Structure of bacterial communities in aquatic systems as revealed by filter PCR

Aquatic Microbial Ecology

Volumn 26, Issue 1, 2001, Pages 13-22

  Kirchman, David L ^a   Yu, Liying ^a   Fuchs, Bernhard M ^a   Amann, Rudolf ^a  

^a UNIVERSITY OF DELAWARE   (United States)

Author keywords

16S rRNA; Bacterial community structure; Clone libraries; DGGE; Filter PCR

Indexed keywords

BACTERIA (MICROORGANISMS); PROKARYOTA;

EID: 0035955540     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame026013     Document Type: Article

References (38)

1. Diversity of free-living and attached bacteria in offshore western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA
2. Extremely halophilic Bacteria in crystallizer ponds from solar salterns
3. Microbial control of oceanic carbon flux: The plot thickens
4. Bacterial diversity in an arctic lake: A freshwater SAR11 cluster
5. Bacterial bioluminescence: Isolation and expression of the luciferase genes from Vibrio harveyi
6. Genetic diversity of total, active and culturable marine bacteria in coastal seawater
7. Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
8. Community composition of marine bacterioplankton determined by 16S rDNA clone libraries and fluorescence in situ hybridization
9. Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean
10. Anti-fungal properties of chitinolytic dune soil bacterial
11. Formalin-induced infidelity in PCR-amplified DNA fragments
12. Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
13. Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria
14. Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques
15. Extraction from natural planktonic microorganisms of DNA suitable for molecular biological studies
16. Evolution, diversity and molecular ecology of marine prokaryotes
17. Genetic diversity in Sargasso Sea bacterioplankton
18. Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton
19. Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization
20. Numerical dominance of a group of marine bacteria in the alpha-subclass of the class Proteobacteria in coastal seawater
21. Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom
22. Ancient bone DNA amplified
23. Biogeographical diversity among marine bacterioplankton
24. Rapid polymerase chain-reaction amplification using intact bacterial cells
25. 16S/23S rRNA sequencing
26. Microscale patchiness in bacterial community richness in seawater
27. Microscale distribution of bacterioplankton in relation to phytoplankton: Results from 100-nl samples
28. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
29. Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
30. The use of DAPI for identifying and counting aquatic microflora
31. Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina
32. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase
33. Heterogeneity in bacterioplankton abundance from 4.5 millimetre resolution sampling
34. Cloning, sequence, and expression of a chitinase gene from a marine bacterium, Altermonas sp. strain O-7
35. Flow sorting of microorganisms for molecular analysis
36. Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
37. Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropoinate in an algal bloom in the North Sea