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Volumn 74, Issue 3, 2000, Pages 1234-1240

High rate of recombination throughout the human immunodeficiency virus type 1 genome

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA; VIRUS VECTOR;

EID: 0033977268     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.74.3.1234-1240.2000     Document Type: Article
Times cited : (307)

References (52)
  • 1
    • 0022495870 scopus 로고
    • Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone
    • Adachi, A., H. E. Gendelman, S. Koenig, T. Folks, R. Willey, A. Rabson, and M. A. Martin. 1986. Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone. J. Virol. 59:284-291.
    • (1986) J. Virol. , vol.59 , pp. 284-291
    • Adachi, A.1    Gendelman, H.E.2    Koenig, S.3    Folks, T.4    Willey, R.5    Rabson, A.6    Martin, M.A.7
  • 2
    • 0031931586 scopus 로고    scopus 로고
    • Correlated template-switching events during minus-strand DNA synthesis: A mechanism for high negative interference during retroviral recombination
    • Anderson, J. A., R. J. Teufel II, P. D. Yin, and W.-S. Hu. 1998. Correlated template-switching events during minus-strand DNA synthesis: a mechanism for high negative interference during retroviral recombination. J. Virol. 72:1186-1194.
    • (1998) J. Virol. , vol.72 , pp. 1186-1194
    • Anderson, J.A.1    Teufel R.J. II2    Yin, P.D.3    Hu, W.-S.4
  • 3
    • 0033557071 scopus 로고    scopus 로고
    • Transmission of human immunodeficiency type 1 viruses with intersubtype recombinant long terminal repeat sequences
    • Blackard, J. T., B. R. Renjifo, D. Mwakagile, M. A. Montano, W. W. Fawzi, and M. Essex. 1999. Transmission of human immunodeficiency type 1 viruses with intersubtype recombinant long terminal repeat sequences. Virology 254:220-225.
    • (1999) Virology , vol.254 , pp. 220-225
    • Blackard, J.T.1    Renjifo, B.R.2    Mwakagile, D.3    Montano, M.A.4    Fawzi, W.W.5    Essex, M.6
  • 6
    • 0018304892 scopus 로고
    • Structure, replication, and recombination of retrovirus genomes: Some unifying hypotheses
    • Coffin, J. M. 1979. Structure, replication, and recombination of retrovirus genomes: some unifying hypotheses. J. Gen. Virol. 42:1-26.
    • (1979) J. Gen. Virol. , vol.42 , pp. 1-26
    • Coffin, J.M.1
  • 7
    • 0003358914 scopus 로고    scopus 로고
    • Retroviridae: The viruses and their replication
    • B. N. Fields, D. M. Knipe, and P. M. Howley (ed.). Lippincott-Raven Publishers, Philadelphia, Pa
    • Coffin, J. M. 1996. Retroviridae: the viruses and their replication, p. 1767-1847. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Virology. Lippincott-Raven Publishers, Philadelphia, Pa.
    • (1996) Virology , pp. 1767-1847
    • Coffin, J.M.1
  • 8
    • 0030820346 scopus 로고    scopus 로고
    • Slower evolution of human immunodeficiency virus type 1 quasispecies during progression to AIDS
    • Delwart, E. L., H. Pan, H. W. Sheppard, D. Wolpert, A. U. Neumann, B. Korber, and J. I. Mullins. 1997. Slower evolution of human immunodeficiency virus type 1 quasispecies during progression to AIDS. J. Virol. 71: 7498-7508.
    • (1997) J. Virol. , vol.71 , pp. 7498-7508
    • Delwart, E.L.1    Pan, H.2    Sheppard, H.W.3    Wolpert, D.4    Neumann, A.U.5    Korber, B.6    Mullins, J.I.7
  • 10
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 11
    • 0027222068 scopus 로고
    • Viral quasispecies
    • Eigen, M. 1993. Viral quasispecies. Sci. Am. 269:42-49.
    • (1993) Sci. Am. , vol.269 , pp. 42-49
    • Eigen, M.1
  • 13
    • 9544220664 scopus 로고    scopus 로고
    • The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin
    • Gao, F., D. L. Robertson, S. G. Morrison, H. Hui, S. Craig, J. Decker, P. N. Fultz, M. Girard, G. M. Shaw, B. H. Hahn, and P. M. Sharp. 1996. The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin. J. Virol. 70:7013-7029.
    • (1996) J. Virol. , vol.70 , pp. 7013-7029
    • Gao, F.1    Robertson, D.L.2    Morrison, S.G.3    Hui, H.4    Craig, S.5    Decker, J.6    Fultz, P.N.7    Girard, M.8    Shaw, G.M.9    Hahn, B.H.10    Sharp, P.M.11
  • 14
    • 0027265168 scopus 로고
    • A molecular clone of HIV-1 tropic and cytopathic for human and chimpanzee lymphocytes
    • Ghosh, S. K., P. N. Fultz, E. Keddie, M. S. Saag, P. M. Sharp, B. H. Hahn, and G. M. Shaw. 1993. A molecular clone of HIV-1 tropic and cytopathic for human and chimpanzee lymphocytes. Virology 194:858-864.
    • (1993) Virology , vol.194 , pp. 858-864
    • Ghosh, S.K.1    Fultz, P.N.2    Keddie, E.3    Saag, M.S.4    Sharp, P.M.5    Hahn, B.H.6    Shaw, G.M.7
  • 15
    • 0001192771 scopus 로고
    • High efficiency gene transfer into mammalian cells
    • D. M. Glover (ed.). IRL Press, Oxford, England
    • Gorman, C. 1985. High efficiency gene transfer into mammalian cells, p. 143-190. In D. M. Glover (ed.), DNA cloning. IRL Press, Oxford, England.
    • (1985) DNA Cloning , pp. 143-190
    • Gorman, C.1
  • 16
    • 0025635705 scopus 로고
    • Retroviral recombination and reverse transcription
    • Hu, W. S., and H. M. Temin. 1990. Retroviral recombination and reverse transcription. Science 250:1227-1233.
    • (1990) Science , vol.250 , pp. 1227-1233
    • Hu, W.S.1    Temin, H.M.2
  • 17
    • 0025095253 scopus 로고
    • Genetic consequences of packaging two RNA genomes in one retroviral particle: Pseudodiploidy and high rate of genetic recombination
    • Hu, W. S., and H. M. Temin. 1990. Genetic consequences of packaging two RNA genomes in one retroviral particle: pseudodiploidy and high rate of genetic recombination. Proc. Natl. Acad. Sci. USA 87:1556-1560.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 1556-1560
    • Hu, W.S.1    Temin, H.M.2
  • 18
    • 0026719994 scopus 로고
    • Effect of gamma radiation on retroviral recombination
    • Hu, W. S., and H. M. Temin. 1992. Effect of gamma radiation on retroviral recombination. J. Virol. 66:4457-4463.
    • (1992) J. Virol. , vol.66 , pp. 4457-4463
    • Hu, W.S.1    Temin, H.M.2
  • 19
    • 0024519430 scopus 로고
    • Human immunodeficiency virus 1 reverse transcriptase. Template binding, processivity, strand displacement synthesis, and template switching
    • Huber, H. E., J. M. McCoy, J. S. Seehra, and C. C. Richardson. 1989. Human immunodeficiency virus 1 reverse transcriptase. Template binding, processivity, strand displacement synthesis, and template switching. J. Biol. Chem. 264:4669-4678.
    • (1989) J. Biol. Chem. , vol.264 , pp. 4669-4678
    • Huber, H.E.1    McCoy, J.M.2    Seehra, J.S.3    Richardson, C.C.4
  • 20
    • 0017910010 scopus 로고
    • The mechanism for genetic recombination in the avian retroviruses
    • Hunter, E. 1978. The mechanism for genetic recombination in the avian retroviruses. Curr. Top. Microbiol. Immunol. 79:295-309.
    • (1978) Curr. Top. Microbiol. Immunol. , vol.79 , pp. 295-309
    • Hunter, E.1
  • 21
    • 0028147389 scopus 로고
    • One retroviral RNA is sufficient for synthesis of viral DNA
    • Jones, J. S., R. W. Allan, and H. M. Temin. 1994. One retroviral RNA is sufficient for synthesis of viral DNA. J. Virol. 68:207-216.
    • (1994) J. Virol. , vol.68 , pp. 207-216
    • Jones, J.S.1    Allan, R.W.2    Temin, H.M.3
  • 22
    • 0020174308 scopus 로고
    • Retroviral DNA H structures: Displacement-assimilation model of recombination
    • Junghans, R. P., L. R. Boone, and A. M. Skalka. 1982. Retroviral DNA H structures: displacement-assimilation model of recombination. Cell 30:53-62.
    • (1982) Cell , vol.30 , pp. 53-62
    • Junghans, R.P.1    Boone, L.R.2    Skalka, A.M.3
  • 23
    • 0000333554 scopus 로고    scopus 로고
    • Evidence for a unique mechanism of strand transfer from the transactivation response region of HIV-1
    • Kim, J. K., C. Palaniappan, W. Wu, P. J. Fay, and R. A. Bambara. 1997. Evidence for a unique mechanism of strand transfer from the transactivation response region of HIV-1. J. Biol. Chem. 272:16769-16777.
    • (1997) J. Biol. Chem. , vol.272 , pp. 16769-16777
    • Kim, J.K.1    Palaniappan, C.2    Wu, W.3    Fay, P.J.4    Bambara, R.A.5
  • 24
    • 0002790119 scopus 로고    scopus 로고
    • Updated proposal of reference sequences of HIV-1 genetic subtypes
    • B. Korber, B. Hahn, B. Foley, J. W. Mellors, L. Leitner, G. Myers, F. McCutchan, and C. Kuiken (ed.). Los Alamos National Laboratory, Los Alamos, N.Mex
    • Leitner, T., B. Korber, D. Robertson, F. Gao, and B. Hahn. 1997. Updated proposal of reference sequences of HIV-1 genetic subtypes, p. III-19-III-24. In B. Korber, B. Hahn, B. Foley, J. W. Mellors, L. Leitner, G. Myers, F. McCutchan, and C. Kuiken (ed.), Human retroviruses and AIDS: a compilation and analysis of nucleic acid and amino acid sequences. Los Alamos National Laboratory, Los Alamos, N.Mex.
    • (1997) Human Retroviruses and AIDS: A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences
    • Leitner, T.1    Korber, B.2    Robertson, D.3    Gao, F.4    Hahn, B.5
  • 25
    • 0029075130 scopus 로고
    • Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
    • Mansky, L. M., and H. M. Temin. 1995. Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J. Virol. 69:5087-5094.
    • (1995) J. Virol. , vol.69 , pp. 5087-5094
    • Mansky, L.M.1    Temin, H.M.2
  • 26
    • 0024239024 scopus 로고
    • Construction and use of a safe and efficient amphotropic packaging cell line
    • Markowitz, D., S. Goff, and A. Bank. 1988. Construction and use of a safe and efficient amphotropic packaging cell line. Virology 167:400-406.
    • (1988) Virology , vol.167 , pp. 400-406
    • Markowitz, D.1    Goff, S.2    Bank, A.3
  • 28
    • 0031058043 scopus 로고    scopus 로고
    • Evolution of human immunodeficiency virus type 1env sequence variation in patients with diverse rates of disease progression and T-cell function
    • McDonald, R. A., D. L. Mayers, R. C. Chung, K. F. Wagner, S. Ratto-Kim, D. L. Birx, and N. L. Michael. 1997. Evolution of human immunodeficiency virus type 1env sequence variation in patients with diverse rates of disease progression and T-cell function. J. Virol. 71:1871-1879.
    • (1997) J. Virol. , vol.71 , pp. 1871-1879
    • McDonald, R.A.1    Mayers, D.L.2    Chung, R.C.3    Wagner, K.F.4    Ratto-Kim, S.5    Birx, D.L.6    Michael, N.L.7
  • 29
    • 0025005828 scopus 로고
    • Construction and use of a human immunodeficiency virus vector for analysis of virus infectivity
    • Page, K. A., N. R. Landau, and D. R. Littman. 1990. Construction and use of a human immunodeficiency virus vector for analysis of virus infectivity. J. Virol. 64:5270-5276.
    • (1990) J. Virol. , vol.64 , pp. 5270-5276
    • Page, K.A.1    Landau, N.R.2    Littman, D.R.3
  • 30
    • 0028801333 scopus 로고
    • Genetic rearrangements occurring during a single cycle of murine leukemia virus vector replication: Characterization and implications
    • Parthasarathi, S., A. Varela-Echavarria, Y. Ron, B. D. Preston, and J. P. Dougherty. 1995. Genetic rearrangements occurring during a single cycle of murine leukemia virus vector replication: characterization and implications. J. Virol. 69:7991-8000.
    • (1995) J. Virol. , vol.69 , pp. 7991-8000
    • Parthasarathi, S.1    Varela-Echavarria, A.2    Ron, Y.3    Preston, B.D.4    Dougherty, J.P.5
  • 31
    • 0026528541 scopus 로고
    • 5-Azacytidine and RNA secondary structure increase the retrovirus mutation rate
    • Pathak, V. K., and H. M. Temin. 1992. 5-Azacytidine and RNA secondary structure increase the retrovirus mutation rate. J. Virol. 66:3093-3100.
    • (1992) J. Virol. , vol.66 , pp. 3093-3100
    • Pathak, V.K.1    Temin, H.M.2
  • 33
    • 0002133523 scopus 로고    scopus 로고
    • Intersubtype recombinant HIV-1 sequences
    • B. Korber, B. Hahn, B. Foley, J. W. Mellors, L. Leitner, G. Myers, F. McCutchan, and C. Kuiken (ed.). Los Alamos National Laboratory, Los Alamos, N.Mex
    • Robertson, D. L., F. Gao, B. H. Hahn, and P. M. Sharp. 1997. Intersubtype recombinant HIV-1 sequences, p. III-25-III-30. In B. Korber, B. Hahn, B. Foley, J. W. Mellors, L. Leitner, G. Myers, F. McCutchan, and C. Kuiken (ed.), Human retroviruses and AIDS: a compilation and analysis of nucleic acid and amino acid sequences. Los Alamos National Laboratory, Los Alamos, N.Mex.
    • (1997) Human Retroviruses and AIDS: A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences
    • Robertson, D.L.1    Gao, F.2    Hahn, B.H.3    Sharp, P.M.4
  • 38
    • 0023293718 scopus 로고
    • Genetic recombination
    • Stahl, F. W. 1987. Genetic recombination. Sci. Am. 256:90-101.
    • (1987) Sci. Am. , vol.256 , pp. 90-101
    • Stahl, F.W.1
  • 39
    • 0030345354 scopus 로고    scopus 로고
    • Genetic variability of HIV-1
    • Subbarao, S., and G. Schochetman. 1996. Genetic variability of HIV-1. AIDS 10(Suppl. A):S13-S23.
    • (1996) AIDS , vol.10 , Issue.SUPPL. A
    • Subbarao, S.1    Schochetman, G.2
  • 41
    • 0002296754 scopus 로고    scopus 로고
    • Reverse transcriptase and the generation of retroviral diversity
    • J. M. Coffin, S. H. Hughes, and H. E. Varmus (ed.). Cold Spring Harbor Laboratory Press. Cold Spring Harbor, N.Y.
    • Telesnitsky, A., and S. P. Goff. 1997. Reverse transcriptase and the generation of retroviral diversity, p. 121-160. In J. M. Coffin, S. H. Hughes, and H. E. Varmus (ed.), Retroviruses. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, N.Y.
    • (1997) Retroviruses , pp. 121-160
    • Telesnitsky, A.1    Goff, S.P.2
  • 42
    • 0027180278 scopus 로고
    • Retrovirus variation and reverse transcription: Abnormal strand transfers result in retrovirus genetic variation
    • Temin, H. M. 1993. Retrovirus variation and reverse transcription: abnormal strand transfers result in retrovirus genetic variation. Proc. Natl. Acad. Sci. USA 90:6900-6903.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 6900-6903
    • Temin, H.M.1
  • 43
    • 0032503218 scopus 로고    scopus 로고
    • The first strand transfer during HIV-1 reverse transcription can occur either intramolecularly or intermolecularly
    • van Wamel, J. L., and B. Berkhout. 1998. The first strand transfer during HIV-1 reverse transcription can occur either intramolecularly or intermolecularly. Virology 244:245-251.
    • (1998) Virology , vol.244 , pp. 245-251
    • Van Wamel, J.L.1    Berkhout, B.2
  • 44
    • 0002168527 scopus 로고
    • The genome of avian RNA tumor viruses: A discussion of four models
    • L. Sylvestri (ed.). North-Holland Publishing Co., Amsterdam, The Netherlands
    • Vogt, P. K. 1973. The genome of avian RNA tumor viruses: a discussion of four models, p. 35-41. In L. Sylvestri (ed.), Possible episomes in eukaryotes. North-Holland Publishing Co., Amsterdam, The Netherlands.
    • (1973) Possible Episomes in Eukaryotes , pp. 35-41
    • Vogt, P.K.1
  • 45
    • 0026778614 scopus 로고
    • Dynamic changes in HIV-1 quasispecies from azidothymidine (AZT)-treated patients
    • Wahlberg, J., J. Albert, J. Lundeberg, S. Cox, B. Wahren, and M. Uhlen. 1992. Dynamic changes in HIV-1 quasispecies from azidothymidine (AZT)-treated patients. FASEB J. 6:2843-2847.
    • (1992) FASEB J. , vol.6 , pp. 2843-2847
    • Wahlberg, J.1    Albert, J.2    Lundeberg, J.3    Cox, S.4    Wahren, B.5    Uhlen, M.6
  • 46
    • 0026518911 scopus 로고
    • Human immunodeficiency virus type 1 quasispecies in vivo and ex vivo
    • Wain-Hobson, S. 1992. Human immunodeficiency virus type 1 quasispecies in vivo and ex vivo. Curr. Top. Microbiol. Immunol. 176:181-193.
    • (1992) Curr. Top. Microbiol. Immunol. , vol.176 , pp. 181-193
    • Wain-Hobson, S.1
  • 47
    • 0033045438 scopus 로고    scopus 로고
    • Reverse transcription of the yeast Ty1 retrotransposon: The mode of first strand transfer is either intermolecular or intramolecular
    • Wilhelm, M., M. Boutabout, T. Heyman, and F. X. Wilhelm. 1999. Reverse transcription of the yeast Ty1 retrotransposon: the mode of first strand transfer is either intermolecular or intramolecular. J. Mol. Biol. 288:505-510.
    • (1999) J. Mol. Biol. , vol.288 , pp. 505-510
    • Wilhelm, M.1    Boutabout, M.2    Heyman, T.3    Wilhelm, F.X.4
  • 48
    • 0023461920 scopus 로고
    • High-frequency deletion between homologous sequences during retrotransposition of Ty elements in Saccharomyces cerevisiae
    • Xu, H., and J. D. Boeke. 1987. High-frequency deletion between homologous sequences during retrotransposition of Ty elements in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 84:8553-8557.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 8553-8557
    • Xu, H.1    Boeke, J.D.2
  • 49
    • 0032561343 scopus 로고    scopus 로고
    • The nature of human immunodeficiency virus type 1 strand transfers
    • Yu, H., A. E. Jetzt, Y. Ron, B. D. Preston, and J. P. Dougherty. 1998. The nature of human immunodeficiency virus type 1 strand transfers. J. Biol. Chem. 273:28384-28391.
    • (1998) J. Biol. Chem. , vol.273 , pp. 28384-28391
    • Yu, H.1    Jetzt, A.E.2    Ron, Y.3    Preston, B.D.4    Dougherty, J.P.5
  • 50
    • 8944249290 scopus 로고    scopus 로고
    • Inducible human immunodeficiency virus type 1 packaging cell lines
    • Yu, H., A. B. Rabson, M. Kaul, Y. Ron, and J. P. Dougherty. 1996. Inducible human immunodeficiency virus type 1 packaging cell lines. J. Virol. 70:4530-4537.
    • (1996) J. Virol. , vol.70 , pp. 4530-4537
    • Yu, H.1    Rabson, A.B.2    Kaul, M.3    Ron, Y.4    Dougherty, J.P.5
  • 51
    • 0029998895 scopus 로고    scopus 로고
    • Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: Evidence for viral compartmentalization and selection during sexual transmission
    • Zhu, T., N. Wang, A. Carr, D. S. Nam, R. Moor-Jankowski, D. A. Cooper, and D. D. Ho. 1996. Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: evidence for viral compartmentalization and selection during sexual transmission. J. Virol. 70:3098-3107.
    • (1996) J. Virol. , vol.70 , pp. 3098-3107
    • Zhu, T.1    Wang, N.2    Carr, A.3    Nam, D.S.4    Moor-Jankowski, R.5    Cooper, D.A.6    Ho, D.D.7
  • 52
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • Zuker, M., and P. Stiegler. 1981. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res. 9:133-148.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2


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