Bacteriochlorophyll and community structure of aerobic anoxygenic phototrophic bacteria in a particle-rich estuary

ISME Journal

Volumn 4, Issue 7, 2010, Pages 945-954

  Cottrell, Matthew T ^a   Ras, Josephine ^b   Kirchman, David L ^a  

^a UNIVERSITY OF DELAWARE   (United States)

^b LABORATOIRE D OCÉANOGRAPHIE DE VILLEFRANCHE   (France)

Author keywords

AAP bacteria; bacteriochlorophyll; Chesapeake Bay; photoheterotrophy

Indexed keywords

BACTERIAL PROTEIN; BACTERIOCHLOROPHYLL A; PUFM PROTEIN, BACTERIA; SEA WATER; PARTICULATE MATTER; PHOTOSYNTHESIS;

ABUNDANCE; BACTERIUM; CHLOROPHYLL A; COMMUNITY STRUCTURE; ESTUARINE ENVIRONMENT; GENE; GENETIC ANALYSIS; LIGHT AVAILABILITY; MARINE ENVIRONMENT; MICROSCOPY; ORGANIC MATTER; OXIC CONDITIONS; PHOTOAUTOTROPHY; RNA; SALINITY; TROPHIC CONDITIONS; TURBIDITY;

AEROBIC BACTERIUM; AEROBIC METABOLISM; ANAEROBIC GROWTH; ARTICLE; ATLANTIC OCEAN; CLASSIFICATION; DNA SEQUENCE; ECOSYSTEM; FLUORESCENCE MICROSCOPY; GENETIC VARIABILITY; GENETICS; METABOLISM; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; PARTICULATE MATTER; PHOTOSYNTHESIS; PHOTOTROPHY; PHYLOGENY; RIVER; PROCEDURES;

AEROBIOSIS; ANAEROBIOSIS; ATLANTIC OCEAN; BACTERIA, AEROBIC; BACTERIAL PROTEINS; BACTERIOCHLOROPHYLL A; ECOSYSTEM; GENETIC VARIATION; MICROSCOPY, FLUORESCENCE; MOLECULAR SEQUENCE DATA; PARTICULATE MATTER; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PHOTOTROPHIC PROCESSES; PHYLOGENY; RIVERS; SEAWATER; SEQUENCE ANALYSIS, DNA;

CHESAPEAKE BAY; UNITED STATES;

BACTERIA (MICROORGANISMS); PHOTOBACTERIA;

EID: 77954088800     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2010.13     Document Type: Article

References (43)

1. Church MJ, Ducklow HW, Karl DA. (2004). Light dependence of 3H-leucine incorporation in the oligotrophic North Pacific Ocean. Appl Environ Microbiol 70: 4079-4087.
2. Cottrell MT, Kirchman DL. (2003). Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary. Limnol Oceanogr 48: 168-178.
3. Cottrell MT, Kirchman DL. (2009). Photoheterotrophic microbes in the Arctic Ocean in summer and winter. Appl Environ Microbiol 75: 4958-4966.
4. Cottrell MT, Mannino A, Kirchman DL. (2006). Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre. Appl Environ Microbiol 72: 557-564.
5. Cottrell MT, Michelou VK, Nemcek N, DiTullio G, Kirchman DL. (2008). Carbon cycling by microbes influenced by light in the Northeast Atlantic Ocean. Aquat Microb Ecol 50: 239-250. (Pubitemid 351578356)
6. Crump BC, Armbrust EV, Baross JA. (1999). Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean. Appl Environ Microbiol 65: 3192-3204.
7. Crump BC, Peranteau C, Beckingham B, Cornwell JC. (2007). Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters. Appl Environ Microbiol 73: 6802-6810. (Pubitemid 350076798)
8. Cullen JJ. (1982). The deep chlorophyll maximum- comparing vertical profiles of chlorophyll a. Can J Fish Aquat Sci 39: 791-803.
9. DeLong EF, Franks DG, Alldredge AL. (1993). Phylogenetic diversity of aggregate-attached vs free-living marine bacterial assemblages. Limnol Oceanogr 38: 924-934.
10. Eiler A. (2006). Evidence for the ubiquity of mixotrophic bacteria in the upper ocean: implications and consequences. Appl Environ Microbiol 72: 7431-7437. (Pubitemid 44927641)
11. Garneau ME, Vincent WF, Terrado R, Lovejoy C. (2009). Importance of particle-associated bacterial heterotrophy in a coastal Arctic ecosystem. J Mar Syst 75: 185-197.
12. Goericke R. (2002). Bacteriochlorophyll a in the ocean: is anoxygenic bacterial photosynthesis important? Limnol Oceanogr 47: 290-295. (Pubitemid 34115295)
13. Hammer Ø, Harper DAT, Ryan PD. (2001). Paleontological statistics software package for education and data analysis. Paleontol Electon 4: 9-17.
14. Kirchman DL, Yu LY, Fuchs BM, Amann R. (2001). Structure of bacterial communities in aquatic systems as revealed by filter PCR. Aquat Microb Ecol 26: 13-22. (Pubitemid 34235298)
15. Koblízek M, Béjà O, Bidigare RR, Christensen S, Benitez-Nelson B, Vetriani C, et al.(2003). Isolation and characterization of Erythrobacter sp strains from the upper ocean. Arch Microbiol 180: 327-338. (Pubitemid 37421514)
16. Koblízek M, Masín M, Ras J, Poulton AJ, Prásil O. (2007). Rapid growth rates of aerobic anoxygenic phototrophs in the ocean. Environ Microbiol 9: 2401-2406. (Pubitemid 47366652)
17. Koblízek M, Stoñ-Egiert J, Sagan S, Kolber ZS. (2005). Diel changes in bacteriochlorophyll a concentration suggest rapid bacterioplankton cycling in the Baltic Sea. FEMS Microbiol Ecol 51: 353-361. (Pubitemid 40136582)
18. Kolber ZS, Plumley FG, Lang AS, Beatty JT, Blankenship RE, VanDover CL, et al. (2001). Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science 292: 2492-2495.
19. Kolber ZS, Van Dover CL, Niederman RA, Falkowski PG. (2000). Bacterial photosynthesis in surface waters of the open ocean. Nature 407: 177-179.
20. Lami R, Cottrell MT, Ras J, Ulloa O, Obernosterer I, Claustre H, et al. (2007). High abundances of aerobic anoxygenic photosynthetic bacteria in the South Pacific Ocean. Appl Environ Microbiol 73: 4198-4205. (Pubitemid 47068158)
21. Lami R, Cuperova Z, Ras J, Lebaron P, Koblizek M. (2009). Distribution of free-living and particle-attached aerobic anoxygenic phototrophic bacteria in marine environments. Aquat Microb Ecol 55: 31-38.
22. Li Q, Jiao NZ, Peng ZQ. (2006). Environmental control of growth and BChl a expression in an aerobic anoxygenic phototrophic bacterium, Erythrobacter longus (DSMZ6997). Acta Oceanol Sin 25: 138-144. (Pubitemid 46336101)
23. Lionard M, Muylaert K, Tackx M, Vyverman W. (2008). Evaluation of the performance of HPLC-CHEMTAX analysis for determining phytoplankton biomass and composition in a turbid estuary (Schelde, Belgium). Estuar Coast Shelf Sci 76: 809-817. (Pubitemid 351187824)
24. Mackey KRM, Rivlin T, Grossman AR, Post AF, Paytan A. (2009). Picophytoplankton responses to changing nutrient and light regimes during a bloom. Mar Biol 156: 1531-1546.
25. Mary I, Tarran GA, Warwick PE, Terry MJ, Scanlan DJ, Burkill PH, et al. (2008). Light enhanced amino acid uptake by dominant bacterioplankton groups in surface waters of the Atlantic Ocean. FEMS Microbiol Ecol 63: 36-45. (Pubitemid 350233295)
26. Michelou VK, Cottrell MT, Kirchman DL. (2007). Lightstimulated bacterial production and amino acid assimilation by cyanobacteria and other microbes in the North Atlantic Ocean. Appl Environ Microbiol 73: 5539-5546.
27. Muyzer G, Dewaal EC, Uitterlinden AG. (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified gene coding for 16S ribosomal RNA. Appl Environ Microbiol 59: 695-700. (Pubitemid 23072343)
28. Parsons TR, Maita Y, Lalli CM. (1984). A Manual of Chemical and Biological Methods for Seawater Analysis, First edn. Pergamon Press: New York. xiv, 173 p.
29. Porter KG, Feig YS. (1980). The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25: 943-948.
30. Ras J, Claustre H, Uitz J. (2008). Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: comparison between in situ and predicted data. Biogeosciences 5: 353-369. (Pubitemid 351379749)
31. Rathgeber C, Lince MT, Alric J, Lang AS, Humphrey E, Blankenship RE, et al. (2008). Vertical distribution and characterization of aerobic phototrophic bacteria at the Juan de Fuca Ridge in the Pacific Ocean. Photosyn Res 97: 235-244.
32. Salka I, Moulisová V, Koblízek M, Jost G, Jürgens K, Labrenz M. (2008). Abundance, depth distribution, and composition of aerobic bacteriochlorophyll a-producing bacteria in four basins of the central Baltic Sea. Appl Environ Microbiol 74: 4398-4404. (Pubitemid 352031021)
33. Schwalbach MS, Fuhrman JA. (2005). Wide-ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR. Limnol Oceanogr 50: 620-628.
34. Sieracki ME, Gilg IC, Thier EC, Poulton NJ, Goericke R. (2006). Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic. Limnol Oceanogr 51: 38-46. (Pubitemid 43259691)
35. Stepanauskas R, Jorgensen NOG, Eigaard OR, Zvikas A, Tranvik LJ, Leonardson L. (2002). Summer inputs of riverine nutrients to the Baltic Sea: bioavailability and eutrophication relevance. Ecol Monogr 72: 579-597. (Pubitemid 36198934)
36. Veldhuis MJW, Kraay GW. (2004). Phytoplankton in the subtropical Atlantic Ocean: towards a better assessment of biomass and composition. Deep-Sea Res Part I Oceanogr Res Pap 51: 507-530.
37. Waidner LA, Kirchman DL. (2005). Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River. Environ Microbiol 7: 1896-1908.
38. Waidner LA, Kirchman DL. (2007). Aerobic anoxygenic phototrophic bacteria attached to particles in turbid waters of the Delaware and Chesapeake Estuaries. Appl Environ Microbiol 73: 3936-3944.
39. Waidner LA, Kirchman DL. (2008). Diversity and distribution of ecotypes of the eerobic anoxygenic phototrophy gene pufM in the Delaware estuary. Appl Environ Microbiol 74: 4012-4021.
40. Yurkov VV, Beatty JT. (1998). Aerobic anoxygenic phototrophic bacteria. Microbiol Mol Biol Rev 62: 695-724.
41. Yutin N, Béjà O, Suzuki M. (2008). The use of denaturing gradient gel electrophoresis with fully degenerate pufM primers to monitor aerobic anoxygenic phototrophic assemblages. Limnol Oceanogr Meth 6: 427-440.
42. Yutin N, Suzuki MT, Béjà O. (2005). Novel primers reveal wider diversity among marine aerobic anoxygenic phototrophs. Appl Environ Microbiol 71: 8958-8962. (Pubitemid 41804039)
43. Yutin N, Suzuki MT, Teeling H, Weber M, Venter JC, Rusch DB, et al. (2007). Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes. Environ Microbiol 9: 1464-1475. (Pubitemid 46763527)