-
1
-
-
27944493925
-
Scale-free networks in cell biology
-
Albert R. Scale-free networks in cell biology. J. Cell Sci. 2005, 118:4947-4957.
-
(2005)
J. Cell Sci.
, vol.118
, pp. 4947-4957
-
-
Albert, R.1
-
2
-
-
0034721164
-
Error and attack tolerance of complex networks
-
Albert R, Jeong H, Barabasi AL. Error and attack tolerance of complex networks. Nature 2000, 406:378-382.
-
(2000)
Nature
, vol.406
, pp. 378-382
-
-
Albert, R.1
Jeong, H.2
Barabasi, A.L.3
-
3
-
-
2942612843
-
Ordered cooperative functions of PRMT1, p300, and CARM1 in transcriptional activation by p53
-
An W, Kim J, Roeder RG. Ordered cooperative functions of PRMT1, p300, and CARM1 in transcriptional activation by p53. Cell 2004, 117:735-748.
-
(2004)
Cell
, vol.117
, pp. 735-748
-
-
An, W.1
Kim, J.2
Roeder, R.G.3
-
4
-
-
0026672441
-
Genetic interaction between transcription elongation factor TFIIS and RNA polymerase II
-
Archambault J, Lacroute F, Ruet A, Friesen JD. Genetic interaction between transcription elongation factor TFIIS and RNA polymerase II. Mol. Cell. Biol. 1992, 12:4142-4152.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 4142-4152
-
-
Archambault, J.1
Lacroute, F.2
Ruet, A.3
Friesen, J.D.4
-
5
-
-
0025837183
-
The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix
-
Arents G, Burlingame RW, Wang BC, Love WE, Moudrianakis EN. The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix. Proc. Natl Acad. Sci. USA 1991, 88:10148-10152.
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 10148-10152
-
-
Arents, G.1
Burlingame, R.W.2
Wang, B.C.3
Love, W.E.4
Moudrianakis, E.N.5
-
6
-
-
0027431478
-
Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNA
-
Arents G, Moudrianakis EN. Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNA. Proc. Natl Acad. Sci. USA 1993, 90:10489-10493.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 10489-10493
-
-
Arents, G.1
Moudrianakis, E.N.2
-
7
-
-
10944233962
-
Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair
-
van Attikum H, Fritsch O, Hohn B, Gasser SM. Recruitment of the INO80 complex by H2A phosphorylation links ATP-dependent chromatin remodeling with DNA double-strand break repair. Cell 2004, 119:777-788.
-
(2004)
Cell
, vol.119
, pp. 777-788
-
-
van Attikum, H.1
Fritsch, O.2
Hohn, B.3
Gasser, S.M.4
-
9
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
Barabási AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 2004, 5:101-113.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 101-113
-
-
Barabási, A.L.1
Oltvai, Z.N.2
-
10
-
-
33845666681
-
Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair
-
Botuyan MV, Lee J, Ward IM, Kim JE, Thompson JR, Chen J, Mer G. Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair. Cell 2006, 127:1361-1373.
-
(2006)
Cell
, vol.127
, pp. 1361-1373
-
-
Botuyan, M.V.1
Lee, J.2
Ward, I.M.3
Kim, J.E.4
Thompson, J.R.5
Chen, J.6
Mer, G.7
-
11
-
-
27744577727
-
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
Carrozza MJ, Li B, Florens L, Suganuma T, Swanson SK, Lee KK, Shia WJ, Anderson S, Yates J, Washburn MP, Workman JL. Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 2005, 123:581-592.
-
(2005)
Cell
, vol.123
, pp. 581-592
-
-
Carrozza, M.J.1
Li, B.2
Florens, L.3
Suganuma, T.4
Swanson, S.K.5
Lee, K.K.6
Shia, W.J.7
Anderson, S.8
Yates, J.9
Washburn, M.P.10
Workman, J.L.11
-
12
-
-
33745520486
-
The sirtuins hst3 and Hst4p preserve genome integrity by controlling histone h3 lysine 56 deacetylation
-
Celic I, Masumoto H, Griffith WP, Meluh P, Cotter RJ, Boeke JD, Verreault A. The sirtuins hst3 and Hst4p preserve genome integrity by controlling histone h3 lysine 56 deacetylation. Curr. Biol. 2006, 16:1280-1289.
-
(2006)
Curr. Biol.
, vol.16
, pp. 1280-1289
-
-
Celic, I.1
Masumoto, H.2
Griffith, W.P.3
Meluh, P.4
Cotter, R.J.5
Boeke, J.D.6
Verreault, A.7
-
13
-
-
47549105301
-
Acetylated lysine 56 on histone H3 drives chromatin assembly after repair and signals for the completion of repair
-
Chen CC, Carson JJ, Feser J, Tamburini B, Zabaronick S, Linger J, Tyler JK. Acetylated lysine 56 on histone H3 drives chromatin assembly after repair and signals for the completion of repair. Cell 2008, 134:231-243.
-
(2008)
Cell
, vol.134
, pp. 231-243
-
-
Chen, C.C.1
Carson, J.J.2
Feser, J.3
Tamburini, B.4
Zabaronick, S.5
Linger, J.6
Tyler, J.K.7
-
14
-
-
0036500834
-
Reverse engineering of biological complexity
-
Csete ME, Doyle JC. Reverse engineering of biological complexity. Science 2002, 295:1664-1669.
-
(2002)
Science
, vol.295
, pp. 1664-1669
-
-
Csete, M.E.1
Doyle, J.C.2
-
15
-
-
9144251600
-
Structure and function of the conserved core of histone deposition protein Asf1
-
Daganzo SM, Erzberger JP, Lam WM, Skordalakes E, Zhang R, Franco AA, Brill SJ, Adams PD, Berger JM, Kaufman PD. Structure and function of the conserved core of histone deposition protein Asf1. Curr. Biol. 2003, 13:2148-2158.
-
(2003)
Curr. Biol.
, vol.13
, pp. 2148-2158
-
-
Daganzo, S.M.1
Erzberger, J.P.2
Lam, W.M.3
Skordalakes, E.4
Zhang, R.5
Franco, A.A.6
Brill, S.J.7
Adams, P.D.8
Berger, J.M.9
Kaufman, P.D.10
-
16
-
-
36048958965
-
Histone deacetylase inhibitors: overview and perspectives
-
Dokmanovic M, Clarke C, Marks PA. Histone deacetylase inhibitors: overview and perspectives. Mol. Cancer Res. 2007, 5:981-989.
-
(2007)
Mol. Cancer Res.
, vol.5
, pp. 981-989
-
-
Dokmanovic, M.1
Clarke, C.2
Marks, P.A.3
-
17
-
-
0025736044
-
Yeast histone H4 N-terminal sequence is required for promoter activation in vivo
-
Durrin LK, Mann RK, Kayne PS, Grunstein M. Yeast histone H4 N-terminal sequence is required for promoter activation in vivo. Cell 1991, 65:1023-1031.
-
(1991)
Cell
, vol.65
, pp. 1023-1031
-
-
Durrin, L.K.1
Mann, R.K.2
Kayne, P.S.3
Grunstein, M.4
-
18
-
-
33745686603
-
What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?
-
Ekman D, Light S, Björklund AK, Elofsson A. What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? Genome Biol. 2006, 7:R45.
-
(2006)
Genome Biol.
, vol.7
-
-
Ekman, D.1
Light, S.2
Björklund, A.K.3
Elofsson, A.4
-
19
-
-
0035101733
-
Dynamic interaction of DNA damage checkpoint protein Rad53 with chromatin assembly factor Asf1
-
Emili A, Schieltz DM, Yates JR, Hartwell LH. Dynamic interaction of DNA damage checkpoint protein Rad53 with chromatin assembly factor Asf1. Mol. Cell 2001, 7:13-20.
-
(2001)
Mol. Cell
, vol.7
, pp. 13-20
-
-
Emili, A.1
Schieltz, D.M.2
Yates, J.R.3
Hartwell, L.H.4
-
20
-
-
0026633013
-
6-Azauracil inhibition of GTP biosynthesis in Saccharomyces cerevisiae
-
Exinger F, Lacroute F. 6-Azauracil inhibition of GTP biosynthesis in Saccharomyces cerevisiae. Curr. Genet. 1992, 22:9-11.
-
(1992)
Curr. Genet.
, vol.22
, pp. 9-11
-
-
Exinger, F.1
Lacroute, F.2
-
21
-
-
67949102053
-
Recent progress in the biology and physiology of sirtuins
-
Finkel T, Deng CX, Mostoslavsky R. Recent progress in the biology and physiology of sirtuins. Nature 2009, 460:587-591.
-
(2009)
Nature
, vol.460
, pp. 587-591
-
-
Finkel, T.1
Deng, C.X.2
Mostoslavsky, R.3
-
22
-
-
0037177560
-
Evolutionary rate in the protein interaction network
-
Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW. Evolutionary rate in the protein interaction network. Science 2002, 296:750-752.
-
(2002)
Science
, vol.296
, pp. 750-752
-
-
Fraser, H.B.1
Hirsh, A.E.2
Steinmetz, L.M.3
Scharfe, C.4
Feldman, M.W.5
-
23
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever G, Chu AM, Ni L. Functional profiling of the Saccharomyces cerevisiae genome. Nature 2002, 418:387-391.
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
-
24
-
-
1842578986
-
Molecular evolution of the histone deacetylase family: functional implications of phylogenetic analysis
-
Gregoretti IV, Lee YM, Goodson HV. Molecular evolution of the histone deacetylase family: functional implications of phylogenetic analysis. J. Mol. Biol. 2004, 338:17-31.
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 17-31
-
-
Gregoretti, I.V.1
Lee, Y.M.2
Goodson, H.V.3
-
25
-
-
0036947243
-
Immunosuppressant-like effects of phenylbutyrate on growth inhibition of Saccharomyces cerevisiae
-
Grzanowski A, Needleman R, Brusilow WS. Immunosuppressant-like effects of phenylbutyrate on growth inhibition of Saccharomyces cerevisiae. Curr. Genet. 2002, 41:142-149.
-
(2002)
Curr. Genet.
, vol.41
, pp. 142-149
-
-
Grzanowski, A.1
Needleman, R.2
Brusilow, W.S.3
-
26
-
-
33845868198
-
Sirtuins as potential targets for metabolic syndrome
-
Guarente L. Sirtuins as potential targets for metabolic syndrome. Nature 2006, 444:868-874.
-
(2006)
Nature
, vol.444
, pp. 868-874
-
-
Guarente, L.1
-
27
-
-
57749170458
-
The many roles of histone deacetylases in development and physiology: implications for disease and therapy
-
Haberland M, Montgomery RL, Olson EN. The many roles of histone deacetylases in development and physiology: implications for disease and therapy. Nat. Rev. Genet. 2009, 10:32-42.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 32-42
-
-
Haberland, M.1
Montgomery, R.L.2
Olson, E.N.3
-
28
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
Han JD, Bertin N, Hao T, Goldberg DS, Berriz GF, Zhang LV, Dupuy D, Walhout AJ, Cusick ME, Roth FP, Vidal M. Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 2004, 430:88-93.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.D.1
Bertin, N.2
Hao, T.3
Goldberg, D.S.4
Berriz, G.F.5
Zhang, L.V.6
Dupuy, D.7
Walhout, A.J.8
Cusick, M.E.9
Roth, F.P.10
Vidal, M.11
-
29
-
-
0024472603
-
A receptor for the immunosuppressant FK506 is a cis-trans peptidyl-prolyl isomerase
-
Harding MW, Galat A, Uehling DE, Schreiber SL. A receptor for the immunosuppressant FK506 is a cis-trans peptidyl-prolyl isomerase. Nature 1989, 341:758-760.
-
(1989)
Nature
, vol.341
, pp. 758-760
-
-
Harding, M.W.1
Galat, A.2
Uehling, D.E.3
Schreiber, S.L.4
-
30
-
-
67649476233
-
Theoretical framework for the histone modification network: modifications in the unstructured histone tails form a robust scale-free network
-
Hayashi Y, Senda T, Sano N, Horikoshi M. Theoretical framework for the histone modification network: modifications in the unstructured histone tails form a robust scale-free network. Genes Cells 2009, 14:789-806.
-
(2009)
Genes Cells
, vol.14
, pp. 789-806
-
-
Hayashi, Y.1
Senda, T.2
Sano, N.3
Horikoshi, M.4
-
31
-
-
0032725567
-
Relationship between the subcellular localization and structures of catalytic domains of FKBP-type PPIases
-
Himukai R, Kuzuhara T, Horikoshi M. Relationship between the subcellular localization and structures of catalytic domains of FKBP-type PPIases. J. Biochem. 1999, 126:879-888.
-
(1999)
J. Biochem.
, vol.126
, pp. 879-888
-
-
Himukai, R.1
Kuzuhara, T.2
Horikoshi, M.3
-
32
-
-
0023732753
-
Mechanism of action of a yeast activator: direct effect of GAL4 derivatives on mammalian TFIID-promoter interactions
-
Horikoshi M, Carey MF, Kakidani H, Roeder RG. Mechanism of action of a yeast activator: direct effect of GAL4 derivatives on mammalian TFIID-promoter interactions. Cell 1988, 54:665-669.
-
(1988)
Cell
, vol.54
, pp. 665-669
-
-
Horikoshi, M.1
Carey, M.F.2
Kakidani, H.3
Roeder, R.G.4
-
33
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong H, Mason SP, Barabási AL, Oltvai ZN. Lethality and centrality in protein networks. Nature 2001, 411:41-42.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabási, A.L.3
Oltvai, Z.N.4
-
34
-
-
35548986309
-
Regulation of cell cycle progression and gene expression by H2A deubiquitination
-
Joo HY, Zhai L, Yang C, Nie S, Erdjument-Bromage H, Tempst P, Chang C, Wang H. Regulation of cell cycle progression and gene expression by H2A deubiquitination. Nature 2007, 449:1068-1072.
-
(2007)
Nature
, vol.449
, pp. 1068-1072
-
-
Joo, H.Y.1
Zhai, L.2
Yang, C.3
Nie, S.4
Erdjument-Bromage, H.5
Tempst, P.6
Chang, C.7
Wang, H.8
-
35
-
-
65249105512
-
RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells
-
Kim J, Guermah M, McGinty RK, Lee JS, Tang Z, Milne TA, Shilatifard A, Muir TW, Roeder RG. RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells. Cell 2009, 137:459-471.
-
(2009)
Cell
, vol.137
, pp. 459-471
-
-
Kim, J.1
Guermah, M.2
McGinty, R.K.3
Lee, J.S.4
Tang, Z.5
Milne, T.A.6
Shilatifard, A.7
Muir, T.W.8
Roeder, R.G.9
-
36
-
-
32944469082
-
A decade of histone acetylation: marking eukaryotic chromosomes with specific codes
-
Kimura A, Matsubara K, Horikoshi M. A decade of histone acetylation: marking eukaryotic chromosomes with specific codes. J. Biochem. 2005, 138:647-662.
-
(2005)
J. Biochem.
, vol.138
, pp. 647-662
-
-
Kimura, A.1
Matsubara, K.2
Horikoshi, M.3
-
37
-
-
0036843170
-
Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing
-
Kimura A, Umehara T, Horikoshi M. Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing. Nat. Genet. 2002, 32:370-377.
-
(2002)
Nat. Genet.
, vol.32
, pp. 370-377
-
-
Kimura, A.1
Umehara, T.2
Horikoshi, M.3
-
38
-
-
0036500993
-
Systems biology: a brief overview
-
Kitano H. Systems biology: a brief overview. Science 2002, 295:1662-1664.
-
(2002)
Science
, vol.295
, pp. 1662-1664
-
-
Kitano, H.1
-
39
-
-
0016221697
-
Chromatin structure: a repeating unit of histones and DNA
-
Kornberg RD. Chromatin structure: a repeating unit of histones and DNA. Science 1974, 184:868-871.
-
(1974)
Science
, vol.184
, pp. 868-871
-
-
Kornberg, R.D.1
-
40
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides T. Chromatin modifications and their function. Cell 2007, 128:693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
41
-
-
0037979272
-
Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II
-
Krogan NJ, Kim M, Tong A, Golshani A, Cagney G, Canadien V, Richards DP, Beattie BK, Emili A, Boone C, Shilatifard A, Buratowski S, Greenblatt J. Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II. Mol. Cell. Biol. 2003, 23:4207-4218.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 4207-4218
-
-
Krogan, N.J.1
Kim, M.2
Tong, A.3
Golshani, A.4
Cagney, G.5
Canadien, V.6
Richards, D.P.7
Beattie, B.K.8
Emili, A.9
Boone, C.10
Shilatifard, A.11
Buratowski, S.12
Greenblatt, J.13
-
42
-
-
1442286922
-
A nuclear FK506-binding protein is a histone chaperone regulating rDNA silencing
-
Kuzuhara T, Horikoshi M. A nuclear FK506-binding protein is a histone chaperone regulating rDNA silencing. Nat. Struct. Mol. Biol. 2004, 11:275-283.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 275-283
-
-
Kuzuhara, T.1
Horikoshi, M.2
-
43
-
-
0037672689
-
An epigenetic road map for histone lysine methylation
-
Lachner M, O'Sullivan RJ, Jenuwein T. An epigenetic road map for histone lysine methylation. J. Cell Sci. 2003, 116:2117-2124.
-
(2003)
J. Cell Sci.
, vol.116
, pp. 2117-2124
-
-
Lachner, M.1
O'Sullivan, R.J.2
Jenuwein, T.3
-
44
-
-
0030862060
-
Two new S-phase-specific genes from Saccharomyces cerevisiae
-
Le S, Davis C, Konopka JB, Sternglanz R. Two new S-phase-specific genes from Saccharomyces cerevisiae. Yeast 1997, 13:1029-1042.
-
(1997)
Yeast
, vol.13
, pp. 1029-1042
-
-
Le, S.1
Davis, C.2
Konopka, J.B.3
Sternglanz, R.4
-
45
-
-
36849046285
-
Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS
-
Lee JS, Shukla A, Schneider J, Swanson SK, Washburn MP, Florens L, Bhaumik SR, Shilatifard A. Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS. Cell 2007, 131:1084-1096.
-
(2007)
Cell
, vol.131
, pp. 1084-1096
-
-
Lee, J.S.1
Shukla, A.2
Schneider, J.3
Swanson, S.K.4
Washburn, M.P.5
Florens, L.6
Bhaumik, S.R.7
Shilatifard, A.8
-
46
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee TI, Rinaldi NJ, Robert F. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 2002, 298:799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
-
47
-
-
76749150088
-
Asf1 can promote trimethylation of H3 K36 by Set2
-
Lin LJ, Minard LV, Johnston GC, Singer RA, Schultz MC. Asf1 can promote trimethylation of H3 K36 by Set2. Mol. Cell. Biol. 2010, 30:1116-1129.
-
(2010)
Mol. Cell. Biol.
, vol.30
, pp. 1116-1129
-
-
Lin, L.J.1
Minard, L.V.2
Johnston, G.C.3
Singer, R.A.4
Schultz, M.C.5
-
48
-
-
0029878216
-
Yeast histone H3 and H4 amino termini are important for nucleosome assembly in vivo and in vitro: redundant and position-independent functions in assembly but not in gene regulation
-
Ling X, Harkness TA, Schultz MC, Fisher-Adams G, Grunstein M. Yeast histone H3 and H4 amino termini are important for nucleosome assembly in vivo and in vitro: redundant and position-independent functions in assembly but not in gene regulation. Genes Dev. 1996, 10:686-699.
-
(1996)
Genes Dev.
, vol.10
, pp. 686-699
-
-
Ling, X.1
Harkness, T.A.2
Schultz, M.C.3
Fisher-Adams, G.4
Grunstein, M.5
-
49
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 Å resolution
-
Luger K, Mäder AW, Richmond RK, Sargent DF, Richmond TJ. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 1997, 389:251-260.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mäder, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
50
-
-
22444448143
-
A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response
-
Masumoto H, Hawke D, Kobayashi R, Verreault A. A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response. Nature 2005, 436:294-298.
-
(2005)
Nature
, vol.436
, pp. 294-298
-
-
Masumoto, H.1
Hawke, D.2
Kobayashi, R.3
Verreault, A.4
-
51
-
-
33845880445
-
Global analysis of functional surfaces of core histones with comprehensive point mutants
-
Matsubara K, Sano N, Umehara T, Horikoshi M. Global analysis of functional surfaces of core histones with comprehensive point mutants. Genes Cells 2007, 12:13-33.
-
(2007)
Genes Cells
, vol.12
, pp. 13-33
-
-
Matsubara, K.1
Sano, N.2
Umehara, T.3
Horikoshi, M.4
-
52
-
-
58149333884
-
Pnc1p-mediated nicotinamide clearance modifies the epigenetic properties of rDNA silencing in Saccharomyces cerevisiae
-
McClure JM, Gallo CM, Smith DL, Matecic M, Hontz RD, Buck SW, Racette FG, Smith JS. Pnc1p-mediated nicotinamide clearance modifies the epigenetic properties of rDNA silencing in Saccharomyces cerevisiae. Genetics 2008, 180:797-810.
-
(2008)
Genetics
, vol.180
, pp. 797-810
-
-
McClure, J.M.1
Gallo, C.M.2
Smith, D.L.3
Matecic, M.4
Hontz, R.D.5
Buck, S.W.6
Racette, F.G.7
Smith, J.S.8
-
53
-
-
33645002813
-
Acetylation of H2AZ Lys 14 is associated with genome-wide gene activity in yeast
-
Millar CB, Xu F, Zhang K, Grunstein M. Acetylation of H2AZ Lys 14 is associated with genome-wide gene activity in yeast. Genes Dev. 2006, 20:711-722.
-
(2006)
Genes Dev.
, vol.20
, pp. 711-722
-
-
Millar, C.B.1
Xu, F.2
Zhang, K.3
Grunstein, M.4
-
54
-
-
30344477367
-
Histone deacetylase inhibitors and the promise of epigenetic (and more) treatments for cancer
-
Minucci S, Pelicci PG. Histone deacetylase inhibitors and the promise of epigenetic (and more) treatments for cancer. Nat. Rev. Cancer 2006, 6:38-51.
-
(2006)
Nat. Rev. Cancer
, vol.6
, pp. 38-51
-
-
Minucci, S.1
Pelicci, P.G.2
-
55
-
-
34548569327
-
Diverse roles for histone H2A modifications in DNA damage response pathways in yeast
-
Moore JD, Yazgan O, Ataian Y, Krebs JE. Diverse roles for histone H2A modifications in DNA damage response pathways in yeast. Genetics 2007, 176:15-25.
-
(2007)
Genetics
, vol.176
, pp. 15-25
-
-
Moore, J.D.1
Yazgan, O.2
Ataian, Y.3
Krebs, J.E.4
-
56
-
-
20944440841
-
Structural basis for the interaction of Asf1 with histone H3 and its functional implications
-
Mousson F, Lautrette A, Thuret JY, Agez M, Courbeyrette G, Amigues B, Becker E, Neumann JM, Guerois R, Mann C, Ochsenbein FO. Structural basis for the interaction of Asf1 with histone H3 and its functional implications. Proc. Natl Acad. Sci. USA 2005, 102:5975-5980.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 5975-5980
-
-
Mousson, F.1
Lautrette, A.2
Thuret, J.Y.3
Agez, M.4
Courbeyrette, G.5
Amigues, B.6
Becker, E.7
Neumann, J.M.8
Guerois, R.9
Mann, C.10
Ochsenbein, F.O.11
-
57
-
-
0034100123
-
A human homologue of yeast anti-silencing factor has histone chaperone activity
-
Munakata T, Adachi N, Yokoyama N, Kuzuhara T, Horikoshi M. A human homologue of yeast anti-silencing factor has histone chaperone activity. Genes Cells 2000, 5:221-233.
-
(2000)
Genes Cells
, vol.5
, pp. 221-233
-
-
Munakata, T.1
Adachi, N.2
Yokoyama, N.3
Kuzuhara, T.4
Horikoshi, M.5
-
58
-
-
1542320757
-
Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions
-
Muthurajan UM, Bao Y, Forsberg LJ, Edayathumangalam RS, Dyer PN, White CL, Luger K. Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions. EMBO J. 2004, 23:260-271.
-
(2004)
EMBO J.
, vol.23
, pp. 260-271
-
-
Muthurajan, U.M.1
Bao, Y.2
Forsberg, L.J.3
Edayathumangalam, R.S.4
Dyer, P.N.5
White, C.L.6
Luger, K.7
-
59
-
-
38149081168
-
Deubiquitylation of histone H2A activates transcriptional initiation via trans-histone cross-talk with H3K4 di- and trimethylation
-
Nakagawa T, Kajitani T, Togo S, Masuko N, Ohdan H, Hishikawa Y, Koji T, Matsuyama T, Ikura T, Muramatsu M, Ito T. Deubiquitylation of histone H2A activates transcriptional initiation via trans-histone cross-talk with H3K4 di- and trimethylation. Genes Dev. 2008, 22:37-49.
-
(2008)
Genes Dev.
, vol.22
, pp. 37-49
-
-
Nakagawa, T.1
Kajitani, T.2
Togo, S.3
Masuko, N.4
Ohdan, H.5
Hishikawa, Y.6
Koji, T.7
Matsuyama, T.8
Ikura, T.9
Muramatsu, M.10
Ito, T.11
-
60
-
-
33847226680
-
Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4
-
Natsume R, Eitoku M, Akai Y, Sano N, Horikoshi M, Senda T. Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4. Nature 2007, 446:338-341.
-
(2007)
Nature
, vol.446
, pp. 338-341
-
-
Natsume, R.1
Eitoku, M.2
Akai, Y.3
Sano, N.4
Horikoshi, M.5
Senda, T.6
-
61
-
-
33748163064
-
Proline isomerization of histone H3 regulates lysine methylation and gene expression
-
Nelson CJ, Santos-Rosa H, Kouzarides T. Proline isomerization of histone H3 regulates lysine methylation and gene expression. Cell 2006, 126:905-916.
-
(2006)
Cell
, vol.126
, pp. 905-916
-
-
Nelson, C.J.1
Santos-Rosa, H.2
Kouzarides, T.3
-
62
-
-
18444392703
-
PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin
-
Nishioka K, Rice JC, Sarma K, Erdjument-Bromage H, Werner J, Wang Y, Chuikov S, Valenzuela P, Tempst P, Steward R, Lis JT, Allis CD, Reinberg D. PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin. Mol. Cell 2002, 9:1201-1213.
-
(2002)
Mol. Cell
, vol.9
, pp. 1201-1213
-
-
Nishioka, K.1
Rice, J.C.2
Sarma, K.3
Erdjument-Bromage, H.4
Werner, J.5
Wang, Y.6
Chuikov, S.7
Valenzuela, P.8
Tempst, P.9
Steward, R.10
Lis, J.T.11
Allis, C.D.12
Reinberg, D.13
-
63
-
-
0037174638
-
Systems biology. Life's complexity pyramid
-
Oltvai ZN, Barabási AL. Systems biology. Life's complexity pyramid. Science 2002, 298:763-764.
-
(2002)
Science
, vol.298
, pp. 763-764
-
-
Oltvai, Z.N.1
Barabási, A.L.2
-
64
-
-
32944477758
-
Structural similarity between histone chaperone Cia1p/Asf1p and DNA-binding protein NF-κB
-
Padmanabhan B, Kataoka K, Umehara T, Adachi N, Yokoyama S, Horikoshi M. Structural similarity between histone chaperone Cia1p/Asf1p and DNA-binding protein NF-κB. J. Biochem. (Tokyo) 2005, 138:821-829.
-
(2005)
J. Biochem. (Tokyo)
, vol.138
, pp. 821-829
-
-
Padmanabhan, B.1
Kataoka, K.2
Umehara, T.3
Adachi, N.4
Yokoyama, S.5
Horikoshi, M.6
-
65
-
-
35649016107
-
Regulation of gene transcription by the histone H2A N-terminal domain
-
Parra MA, Wyrick JJ. Regulation of gene transcription by the histone H2A N-terminal domain. Mol. Cell. Biol. 2007, 27:7641-7648.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 7641-7648
-
-
Parra, M.A.1
Wyrick, J.J.2
-
66
-
-
33646691283
-
Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II
-
Pavri R, Zhu B, Li G, Trojer P, Mandal S, Shilatifard A, Reinberg D. Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II. Cell 2006, 125:703-717.
-
(2006)
Cell
, vol.125
, pp. 703-717
-
-
Pavri, R.1
Zhu, B.2
Li, G.3
Trojer, P.4
Mandal, S.5
Shilatifard, A.6
Reinberg, D.7
-
67
-
-
0017409010
-
Isolation and characterization of MMS-sensitive mutants of Saccharomyces cerevisiae
-
Prakash L, Prakash S. Isolation and characterization of MMS-sensitive mutants of Saccharomyces cerevisiae. Genetics 1977, 86:33-55.
-
(1977)
Genetics
, vol.86
, pp. 33-55
-
-
Prakash, L.1
Prakash, S.2
-
68
-
-
13444267442
-
Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation
-
Pray-Grant MG, Daniel JA, Schieltz D, Yates JR, Grant PA. Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation. Nature 2005, 433:434-438.
-
(2005)
Nature
, vol.433
, pp. 434-438
-
-
Pray-Grant, M.G.1
Daniel, J.A.2
Schieltz, D.3
Yates, J.R.4
Grant, P.A.5
-
69
-
-
0023683667
-
How eukaryotic transcriptional activators work
-
Ptashne M. How eukaryotic transcriptional activators work. Nature 1988, 335:683-689.
-
(1988)
Nature
, vol.335
, pp. 683-689
-
-
Ptashne, M.1
-
70
-
-
0034695456
-
Rad6-dependent ubiquitination of histone H2B in yeast
-
Robzyk K, Recht J, Osley MA. Rad6-dependent ubiquitination of histone H2B in yeast. Science 2000, 287:501-504.
-
(2000)
Science
, vol.287
, pp. 501-504
-
-
Robzyk, K.1
Recht, J.2
Osley, M.A.3
-
71
-
-
50549209851
-
Hydroxyurea: a specific inhibitor of deoxyribonucleic acid synthesis
-
Rosenkranz HS, Levy JA. Hydroxyurea: a specific inhibitor of deoxyribonucleic acid synthesis. Biochim. Biophys. Acta 1965, 95:181-183.
-
(1965)
Biochim. Biophys. Acta
, vol.95
, pp. 181-183
-
-
Rosenkranz, H.S.1
Levy, J.A.2
-
72
-
-
70450171572
-
Global analysis of mutual interaction surfaces of nucleosomes with comprehensive point mutants
-
Sakamoto M, Noguchi S, Kawashima S, Okada Y, Enomoto T, Seki M, Horikoshi M. Global analysis of mutual interaction surfaces of nucleosomes with comprehensive point mutants. Genes Cells 2009, 14:1271-1330.
-
(2009)
Genes Cells
, vol.14
, pp. 1271-1330
-
-
Sakamoto, M.1
Noguchi, S.2
Kawashima, S.3
Okada, Y.4
Enomoto, T.5
Seki, M.6
Horikoshi, M.7
-
73
-
-
8844248619
-
Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage
-
Sanders SL, Portoso M, Mata J, Bähler J, Allshire RC, Kouzarides T. Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage. Cell 2004, 119:603-614.
-
(2004)
Cell
, vol.119
, pp. 603-614
-
-
Sanders, S.L.1
Portoso, M.2
Mata, J.3
Bähler, J.4
Allshire, R.C.5
Kouzarides, T.6
-
74
-
-
0022500042
-
Yeast histone H2A and H2B amino termini have interchangeable functions
-
Schuster T, Han M, Grunstein M. Yeast histone H2A and H2B amino termini have interchangeable functions. Cell 1986, 45:445-451.
-
(1986)
Cell
, vol.45
, pp. 445-451
-
-
Schuster, T.1
Han, M.2
Grunstein, M.3
-
75
-
-
0024556318
-
Monofunctional alkylating agentinduced S-phase-dependent DNA damage
-
Schwartz JL. Monofunctional alkylating agentinduced S-phase-dependent DNA damage. Mutat. Res. 1989, 216:111-118.
-
(1989)
Mutat. Res.
, vol.216
, pp. 111-118
-
-
Schwartz, J.L.1
-
76
-
-
34547890019
-
Functions of site-specific histone acetylation and deacetylation
-
Shahbazian MD, Grunstein M. Functions of site-specific histone acetylation and deacetylation. Annu. Rev. Biochem. 2007, 76:75-100.
-
(2007)
Annu. Rev. Biochem.
, vol.76
, pp. 75-100
-
-
Shahbazian, M.D.1
Grunstein, M.2
-
77
-
-
33745868054
-
ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression
-
Shi X, Hong T, Walter KL. ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature 2006, 442:96-99.
-
(2006)
Nature
, vol.442
, pp. 96-99
-
-
Shi, X.1
Hong, T.2
Walter, K.L.3
-
78
-
-
0024442393
-
A cytosolic binding protein for the immunosuppressant FK506 has peptidyl-prolyl isomerase activity but is distinct from cyclophilin
-
Siekierka JJ, Hung SH, Poe M, Lin CS, Sigal NH. A cytosolic binding protein for the immunosuppressant FK506 has peptidyl-prolyl isomerase activity but is distinct from cyclophilin. Nature 1989, 341:755-757.
-
(1989)
Nature
, vol.341
, pp. 755-757
-
-
Siekierka, J.J.1
Hung, S.H.2
Poe, M.3
Lin, C.S.4
Sigal, N.H.5
-
79
-
-
0024291679
-
Transcriptional activation. Acid blobs and negative noodles
-
Sigler PB. Transcriptional activation. Acid blobs and negative noodles. Nature 1988, 333:210-212.
-
(1988)
Nature
, vol.333
, pp. 210-212
-
-
Sigler, P.B.1
-
80
-
-
0021659582
-
Effects of Ty insertions on HIS4 transcription in Saccharomyces cerevisiae
-
Silverman SJ, Fink GR. Effects of Ty insertions on HIS4 transcription in Saccharomyces cerevisiae. Mol. Cell. Biol. 1984, 4:1246-1251.
-
(1984)
Mol. Cell. Biol.
, vol.4
, pp. 1246-1251
-
-
Silverman, S.J.1
Fink, G.R.2
-
81
-
-
0022292635
-
In vitro mutagenesis
-
Smith M. In vitro mutagenesis. Annu. Rev. Genet. 1985, 19:423-462.
-
(1985)
Annu. Rev. Genet.
, vol.19
, pp. 423-462
-
-
Smith, M.1
-
82
-
-
0036842129
-
Sir2p and Sas2p opposingly regulate acetylation of yeast histone H4 lysine16 and spreading of heterochromatin
-
Suka N, Luo K, Grunstein M. Sir2p and Sas2p opposingly regulate acetylation of yeast histone H4 lysine16 and spreading of heterochromatin. Nat. Genet. 2002, 32:378-383.
-
(2002)
Nat. Genet.
, vol.32
, pp. 378-383
-
-
Suka, N.1
Luo, K.2
Grunstein, M.3
-
83
-
-
33751527233
-
Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs
-
Taverna SD, Ilin S, Rogers RS, Tanny JC, Lavender H, Li H, Baker L, Boyle J, Blair LP, Chait BT, Patel DJ, Aitchison JD, Tackett AJ, Allis CD. Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs. Mol. Cell 2006, 24:785-796.
-
(2006)
Mol. Cell
, vol.24
, pp. 785-796
-
-
Taverna, S.D.1
Ilin, S.2
Rogers, R.S.3
Tanny, J.C.4
Lavender, H.5
Li, H.6
Baker, L.7
Boyle, J.8
Blair, L.P.9
Chait, B.T.10
Patel, D.J.11
Aitchison, J.D.12
Tackett, A.J.13
Allis, C.D.14
-
84
-
-
0016729499
-
Hydroxyurea
-
Timson J. Hydroxyurea. Mutat. Res. 1975, 32:115-132.
-
(1975)
Mutat. Res.
, vol.32
, pp. 115-132
-
-
Timson, J.1
-
85
-
-
0033518179
-
The RCAF complex mediates chromatin assembly during DNA replication and repair
-
Tyler JK, Adams CR, Chen SR, Kobayashi R, Kamakaka RT, Kadonaga JT. The RCAF complex mediates chromatin assembly during DNA replication and repair. Nature 1999, 402:555-560.
-
(1999)
Nature
, vol.402
, pp. 555-560
-
-
Tyler, J.K.1
Adams, C.R.2
Chen, S.R.3
Kobayashi, R.4
Kamakaka, R.T.5
Kadonaga, J.T.6
-
86
-
-
0035903534
-
Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions
-
White CL, Suto RK, Luger K. Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions. EMBO J. 2001, 20:5207-5218.
-
(2001)
EMBO J.
, vol.20
, pp. 5207-5218
-
-
White, C.L.1
Suto, R.K.2
Luger, K.3
-
87
-
-
0032749078
-
Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm
-
Wright PE, Dyson HJ. Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. J. Mol. Biol. 1999, 293:321-331.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
88
-
-
33845726097
-
Methylating agents and DNA repair responses: methylated bases and sources of strand breaks
-
Wyatt MD, Pittman DL. Methylating agents and DNA repair responses: methylated bases and sources of strand breaks. Chem. Res. Toxicol. 2006, 19:1580-1594.
-
(2006)
Chem. Res. Toxicol.
, vol.19
, pp. 1580-1594
-
-
Wyatt, M.D.1
Pittman, D.L.2
-
89
-
-
0035116375
-
SPT genes: key players in the regulation of transcription, chromatin structure and other cellular processes
-
Yamaguchi Y, Narita T, Inukai N, Wada T, Handa H. SPT genes: key players in the regulation of transcription, chromatin structure and other cellular processes. J. Biochem. 2001, 129:185-191.
-
(2001)
J. Biochem.
, vol.129
, pp. 185-191
-
-
Yamaguchi, Y.1
Narita, T.2
Inukai, N.3
Wada, T.4
Handa, H.5
-
90
-
-
0026566679
-
A bipartite DNA binding domain composed of direct repeats in the TATA box binding factor TFIID
-
Yamamoto T, Horikoshi M, Wang J, Hasegawa S, Weil PA, Roeder RG. A bipartite DNA binding domain composed of direct repeats in the TATA box binding factor TFIID. Proc. Natl Acad. Sci. USA 1992, 89:2844-2848.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 2844-2848
-
-
Yamamoto, T.1
Horikoshi, M.2
Wang, J.3
Hasegawa, S.4
Weil, P.A.5
Roeder, R.G.6
-
91
-
-
39749127166
-
The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men
-
Yang XJ, Seto E. The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men. Nat. Rev. Mol. Cell Biol. 2008, 9:206-218.
-
(2008)
Nat. Rev. Mol. Cell Biol.
, vol.9
, pp. 206-218
-
-
Yang, X.J.1
Seto, E.2
-
92
-
-
15944416371
-
Histone H4 lysine 91 acetylation a core domain modification associated with chromatin assembly
-
Ye J, Ai X, Eugeni EE, Zhang L, Carpenter LR, Jelinekm MA, Freitas MA, Parthun MR. Histone H4 lysine 91 acetylation a core domain modification associated with chromatin assembly. Mol. Cell 2005, 18:123-130.
-
(2005)
Mol. Cell
, vol.18
, pp. 123-130
-
-
Ye, J.1
Ai, X.2
Eugeni, E.E.3
Zhang, L.4
Carpenter, L.R.5
Jelinekm, M.A.6
Freitas, M.A.7
Parthun, M.R.8
-
93
-
-
0141483484
-
Identification of novel histone post-translational modifications by peptide mass fingerprinting
-
Zhang L, Eugeni EE, Parthun MR, Freitas MA. Identification of novel histone post-translational modifications by peptide mass fingerprinting. Chromosoma 2003, 112:77-86.
-
(2003)
Chromosoma
, vol.112
, pp. 77-86
-
-
Zhang, L.1
Eugeni, E.E.2
Parthun, M.R.3
Freitas, M.A.4
-
94
-
-
23244448558
-
The PHD finger/bromodomain of NoRC interacts with acetylated histone H4K16 and is sufficient for rDNA silencing
-
Zhou Y, Grummt I. The PHD finger/bromodomain of NoRC interacts with acetylated histone H4K16 and is sufficient for rDNA silencing. Curr. Biol. 2005, 15:1434-1438.
-
(2005)
Curr. Biol.
, vol.15
, pp. 1434-1438
-
-
Zhou, Y.1
Grummt, I.2
-
95
-
-
70149112313
-
Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation
-
Zippo A, Serafini R, Rocchigiani M, Pennacchini S, Krepelova A, Oliviero S. Histone crosstalk between H3S10ph and H4K16ac generates a histone code that mediates transcription elongation. Cell 2009, 138:1122-1136.
-
(2009)
Cell
, vol.138
, pp. 1122-1136
-
-
Zippo, A.1
Serafini, R.2
Rocchigiani, M.3
Pennacchini, S.4
Krepelova, A.5
Oliviero, S.6
|