메뉴 건너뛰기




Volumn 26, Issue 12, 2010, Pages

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework

Author keywords

[No Author keywords available]

Indexed keywords

DRUG; ION CHANNEL; OPIATE RECEPTOR;

EID: 77954230951     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq176     Document Type: Article
Times cited : (444)

References (40)
  • 1
    • 0037310693 scopus 로고    scopus 로고
    • Inhibition of prostaglandin h2 synthases by salicylate is dependent on the oxidative state of the enzymes
    • Aronoff, D.M. et al. (2003) Inhibition of prostaglandin h2 synthases by salicylate is dependent on the oxidative state of the enzymes. J. Pharamacol. Exp. Thera., 304, 589-595.
    • (2003) J. Pharamacol. Exp. Thera. , vol.304 , pp. 589-595
    • Aronoff, D.M.1
  • 2
    • 0032948111 scopus 로고    scopus 로고
    • Regulation and inhibition of phospholipase
    • Balsinde, J. et al. (1999) Regulation and inhibition of phospholipase. Annu. Rev. Pharmacol. Toxicol., 39, 175-189.
    • (1999) Annu. Rev. Pharmacol. Toxicol. , vol.39 , pp. 175-189
    • Balsinde, J.1
  • 3
    • 69849094133 scopus 로고    scopus 로고
    • Supervised prediction of drug-target interactions using bipartite local models
    • Bleakley, K. and Yamanishi, Y. (2009) Supervised prediction of drug-target interactions using bipartite local models. Bioinformatics, 25, 2397-2403.
    • (2009) Bioinformatics , vol.25 , pp. 2397-2403
    • Bleakley, K.1    Yamanishi, Y.2
  • 4
    • 0017202049 scopus 로고
    • Diflorasone diacetate: vasoconstrictor activity and clinical efficacy of a new topical corticosteroid
    • Bluefarb, S.M. et al. (1976) Diflorasone diacetate: vasoconstrictor activity and clinical efficacy of a new topical corticosteroid. J. Int. Med. Res., 4, 454-461.
    • (1976) J. Int. Med. Res. , vol.4 , pp. 454-461
    • Bluefarb, S.M.1
  • 5
    • 26944463088 scopus 로고    scopus 로고
    • Virtual screen for ligands of orphang protein-coupled receptors
    • Bock, J.R. and Gough, D.A. (2005) Virtual screen for ligands of orphang protein-coupled receptors. J. Chem. Inf. Model, 45, 1402-1414.
    • (2005) J. Chem. Inf. Model , vol.45 , pp. 1402-1414
    • Bock, J.R.1    Gough, D.A.2
  • 6
    • 0036606241 scopus 로고    scopus 로고
    • Predicting ADME properties in silico: methods and models
    • Butina, D. et al. (2002) Predicting ADME properties in silico: methods and models. Drug Discov. Today, 7, S83-S88.
    • (2002) Drug Discov. Today , vol.7
    • Butina, D.1
  • 7
    • 0345548661 scopus 로고    scopus 로고
    • Comparison of support vector machine and articial neural network systems for drug/nondrug classification
    • Byvatov, E. et al. (2003) Comparison of support vector machine and articial neural network systems for drug/nondrug classification. J. Chem. Inf. Comput. Sci., 43, 1882-1889.
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , pp. 1882-1889
    • Byvatov, E.1
  • 8
    • 47249146126 scopus 로고    scopus 로고
    • Drug target identification using side-effect similarity
    • Campillos, M. et al. (2008) Drug target identification using side-effect similarity. Science, 321, 263-266.
    • (2008) Science , vol.321 , pp. 263-266
    • Campillos, M.1
  • 10
    • 0026527160 scopus 로고    scopus 로고
    • Synthesis and preliminary pharmacological study of thiophene analogues of the antipyretic and analgesic agent ethenzamide
    • Darias, V. et al. (2006) Synthesis and preliminary pharmacological study of thiophene analogues of the antipyretic and analgesic agent ethenzamide. Arch. Pharm., 325, 83-87.
    • (2006) Arch. Pharm. , vol.325 , pp. 83-87
    • Darias, V.1
  • 11
    • 11144341956 scopus 로고    scopus 로고
    • Chemical space and biology
    • Dobson, C.M. (2004) Chemical space and biology. Nature, 432, 824-828.
    • (2004) Nature , vol.432 , pp. 824-828
    • Dobson, C.M.1
  • 12
    • 0020607604 scopus 로고
    • Suppression of tumor promoter phorbolmyristate acetate-induced chromosome breakage by antioxidants and inhibitors of arachidonic acid metabolism
    • Emerit, I. et al. (1983) Suppression of tumor promoter phorbolmyristate acetate-induced chromosome breakage by antioxidants and inhibitors of arachidonic acid metabolism. Mutat. Res., 110, 327-335.
    • (1983) Mutat. Res. , vol.110 , pp. 327-335
    • Emerit, I.1
  • 13
    • 33646251586 scopus 로고    scopus 로고
    • Collaborative ltering on a family of biological targets
    • Erhan, D. et al. (2006) Collaborative ltering on a family of biological targets. J. Chem. Inf. Model, 46, 626-635.
    • (2006) J. Chem. Inf. Model , vol.46 , pp. 626-635
    • Erhan, D.1
  • 14
    • 38349114038 scopus 로고    scopus 로고
    • Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor
    • Faulon, J.L et al. (2008) Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor. Bioinformatics, 24, 225-233.
    • (2008) Bioinformatics , vol.24 , pp. 225-233
    • Faulon, J.L.1
  • 15
    • 77951358188 scopus 로고
    • Intravenous salicylamide therapy in rheumatic diseases
    • Frankl, R. (1953) Intravenous salicylamide therapy in rheumatic diseases. Munch. Med. Wochensch., 95, 512-513.
    • (1953) Munch. Med. Wochensch. , vol.95 , pp. 512-513
    • Frankl, R.1
  • 16
    • 0031664462 scopus 로고    scopus 로고
    • Analgesic effect of mofezolac, a non-steroidal anti-inflammatory drug, against phenylquinone-induced acute pain in mice
    • Goto, K. et al. (1998) Analgesic effect of mofezolac, a non-steroidal anti-inflammatory drug, against phenylquinone-induced acute pain in mice. Prostaglandins Other Lipid Mediat., 56, 245-254.
    • (1998) Prostaglandins Other Lipid Mediat , vol.56 , pp. 245-254
    • Goto, K.1
  • 17
    • 0001969211 scopus 로고    scopus 로고
    • Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching
    • Gribskov, M. and Robinson, N.L. (1996) Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching. Comput. Chem., 20, 25-33.
    • (1996) Comput. Chem. , vol.20 , pp. 25-33
    • Gribskov, M.1    Robinson, N.L.2
  • 18
    • 38549182474 scopus 로고    scopus 로고
    • SuperTarget and Matador: resources for exploring drug-target relationships
    • Gunther, S. et al. (2008) SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Res., 36, D919-D922.
    • (2008) Nucleic Acids Res , vol.36
    • Gunther, S.1
  • 19
    • 0141843591 scopus 로고    scopus 로고
    • Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways
    • Hattori, M. et al. (2003) Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways. J. Am. Chem. Soc., 125, 11853-11865.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 11853-11865
    • Hattori, M.1
  • 20
    • 0029597877 scopus 로고
    • Citrus flavone tangeretin inhibits leukaemic hl-60 cell growth partially through induction of apoptosis with less cytotoxicity on normal lymphocytes
    • Hirano, T. et al. (1995) Citrus flavone tangeretin inhibits leukaemic hl-60 cell growth partially through induction of apoptosis with less cytotoxicity on normal lymphocytes. Br. J. Cancer, 72, 1380-1388.
    • (1995) Br. J. Cancer , vol.72 , pp. 1380-1388
    • Hirano, T.1
  • 21
    • 52749085437 scopus 로고    scopus 로고
    • Protein-ligand interaction prediction: an improved chemogenomics approach
    • Jacob, L. and Vert, J.-P. (2008) Protein-ligand interaction prediction: an improved chemogenomics approach. Bioinformatics, 24, 2149-2156.
    • (2008) Bioinformatics , vol.24 , pp. 2149-2156
    • Jacob, L.1    Vert, J.-P.2
  • 22
    • 33644874819 scopus 로고    scopus 로고
    • From genomics to chemical genomics: new developments in KEGG
    • Kanehisa, M. et al. (2006) From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res., 34, D354-357.
    • (2006) Nucleic Acids Res , vol.34
    • Kanehisa, M.1
  • 23
    • 38549126643 scopus 로고    scopus 로고
    • KEGG for linking genomes to life and the environment
    • Kanehisa, M. et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res., 36, D480-D485.
    • (2008) Nucleic Acids Res , vol.36
    • Kanehisa, M.1
  • 24
    • 0019785891 scopus 로고
    • Pharmacokinetics of metildigoxin and digoxin in geriatric patients with normal and elevated serum creatinine levels
    • Kaufmann, B. et al. (1981) Pharmacokinetics of metildigoxin and digoxin in geriatric patients with normal and elevated serum creatinine levels. Clin. Pharmacokinet., 6, 463-468.
    • (1981) Clin. Pharmacokinet. , vol.6 , pp. 463-468
    • Kaufmann, B.1
  • 25
    • 0014524807 scopus 로고
    • Sites and modes of action of antipyretic-analgesic drug
    • Keele.C.A. (1969) Sites and modes of action of antipyretic-analgesic drug. Proc. R. Soc. Med., 62, 535-539.
    • (1969) Proc. R. Soc. Med. , vol.62 , pp. 535-539
    • Keele, C.A.1
  • 27
    • 34548128437 scopus 로고    scopus 로고
    • Nagamine, N. and Sakakibara, Y. (2007) Statistical prediction of protein-chemical interactions based on chemical structure and mass spectrometry data. Bioinformatics, 23, 2004-2012.
    • (2007) Bioinformatics , vol.23 , pp. 2004-2012
    • Nagamine, N.1    Sakakibara, Y.2
  • 28
    • 0024381125 scopus 로고
    • Comparative analgesic and anti-inflammatory properties of sodium salicylate and acetylsalicylic acid (aspirin) in rheumatoid arthritis
    • Preston, S.J. et al. (1989) Comparative analgesic and anti-inflammatory properties of sodium salicylate and acetylsalicylic acid (aspirin) in rheumatoid arthritis. Br. J. Clin. Pharmacol., 27, 607-611.
    • (1989) Br. J. Clin. Pharmacol. , vol.27 , pp. 607-611
    • Preston, S.J.1
  • 29
    • 0030599010 scopus 로고    scopus 로고
    • A fast flexible docking method using an incremental construction algorithm
    • Rarey, M. et al. (1996) A fast flexible docking method using an incremental construction algorithm. J. Mol. Biol., 261, 470-489.
    • (1996) J. Mol. Biol. , vol.261 , pp. 470-489
    • Rarey, M.1
  • 30
    • 65649093070 scopus 로고    scopus 로고
    • Mapping adverse drug reactions in chemical space
    • Scheiber, J. et al. (2009) Mapping adverse drug reactions in chemical space. J. Med. Chem., 52, 3103-3107.
    • (2009) J. Med. Chem. , vol.52 , pp. 3103-3107
    • Scheiber, J.1
  • 31
    • 33845691405 scopus 로고    scopus 로고
    • An open-label adrenal suppression study of 0.1% fluocinonide cream in pediatric patients with atopic dermatitis
    • Schlessinger, J. et al. (2006) An open-label adrenal suppression study of 0.1% fluocinonide cream in pediatric patients with atopic dermatitis. Arch. Dermatol., 142, 1568-1572.
    • (2006) Arch. Dermatol. , vol.142 , pp. 1568-1572
    • Schlessinger, J.1
  • 33
    • 0345863907 scopus 로고    scopus 로고
    • BRENDA, the enzyme database: updates and major new developments
    • Schomburg, I. et al. (2004) BRENDA, the enzyme database: updates and major new developments. Nucleic Acids Res., 32, D431-433.
    • (2004) Nucleic Acids Res , vol.32
    • Schomburg, I.1
  • 34
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T.F and Waterman, M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 35
    • 0034331004 scopus 로고    scopus 로고
    • Chemical genetics: ligand-based discovery of gene function
    • Stockwell, B.R. (2000) Chemical genetics: ligand-based discovery of gene function. Nat. Rev. Genet., 1, 116-125.
    • (2000) Nat. Rev. Genet. , vol.1 , pp. 116-125
    • Stockwell, B.R.1
  • 36
    • 38549151817 scopus 로고    scopus 로고
    • DrugBank: a knowledgebase for drugs, drug actions and drug targets
    • Wishart, D.S. et al. (2008) DrugBank: a knowledgebase for drugs, drug actions and drug targets. Nucleic Acids Res., 36, D901-D906.
    • (2008) Nucleic Acids Res , vol.36
    • Wishart, D.S.1
  • 37
    • 84858775082 scopus 로고    scopus 로고
    • Supervised bipartite graph inference
    • Koller, D. et al. (eds), MIT Press, Cambridge, MA
    • Yamanishi, Y. (2009) Supervised bipartite graph inference. In Koller, D. et al. (eds), Advances in Neural Information Processing Systems 21, MIT Press, Cambridge, MA, pp. 1841-1848.
    • (2009) Advances in Neural Information Processing Systems 21 , pp. 1841-1848
    • Yamanishi, Y.1
  • 38
    • 46249090791 scopus 로고    scopus 로고
    • Prediction of drug-target interaction networks from the integration of chemical and genomic spaces
    • Yamanishi, Y. et al. (2008) Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. Bioinformatics, 24, i232-i240.
    • (2008) Bioinformatics , vol.24
    • Yamanishi, Y.1
  • 39
    • 39449117736 scopus 로고    scopus 로고
    • Injectable actarit-loaded solid lipid nanoparticles as passive targeting therapeutic agents for rheumatoid arthritis
    • Ye, J. et al. (2008) Injectable actarit-loaded solid lipid nanoparticles as passive targeting therapeutic agents for rheumatoid arthritis. Int. J. Pharmaceutics, 352, 273-179.
    • (2008) Int. J. Pharmaceutics , vol.352 , pp. 273-179
    • Ye, J.1
  • 40
    • 35148838537 scopus 로고    scopus 로고
    • Drug-target network
    • Yildirim, M.A. et al. (2007) Drug-target network. Nat. Biotechnol., 25, 1119-1126.
    • (2007) Nat. Biotechnol. , vol.25 , pp. 1119-1126
    • Yildirim, M.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.