-
1
-
-
0035369086
-
Structure of the replicating complex of a pol α family DNA polymerase
-
Franklin M.C., Wang J., Steitz T.A. Structure of the replicating complex of a pol α family DNA polymerase. Cell 2001, 105:657-667.
-
(2001)
Cell
, vol.105
, pp. 657-667
-
-
Franklin, M.C.1
Wang, J.2
Steitz, T.A.3
-
2
-
-
77949568225
-
DNA polymerase proofreading: multiple roles maintain genome stability
-
Reha-Krantz L.J. DNA polymerase proofreading: multiple roles maintain genome stability. Biochim. Biophys. Acta 2009, 1804:1049-1063.
-
(2009)
Biochim. Biophys. Acta
, vol.1804
, pp. 1049-1063
-
-
Reha-Krantz, L.J.1
-
3
-
-
63549113890
-
Loading clamps for DNA replication and repair
-
Bloom L.B. Loading clamps for DNA replication and repair. DNA Repair 2009, 8:570-578.
-
(2009)
DNA Repair
, vol.8
, pp. 570-578
-
-
Bloom, L.B.1
-
4
-
-
0027998846
-
Motif A of bacteriophage T4 DNA polymerase: role in primer extension and DNA replication fidelity
-
Reha-Krantz L.J., Nonay R.L. Motif A of bacteriophage T4 DNA polymerase: role in primer extension and DNA replication fidelity. J. Biol. Chem. 1994, 269:5635-5643.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 5635-5643
-
-
Reha-Krantz, L.J.1
Nonay, R.L.2
-
5
-
-
0037174863
-
Using 2-aminopurine fluorescence to measure incorporation of incorrect nucleotides by wild type and mutant bacteriophage T4 DNA polymerases
-
Fidalgo da Silva E., Mandal S.S., Reha-Krantz L.J. Using 2-aminopurine fluorescence to measure incorporation of incorrect nucleotides by wild type and mutant bacteriophage T4 DNA polymerases. J. Biol. Chem. 2002, 277:40640-40649.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 40640-40649
-
-
Fidalgo da Silva, E.1
Mandal, S.S.2
Reha-Krantz, L.J.3
-
6
-
-
0027976768
-
A single mutation in bacteriophage T4 DNA polymerase (A737V, tsL141) decreases the processivity as a polymerase and increases its processivity as a 3'→5' exonuclease
-
Spacciapoli P., Nossal N.G. A single mutation in bacteriophage T4 DNA polymerase (A737V, tsL141) decreases the processivity as a polymerase and increases its processivity as a 3'→5' exonuclease. J. Biol. Chem. 1994, 269:438-446.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 438-446
-
-
Spacciapoli, P.1
Nossal, N.G.2
-
7
-
-
0028091044
-
Interactions of DNA polymerase and DNA helicases within the bacteriophage T4 DNA replication complex
-
Spacciapoli P., Nossal N.G. Interactions of DNA polymerase and DNA helicases within the bacteriophage T4 DNA replication complex. J. Biol. Chem. 1994, 269:447-455.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 447-455
-
-
Spacciapoli, P.1
Nossal, N.G.2
-
8
-
-
0028033533
-
The slow dissociation of the T4 DNA polymerase holoenzyme when stalled by nucleotide omission
-
Hacker K.J., Alberts B.M. The slow dissociation of the T4 DNA polymerase holoenzyme when stalled by nucleotide omission. J. Biol. Chem. 1994, 269:24209-24220.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 24209-24220
-
-
Hacker, K.J.1
Alberts, B.M.2
-
9
-
-
0028147234
-
The rapid dissociation of the T4 DNA polymerase holoenzyme when stopped by a hairpin helix
-
Hacker K.J., Alberts B.M. The rapid dissociation of the T4 DNA polymerase holoenzyme when stopped by a hairpin helix. J. Biol. Chem. 1994, 269:24221-24228.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 24221-24228
-
-
Hacker, K.J.1
Alberts, B.M.2
-
10
-
-
0020545305
-
Bacterial and phage mutations that reveal helix-unwinding activities required for bacteriophage T4 replication
-
Gauss P., Doherty D.H., Gold L. Bacterial and phage mutations that reveal helix-unwinding activities required for bacteriophage T4 replication. Proc. Natl Acad. Sci. USA 1983, 80:1669-1673.
-
(1983)
Proc. Natl Acad. Sci. USA
, vol.80
, pp. 1669-1673
-
-
Gauss, P.1
Doherty, D.H.2
Gold, L.3
-
11
-
-
0023654539
-
Gene 1.2 of bacteriophage T7. Effect on deoxynucleotide pools
-
Meyers J.A., Beauchamp B.H., Richardson C.C. Gene 1.2 of bacteriophage T7. Effect on deoxynucleotide pools. J. Biol. Chem. 1987, 262:5288-5292.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 5288-5292
-
-
Meyers, J.A.1
Beauchamp, B.H.2
Richardson, C.C.3
-
12
-
-
0023855505
-
The purification and properties of deoxyguanosine triphosphate triphosphorhydrolase from Escherichia coli
-
Seto D., Bhatnager S.K., Bessman M.J. The purification and properties of deoxyguanosine triphosphate triphosphorhydrolase from Escherichia coli. J. Biol. Chem. 1988, 263:1494-1499.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 1494-1499
-
-
Seto, D.1
Bhatnager, S.K.2
Bessman, M.J.3
-
13
-
-
28544438811
-
Using 2-aminopurine fluorescence to detect bacteriophage T4 DNA polymerase-DNA complexes that are important for primer extension and proofreading reactions
-
Hariharan C., Reha-Krantz L.J. Using 2-aminopurine fluorescence to detect bacteriophage T4 DNA polymerase-DNA complexes that are important for primer extension and proofreading reactions. Biochemistry 2005, 44:15674-15684.
-
(2005)
Biochemistry
, vol.44
, pp. 15674-15684
-
-
Hariharan, C.1
Reha-Krantz, L.J.2
-
14
-
-
0014687307
-
Spontaneous mutation
-
Drake J., Allen E.F., Forsberg S.A., Preparata R-M., Greening E.O. Spontaneous mutation. Nature 1969, 221:1128-1132.
-
(1969)
Nature
, vol.221
, pp. 1128-1132
-
-
Drake, J.1
Allen, E.F.2
Forsberg, S.A.3
Preparata, R.-M.4
Greening, E.O.5
-
15
-
-
0010321446
-
The spectrum of acridine resistant mutants of bacteriophage T4 reveals cryptic effects of the tsL141 DNA polymerase allele on spontaneous mutagenesis
-
Wang F.J., Ripley L.S. The spectrum of acridine resistant mutants of bacteriophage T4 reveals cryptic effects of the tsL141 DNA polymerase allele on spontaneous mutagenesis. Genetics 1998, 148:1655-1665.
-
(1998)
Genetics
, vol.148
, pp. 1655-1665
-
-
Wang, F.J.1
Ripley, L.S.2
-
16
-
-
0028915013
-
Learning about DNA polymerase function by studying antimutator DNA polymerases
-
Reha-Krantz L.J. Learning about DNA polymerase function by studying antimutator DNA polymerases. Trends Biochem. Sci. 1995, 20:136-140.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 136-140
-
-
Reha-Krantz, L.J.1
-
17
-
-
0027471149
-
General mutators are improbable
-
Drake J.W. General mutators are improbable. J. Mol. Biol. 1993, 229:8-13.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 8-13
-
-
Drake, J.W.1
-
18
-
-
0031894341
-
Antimutator mutants in bacteriophage T4 and Escherichia coli
-
Schaaper R.M. Antimutator mutants in bacteriophage T4 and Escherichia coli. Genetics 1998, 148:1579-1585.
-
(1998)
Genetics
, vol.148
, pp. 1579-1585
-
-
Schaaper, R.M.1
-
19
-
-
0028892405
-
Dynamics of bacteriophage T4 DNA polymerase function: identification of amino acid residues that affect switching between polymerase and 3'→5' exonuclease activities
-
Stocki S.A., Nonay R.L., Reha-Krantz L.J. Dynamics of bacteriophage T4 DNA polymerase function: identification of amino acid residues that affect switching between polymerase and 3'→5' exonuclease activities. J. Mol. Biol. 1995, 254:15-28.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 15-28
-
-
Stocki, S.A.1
Nonay, R.L.2
Reha-Krantz, L.J.3
-
20
-
-
33744458219
-
Kinetics of error generation in homologous B-family DNA polymerases
-
Hogg M., Cooper W., Reha-Krantz L., Wallace S. Kinetics of error generation in homologous B-family DNA polymerases. Nucleic Acids Res. 2006, 34:2528-2535.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 2528-2535
-
-
Hogg, M.1
Cooper, W.2
Reha-Krantz, L.3
Wallace, S.4
-
21
-
-
0027402606
-
Bacteriophage T4 DNA polymerase mutations that confer sensitivity to the PPi analog phosphonoacetic acid
-
Reha-Krantz L.J., Nonay R.L., Stocki S. Bacteriophage T4 DNA polymerase mutations that confer sensitivity to the PPi analog phosphonoacetic acid. J. Virol. 1993, 67:60-66.
-
(1993)
J. Virol.
, vol.67
, pp. 60-66
-
-
Reha-Krantz, L.J.1
Nonay, R.L.2
Stocki, S.3
-
22
-
-
0017105494
-
Mechanisms of phosphonoacetate inhibition of herpes virus-induced DNA polymerase
-
Leinbach S.S., Reno J.M., Lee L.F., Isbell A.F., Boezi J.A. Mechanisms of phosphonoacetate inhibition of herpes virus-induced DNA polymerase. Biochemistry 1976, 15:426-430.
-
(1976)
Biochemistry
, vol.15
, pp. 426-430
-
-
Leinbach, S.S.1
Reno, J.M.2
Lee, L.F.3
Isbell, A.F.4
Boezi, J.A.5
-
23
-
-
0030068319
-
Selection of bacteriophage T4 antimutator DNA polymerases: a link between proofreading and sensitivity to phosphonoacetic acid
-
Reha-Krantz L.J., Wong C. Selection of bacteriophage T4 antimutator DNA polymerases: a link between proofreading and sensitivity to phosphonoacetic acid. Mutat. Res. 1996, 350:9-16.
-
(1996)
Mutat. Res.
, vol.350
, pp. 9-16
-
-
Reha-Krantz, L.J.1
Wong, C.2
-
24
-
-
34047257841
-
The pyrophosphate analogue foscarnet traps the pre-translocated state of the HIV-1 reverse transcriptase in a Brownian ratchet model of polymerase translocation
-
Marchand B., Tchesnokov E.P., Götte M. The pyrophosphate analogue foscarnet traps the pre-translocated state of the HIV-1 reverse transcriptase in a Brownian ratchet model of polymerase translocation. J. Biol. Chem. 2007, 282:3337-3346.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 3337-3346
-
-
Marchand, B.1
Tchesnokov, E.P.2
Götte, M.3
-
25
-
-
0033616725
-
Crystal structure of a thermostable type B DNA polymerase from Thermococcus gorgonarius
-
Hopfner K.-P., Eichinger A., Engh R.A., Laue F., Ankenbauer W., Huber R., et al. Crystal structure of a thermostable type B DNA polymerase from Thermococcus gorgonarius. Proc. Natl Acad. Sci. USA 1999, 96:3600-3605.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 3600-3605
-
-
Hopfner, K.-P.1
Eichinger, A.2
Engh, R.A.3
Laue, F.4
Ankenbauer, W.5
Huber, R.6
-
26
-
-
0034595517
-
Crystal structure of a pol α family DNA polymerase from the hyperthermophilic archaeon Therococcus sp 9° N-7
-
Rodriguez A.C., Park H.W., Mao C., Beese L.S. Crystal structure of a pol α family DNA polymerase from the hyperthermophilic archaeon Therococcus sp 9° N-7. J. Mol. Biol. 2000, 299:447-462.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 447-462
-
-
Rodriguez, A.C.1
Park, H.W.2
Mao, C.3
Beese, L.S.4
-
27
-
-
7944222972
-
Insights into DNA replication: the crystal structure of DNA polymerase B1 from the archaeon Sulfolobus solfataricus
-
Savino C., Federici L., Johnson K.A., Vallone B., Nastapoulos V., Rossi M., et al. Insights into DNA replication: the crystal structure of DNA polymerase B1 from the archaeon Sulfolobus solfataricus. Structure 2004, 12:2001-2008.
-
(2004)
Structure
, vol.12
, pp. 2001-2008
-
-
Savino, C.1
Federici, L.2
Johnson, K.A.3
Vallone, B.4
Nastapoulos, V.5
Rossi, M.6
-
28
-
-
41549108325
-
Crystal structure of Pfu, the high fidelity DNA polymerase from Pyrococcus furiosus
-
Kim S.W., Kim D.U., Kim J.K., Kang L.W., Cho H.S. Crystal structure of Pfu, the high fidelity DNA polymerase from Pyrococcus furiosus. Int. J. Biol. Macromol. 2008, 42:356-361.
-
(2008)
Int. J. Biol. Macromol.
, vol.42
, pp. 356-361
-
-
Kim, S.W.1
Kim, D.U.2
Kim, J.K.3
Kang, L.W.4
Cho, H.S.5
-
29
-
-
33745841864
-
Crystal structure of the herpes simplex virus 1 DNA polymerase
-
Liu S., Knafels J.D., Chang J.S., Waszak G.A., Baldwin E.T., Deibel M.R., et al. Crystal structure of the herpes simplex virus 1 DNA polymerase. J. Biol. Chem. 2006, 281:18193-18200.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 18193-18200
-
-
Liu, S.1
Knafels, J.D.2
Chang, J.S.3
Waszak, G.A.4
Baldwin, E.T.5
Deibel, M.R.6
-
30
-
-
69949128706
-
Structural basis of high-fidelity DNA synthesis by yeast DNA polymerase δ
-
Swan M.K., Johnson R.E., Prakash L., Prakash S., Aggarwal A.K. Structural basis of high-fidelity DNA synthesis by yeast DNA polymerase δ. Nat. Struct. Mol. Biol. 2009, 16:979-986.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 979-986
-
-
Swan, M.K.1
Johnson, R.E.2
Prakash, L.3
Prakash, S.4
Aggarwal, A.K.5
-
31
-
-
72549092945
-
Structural insight into translesion synthesis by DNA pol II
-
Wang F., Yang W. Structural insight into translesion synthesis by DNA pol II. Cell 2009, 139:1279-1289.
-
(2009)
Cell
, vol.139
, pp. 1279-1289
-
-
Wang, F.1
Yang, W.2
-
32
-
-
0032692565
-
Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex
-
Shamoo Y., Steitz T.A. Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex. Cell 1999, 99:155-166.
-
(1999)
Cell
, vol.99
, pp. 155-166
-
-
Shamoo, Y.1
Steitz, T.A.2
-
33
-
-
2342484512
-
Lesion (in)tolerance reveals insights into DNA replication fidelity
-
Freisinger E., Grollman A.P., Miller H., Kisker C. Lesion (in)tolerance reveals insights into DNA replication fidelity. EMBO J. 2004, 23:1494-1505.
-
(2004)
EMBO J.
, vol.23
, pp. 1494-1505
-
-
Freisinger, E.1
Grollman, A.P.2
Miller, H.3
Kisker, C.4
-
34
-
-
2342537864
-
Crystallographic snapshots of a replicative DNA polymerase encountering an abasic site
-
Hogg M., Wallace S.S., Doublié S. Crystallographic snapshots of a replicative DNA polymerase encountering an abasic site. EMBO J. 2004, 23:1483-1493.
-
(2004)
EMBO J.
, vol.23
, pp. 1483-1493
-
-
Hogg, M.1
Wallace, S.S.2
Doublié, S.3
-
35
-
-
0027217643
-
Compilation, alignment, and phylogenetic relationships of DNA polymerases
-
Braithwaite D., Ito J. Compilation, alignment, and phylogenetic relationships of DNA polymerases. Nucleic Acids Res. 1993, 21:787-802.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 787-802
-
-
Braithwaite, D.1
Ito, J.2
-
36
-
-
0032552893
-
Amino acid residues involved in determining the processivity of the 3'-5' exonuclease activity in a family B DNA polymerase from the thermoacidophilic archaeon Sulfolobus solfataricus
-
Pisani F.M., de Felice M., Rossi M. Amino acid residues involved in determining the processivity of the 3'-5' exonuclease activity in a family B DNA polymerase from the thermoacidophilic archaeon Sulfolobus solfataricus. Biochemistry 1998, 37:15005-15012.
-
(1998)
Biochemistry
, vol.37
, pp. 15005-15012
-
-
Pisani, F.M.1
de Felice, M.2
Rossi, M.3
-
37
-
-
15744397563
-
Involvement of the "linker" region between the exonuclease and polymerase domains of the Φ29 DNA polymerase in DNA and TP binding
-
Truniger V., Bonnin A., Lázaro J.M., de Vega M., Salas M. Involvement of the "linker" region between the exonuclease and polymerase domains of the Φ29 DNA polymerase in DNA and TP binding. Gene 2005, 348:89-99.
-
(2005)
Gene
, vol.348
, pp. 89-99
-
-
Truniger, V.1
Bonnin, A.2
Lázaro, J.M.3
de Vega, M.4
Salas, M.5
-
38
-
-
0023754044
-
Amino acid changes coded by bacteriophage T4 DNA polymerase mutator mutants. Relating structure to function
-
Reha-Krantz L.J. Amino acid changes coded by bacteriophage T4 DNA polymerase mutator mutants. Relating structure to function. J. Mol. Biol. 1988, 202:711-724.
-
(1988)
J. Mol. Biol.
, vol.202
, pp. 711-724
-
-
Reha-Krantz, L.J.1
-
39
-
-
33644695073
-
Dynamics of nucleotide incorporation: snapshots revealed by 2-aminopurine studies
-
Hariharan C., Bloom L.B., Helquist S.A., Kool K.T., Reha-Krantz L.J. Dynamics of nucleotide incorporation: snapshots revealed by 2-aminopurine studies. Biochemistry 2006, 45:2836-2844.
-
(2006)
Biochemistry
, vol.45
, pp. 2836-2844
-
-
Hariharan, C.1
Bloom, L.B.2
Helquist, S.A.3
Kool, K.T.4
Reha-Krantz, L.J.5
-
40
-
-
0020048615
-
Are precursors concentrated at replication sites?
-
Mathews C.K., Sinha N.K Are precursors concentrated at replication sites?. Proc. Natl Acad. Sci. USA 1984, 79:302-306.
-
(1984)
Proc. Natl Acad. Sci. USA
, vol.79
, pp. 302-306
-
-
Mathews, C.K.1
Sinha, N.K.2
-
41
-
-
17044427535
-
Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved
-
Zheng W., Brooks B.R., Doniach S., Thirumalai D. Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved. Structure 2005, 13:565-577.
-
(2005)
Structure
, vol.13
, pp. 565-577
-
-
Zheng, W.1
Brooks, B.R.2
Doniach, S.3
Thirumalai, D.4
-
44
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larken M.A., Blackshields G., Brown N.P., Chenna R., McGlettigan P.A., McWilliam H., et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larken, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGlettigan, P.A.5
McWilliam, H.6
-
45
-
-
0030501419
-
Use of non-crystallographic symmetry in protein structure refinement
-
Kleywegt G.J. Use of non-crystallographic symmetry in protein structure refinement. Acta Crystallogr., Sect. D: Biol. Crystallogr. 1996, 52:842-859.
-
(1996)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.52
, pp. 842-859
-
-
Kleywegt, G.J.1
-
46
-
-
77954386045
-
-
Domain interactions in DNA polymerases. M.Sc. Thesis, University of Alberta, Edmonton, Alberta, Canada.
-
Li, V. (2009). Domain interactions in DNA polymerases. M.Sc. Thesis, University of Alberta, Edmonton, Alberta, Canada.
-
(2009)
-
-
Li, V.1
-
47
-
-
0023434015
-
Cloning and expression of T4 DNA polymerase
-
Lin T.C., Rush J., Spicer E.K., Konigsberg W.H. Cloning and expression of T4 DNA polymerase. Proc. Natl Acad. Sci. USA 1987, 84:7000-7005.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 7000-7005
-
-
Lin, T.C.1
Rush, J.2
Spicer, E.K.3
Konigsberg, W.H.4
-
48
-
-
26244438851
-
A single-stage polymerase-based protocol for the introduction of deletions and insertions without subcloning
-
Salerno J.C., Jones R.J., Erdogan E., Smith S.M.E. A single-stage polymerase-based protocol for the introduction of deletions and insertions without subcloning. Mol. Biotechnol. 2005, 29:225-232.
-
(2005)
Mol. Biotechnol.
, vol.29
, pp. 225-232
-
-
Salerno, J.C.1
Jones, R.J.2
Erdogan, E.3
Smith, S.M.E.4
|