A.2
  • 6
    • 0029793620 scopus 로고    scopus 로고
    • CD4 down-modulation during infection of human T cells with human immunodeficiency virus type 1 involves independent activities of vpu, env, and nef
    • Chen, B. K., R. T. Gandhi, and D. Baltimore. 1996. CD4 down-modulation during infection of human T cells with human immunodeficiency virus type 1 involves independent activities of vpu, env, and nef. J. Virol. 70:6044-6053.
    • (1996) J. Virol. , vol.70 , pp. 6044-6053
    • Chen, B.K.1    Gandhi, R.T.2    Baltimore, D.3
  • 7
    • 34249072310 scopus 로고    scopus 로고
    • Molecular determinants of HIV-1 intersubtype recombination potential
    • Chin, M. P., J. Chen, O. A. Nikolaitchik, and W. S. Hu. 2007. Molecular determinants of HIV-1 intersubtype recombination potential. Virology 363:437-446.
    • (2007) Virology , vol.363 , pp. 437-446
    • Chin, M.P.1    Chen, J.2    Nikolaitchik, O.A.3    Hu, W.S.4
  • 8
    • 21144446779 scopus 로고    scopus 로고
    • Identification of a major restriction in HIV-1 intersubtype recombination
    • Chin, M. P., T. D. Rhodes, J. Chen, W. Fu, and W. S. Hu. 2005. Identification of a major restriction in HIV-1 intersubtype recombination. Proc. Natl. Acad. Sci. U. S. A. 102:9002-9007.
    • (2005) Proc. Natl. Acad. Sci. U. S. A. , vol.102 , pp. 9002-9007
    • Chin, M.P.1    Rhodes, T.D.2    Chen, J.3    Fu, W.4    Hu, W.S.5
  • 9
    • 23244453195 scopus 로고    scopus 로고
    • Evidence for frequent reinfection with human immunodeficiency virus type 1 of a different subtype
    • Chohan, B., L. Lavreys, S. M. Rainwater, and J. Overbaugh. 2005. Evidence for frequent reinfection with human immunodeficiency virus type 1 of a different subtype. J. Virol. 79:10701-10708.
    • (2005) J. Virol. , vol.79 , pp. 10701-10708
    • Chohan, B.1    Lavreys, L.2    Rainwater, S.M.3    Overbaugh, J.4
  • 10
    • 0018304892 scopus 로고
    • Structure, replication, and recombination of retrovirus genomes: Some unifying hypotheses
    • Coffin, J. M. 1979. Structure, replication, and recombination of retrovirus genomes: some unifying hypotheses. J. Gen. Virol. 42:1-26.
    • (1979) J. Gen. Virol. , vol.42 , pp. 1-26
    • Coffin, J.M.1
  • 13
    • 69249208679 scopus 로고    scopus 로고
    • Subtype-specific differences in the human immunodeficiency virus type 1 reverse transcriptase connection subdomain of CRF01-AE are associated with higher levels of resistance to 3′-azido-3′-deoxythymidine
    • Delviks-Frankenberry, K. A., G. N. Nikolenko, F. Maldarelli, S. Hase, Y. Takebe, and V. K. Pathak. 2009. Subtype-specific differences in the human immunodeficiency virus type 1 reverse transcriptase connection subdomain of CRF01-AE are associated with higher levels of resistance to 3′-azido- 3′-deoxythymidine. J. Virol. 83:8502-8513.
    • (2009) J. Virol. , vol.83 , pp. 8502-8513
    • Delviks-Frankenberry, K.A.1    Nikolenko, G.N.2    Maldarelli, F.3    Hase, S.4    Takebe, Y.5    Pathak, V.K.6
  • 14
  • 15
    • 0026649557 scopus 로고
    • Identification of conserved amino acid residues critical for human immunodeficiency virus type 1 integrase function in vitro
    • Engelman, A., and R. Craigie. 1992. Identification of conserved amino acid residues critical for human immunodeficiency virus type 1 integrase function in vitro. J. Virol. 66:6361-6369.
    • (1992) J. Virol. , vol.66 , pp. 6361-6369
    • Engelman, A.1    Craigie, R.2
  • 16
    • 33646374954 scopus 로고    scopus 로고
    • Dissection of a circumscribed recombination hot spot in HIV-1 after a single infectious cycle
    • Galetto, R., V. Giacomoni, M. Veron, and M. Negroni. 2006. Dissection of a circumscribed recombination hot spot in HIV-1 after a single infectious cycle. J. Biol. Chem. 281:2711-2720.
    • (2006) J. Biol. Chem. , vol.281 , pp. 2711-2720
    • Galetto, R.1    Giacomoni, V.2    Veron, M.3    Negroni, M.4
  • 17
    • 58149390387 scopus 로고    scopus 로고
    • Recombination analysis and structure prediction show correlation between breakpoint clusters and RNA hairpins in the pol gene of human immunodeficiency virus type 1 unique recombinant forms
    • Galli, A., A. Lai, S. Corvasce, F. Saladini, C. Riva, L. Deho, I. Caramma, M. Franzetti, L. Romano, M. Galli, M. Zazzi, and C. Balotta. 2008. Recombination analysis and structure prediction show correlation between breakpoint clusters and RNA hairpins in the pol gene of human immunodeficiency virus type 1 unique recombinant forms. J. Gen. Virol. 89:3119-3125.
    • (2008) J. Gen. Virol. , vol.89 , pp. 3119-3125
    • Galli, A.1    Lai, A.2    Corvasce, S.3    Saladini, F.4    Riva, C.5    Deho, L.6    Caramma, I.7    Franzetti, M.8    Romano, L.9    Galli, M.10    Zazzi, M.11    Balotta, C.12
  • 19
    • 29744448144 scopus 로고    scopus 로고
    • HIV-1 subtypes: Epidemiology and significance for HIV management
    • Geretti, A. M. 2006. HIV-1 subtypes: epidemiology and significance for HIV management. Curr. Opin. Infect. Dis. 19:1-7.
    • (2006) Curr. Opin. Infect. Dis. , vol.19 , pp. 1-7
    • Geretti, A.M.1
  • 20
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999:95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.1999 , pp. 95-98
    • Hall, T.A.1
  • 21
    • 33750253231 scopus 로고    scopus 로고
    • Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004
    • Hemelaar, J., E. Gouws, P. D. Ghys, and S. Osmanov. 2006. Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004. AIDS 20:W13-W23.
    • (2006) AIDS , vol.20
    • Hemelaar, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 22
    • 0025095253 scopus 로고
    • Genetic consequences of packaging two RNA genomes in one retroviral particle: Pseudodiploidy and high rate of genetic recombination
    • Hu, W. S., and H. M. Temin. 1990. Genetic consequences of packaging two RNA genomes in one retroviral particle: pseudodiploidy and high rate of genetic recombination. Proc. Natl. Acad. Sci. U. S. A. 87:1556-1560.
    • (1990) Proc. Natl. Acad. Sci. U. S. A. , vol.87 , pp. 1556-1560
    • Hu, W.S.1    Temin, H.M.2
  • 23
    • 4043095592 scopus 로고    scopus 로고
    • Retroviral recombination: Review of genetic analyses
    • Hu, W. S., T. Rhodes, Q. Dang, and V. Pathak. 2003. Retroviral recombination: review of genetic analyses. Front. Biosci. 8:d143-d155.
    • (2003) Front. Biosci. , vol.8
    • Hu, W.S.1    Rhodes, T.2    Dang, Q.3    Pathak, V.4
  • 24
    • 0033977268 scopus 로고    scopus 로고
    • High rate of recombination throughout the human immunodeficiency virus type 1 genome
    • DOI 10.1128/JVI.74.3.1234-1240.2000
    • Jetzt, A. E., H. Yu, G. J. Klarmann, Y. Ron, B. D. Preston, and J. P. Dougherty. 2000. High rate of recombination throughout the human immunodeficiency virus type 1 genome. J. Virol. 74:1234-1240. (Pubitemid 30044072)
    • (2000) Journal of Virology , vol.74 , Issue.3 , pp. 1234-1240
    • Jetzt, A.E.1    Yu, H.2    Klarmann, G.J.3    Ron, Y.4    Preston, B.D.5    Dougherty, J.P.6
  • 28
    • 0342699700 scopus 로고    scopus 로고
    • A Rev-independent human immunodeficiency virus type 1 (HIV-1)-based vector that exploits a codon-optimized HIV-1 gag-pol gene
    • Kotsopoulou, E., V. N. Kim, A. J. Kingsman, S. M. Kingsman, and K. A. Mitrophanous. 2000. A Rev-independent human immunodeficiency virus type 1 (HIV-1)-based vector that exploits a codon-optimized HIV-1 gag-pol gene. J. Virol. 74:4839-4852.
    • (2000) J. Virol. , vol.74 , pp. 4839-4852
    • Kotsopoulou, E.1    Kim, V.N.2    Kingsman, A.J.3    Kingsman, S.M.4    Mitrophanous, K.A.5
  • 30
    • 33751249244 scopus 로고    scopus 로고
    • HIV-1 subtype and circulating recombinant form (CRF) reference sequences
    • T. Leitner, B. Foley, B. H. Hahn, P. A. Marx, F. E. McCutchan, J. W. Mellors, S. Wolinsky, and B. Korber (ed.), Los Alamos National Laboratory, Los Alamos, NM
    • Leitner, T., B. Korber, M. Daniels, C. Calef, and B. Foley. 2005. HIV-1 subtype and circulating recombinant form (CRF) reference sequences, p. 41-48. In T. Leitner, B. Foley, B. H. Hahn, P. A. Marx, F. E. McCutchan, J. W. Mellors, S. Wolinsky, and B. Korber (ed.), HIV Sequence Compendium. Los Alamos National Laboratory, Los Alamos, NM.
    • (2005) HIV Sequence Compendium , pp. 41-48
    • Leitner, T.1    Korber, B.2    Daniels, M.3    Calef, C.4    Foley, B.5
  • 32
    • 0035936781 scopus 로고    scopus 로고
    • HIV-1 sequence variation: Drift, shift, and attenuation
    • Malim, M. H., and M. Emerman. 2001. HIV-1 sequence variation: drift, shift, and attenuation. Cell 104:469-472.
    • (2001) Cell , vol.104 , pp. 469-472
    • Malim, M.H.1    Emerman, M.2
  • 33
    • 0033605577 scopus 로고    scopus 로고
    • Leukotriene binding, signaling, and analysis of HIV coreceptor function in mouse and human leukotriene B4 receptortransfected cells
    • Martin, V., P. Ronde, D. Unett, A. Wong, T. L. Hoffman, A. L. Edinger, R. W. Doms, and C. D. Funk. 1999. Leukotriene binding, signaling, and analysis of HIV coreceptor function in mouse and human leukotriene B4 receptortransfected cells. J. Biol. Chem. 274:8597-8603.
    • (1999) J. Biol. Chem. , vol.274 , pp. 8597-8603
    • Martin, V.1    Ronde, P.2    Unett, D.3    Wong, A.4    Hoffman, T.L.5    Edinger, A.L.6    Doms, R.W.7    Funk, C.D.8
  • 34
    • 33745621323 scopus 로고    scopus 로고
    • Global epidemiology of HIV
    • McCutchan, F. E. 2006. Global epidemiology of HIV. J. Med. Virol. 78(Suppl. 1):S7-S12.
    • (2006) J. Med. Virol. , vol.78 , Issue.SUPPL. 1
    • McCutchan, F.E.1
  • 35
    • 34247095230 scopus 로고    scopus 로고
    • Dimer initiation signal of human immunodeficiency virus type 1: Its role in partner selection during RNA copackaging and its effects on recombination
    • Moore, M. D., W. Fu, O. Nikolaitchik, J. Chen, R. G. Ptak, and W. S. Hu. 2007. Dimer initiation signal of human immunodeficiency virus type 1: its role in partner selection during RNA copackaging and its effects on recombination. J. Virol. 81:4002-4011.
    • (2007) J. Virol. , vol.81 , pp. 4002-4011
    • Moore, M.D.1    Fu, W.2    Nikolaitchik, O.3    Chen, J.4    Ptak, R.G.5    Hu, W.S.6
  • 36
    • 0036999990 scopus 로고    scopus 로고
    • Genetic recombination and its role in the development of the HIV-1 pandemic
    • Nájera, R., E. Delgado, L. Pérez-Alvarez, and M. M. Thomson. 2002. Genetic recombination and its role in the development of the HIV-1 pandemic. AIDS 16(Suppl. 4):S3-S16.
    • (2002) AIDS , vol.16 , Issue.SUPPL. 4
    • Nájera, R.1    Delgado, E.2    Pérez-Alvarez, L.3    Thomson, M.M.4
  • 39
    • 13744254540 scopus 로고    scopus 로고
    • Genetic recombination of human immunodeficiency virus type 1 in one round of viral replication: Effects of genetic distance, target cells, accessory genes, and lack of high negative interference in crossover events
    • Rhodes, T. D., O. Nikolaitchik, J. Chen, D. Powell, and W. S. Hu. 2005. Genetic recombination of human immunodeficiency virus type 1 in one round of viral replication: effects of genetic distance, target cells, accessory genes, and lack of high negative interference in crossover events. J. Virol. 79:1666-1677.
    • (2005) J. Virol. , vol.79 , pp. 1666-1677
    • Rhodes, T.D.1    Nikolaitchik, O.2    Chen, J.3    Powell, D.4    Hu, W.S.5
  • 44
    • 30944461040 scopus 로고    scopus 로고
    • Molecular epidemiology of HIV-1 variants in the global AIDS pandemic: An update
    • Thomson, M. M., and R. Najera. 2005. Molecular epidemiology of HIV-1 variants in the global AIDS pandemic: an update. AIDS Rev. 7:210-224.
    • (2005) AIDS Rev. , vol.7 , pp. 210-224
    • Thomson, M.M.1    Najera, R.2
  • 45
    • 0036319711 scopus 로고    scopus 로고
    • Molecular epidemiology of HIV-1 genetic forms and its significance for vaccine development and therapy
    • Thomson, M. M., L. Perez-Alvarez, and R. Najera. 2002. Molecular epidemiology of HIV-1 genetic forms and its significance for vaccine development and therapy. Lancet Infect. Dis. 2:461-471.
    • (2002) Lancet Infect. Dis. , vol.2 , pp. 461-471
    • Thomson, M.M.1    Perez-Alvarez, L.2    Najera, R.3
  • 46
    • 34547482453 scopus 로고    scopus 로고
    • The origins of HIV and implications for the global epidemic
    • Van Heuverswyn, F., and M. Peeters. 2007. The origins of HIV and implications for the global epidemic. Curr. Infect. Dis. Rep. 9:338-346.
    • (2007) Curr. Infect. Dis. Rep. , vol.9 , pp. 338-346
    • Van Heuverswyn, F.1    Peeters, M.2
  • 47
    • 3843112243 scopus 로고    scopus 로고
    • HIV-1 subtype distribution and the problem of drug resistance
    • DOI 10.1097/00002030-200406003-00012
    • Wainberg, M. A. 2004. HIV-1 subtype distribution and the problem of drug resistance. AIDS 18(Suppl. 3):S63-S68. (Pubitemid 39037462)
    • (2004) AIDS , vol.18 , Issue.SUPPL. 3
    • Wainberg, M.A.1
  • 49
    • 0036101339 scopus 로고    scopus 로고
    • Functional evaluation of DC-SIGN monoclonal antibodies reveals DCSIGN interactions with ICAM-3 do not promote human immunodeficiency virus type 1 transmission
    • Wu, L., T. D. Martin, R. Vazeux, D. Unutmaz, and V. N. KewalRamani. 2002. Functional evaluation of DC-SIGN monoclonal antibodies reveals DCSIGN interactions with ICAM-3 do not promote human immunodeficiency virus type 1 transmission. J. Virol. 76:5905-5914.
    • (2002) J. Virol. , vol.76 , pp. 5905-5914
    • Wu, L.1    Martin, T.D.2    Vazeux, R.3    Unutmaz, D.4    Kewalramani, V.N.5
  • 51
    • 0028705684 scopus 로고
    • Generation of high-titer pseudotyped retroviral vectors with very broad host range
    • Yee, J. K., T. Friedmann, and J. C. Burns. 1994. Generation of high-titer pseudotyped retroviral vectors with very broad host range. Methods Cell. Biol. 43(Pt. A):99-112.
    • (1994) Methods Cell. Biol. , vol.43 , Issue.PART A , pp. 99-112
    • Yee, J.K.1    Friedmann, T.2    Burns, J.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.