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In the solution NMR structure of a M2 (18-60)-rimantadine complex the drug, in a 200-fold excess, is located on the C-terminus side at helical interfaces, Schnell, J. R.; Chou, J. J. Nature 2008, 451, 591. This structure seems to represent a non-specific drug binding site model according to the recent ssNMR data, see Ref. 6b.
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The synthesis of most of the ligands (compounds 6, 8, 9, 13-15, 18) has been published; experimental details for compounds 10-12, 16, 17 will be published in the future.
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See for example:. Krumbholz A., Schmidtke M., Bergmann S., Motzke S., Bauer K., Stech J., Dürrwald R., Wutzler P., and Zell R. J. Gen. Virol. 9 (2009) 900
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See for example:
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See for example:. Warren G.L., Andrews C.W., Capelli A.M., Clarke B., LaLonde J., Lambert M.H., Lindvall M., Nevins N., Semus S.F., Senger S., Tedesco G., Wall I.D., Woolven J.M., Peishoff C.E., and Head M.S. J. Med. Chem. 49 (2006) 5912
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In contrast recent modelling studies locate no hydrogen bonding for the complex:
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In contrast recent modelling studies locate no hydrogen bonding for the complex:. Du Q.-S., Huang R.B., Wang C.-H., Li X.-M., and Chou K.-C. J. Theor. Biol. 259 (2009) 159
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77954086488
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The docking calculations performed on the wild type M2TM sequence of Udorn strain (SSDPLVVAASIIGILHLIL WILDRL) gave similar results; the extra methyl group in residue Ala34 of the mutant sequence (which used for the X-ray structure) seems to assist a little bit aminoadamantane drugs to adopt more stable poses with adamantane orienting towards the wider C-end and ammonium group pointing towards the N-end.
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