Contemporary habitat discontinuity and historic glacial ice drive genetic divergence in Chilean kelp

BMC Evolutionary Biology

Volumn 10, Issue 1, 2010, Pages

  Fraser, Ceridwen I ^a   Thiel, Martin ^b,c   Spencer, Hamish G ^a   Waters, Jonathan M ^a  

^a UNIVERSITY OF OTAGO   (New Zealand)

^b Facultad de Ciencias Del Mar   (Chile)

^c CENTRO DE ESTUDIOS AVANZADOS EN ZONAS ÁRIDAS CEAZA   (Chile)

Author keywords

[No Author keywords available]

Indexed keywords

COASTAL ZONE; CONNECTIVITY; EVOLUTIONARY BIOLOGY; GENE FLOW; GENETIC STRUCTURE; GENETIC VARIATION; KELP FOREST; LAST GLACIAL MAXIMUM; MARINE ENVIRONMENT; PALEOCLIMATE; PHYLOGEOGRAPHY;

CHILE; PATAGONIA;

DURVILLAEA ANTARCTICA;

ALGAL DNA; CHLOROPLAST DNA; MITOCHONDRIAL DNA;

ARTICLE; BAYES THEOREM; CHILE; DNA SEQUENCE; ECOSYSTEM; GENETICS; GEOGRAPHY; HAPLOTYPE; ICE COVER; KELP; MOLECULAR GENETICS; PHYLOGENY; SPECIES DIFFERENTIATION; STATISTICAL MODEL;

BAYES THEOREM; CHILE; DNA, ALGAL; DNA, CHLOROPLAST; DNA, MITOCHONDRIAL; ECOSYSTEM; GENETIC SPECIATION; GEOGRAPHY; HAPLOTYPES; ICE COVER; KELP; LIKELIHOOD FUNCTIONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 77954052336     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-203     Document Type: Article

References (81)

1. Recruitment and the local dynamics of open marine populations. MJ Caley MH Carr MA Hixon TP Hughes GP Jones BA Menge, Annu Rev Ecol Syst 1996 27 477 500 10.1146/annurev.ecolsys.27.1.477 (Pubitemid 27079293)
2. Genetic assessment of connectivity among marine populations. ME Hellberg RS Burton JE Neigel SR Palumbi, Bull Mar Sci 2002 70 1 273 290
3. Population genetics, demographic connectivity, and the design of marine reserves. SR Palumbi, Ecol Appl 2003 13 1 146 S158 10.1890/1051-0761(2003) 013[0146:PGDCAT]2.0.CO;2
4. Recent progress in understanding larval dispersal: new directions and digressions. LA Levin, Integr Comp Biol 2006 46 3 282 297 10.1093/icb/icj024 (Pubitemid 44290594)
5. Larval dispersal and marine population connectivity. RK Cowen S Sponaugle, Annu Rev Mar Sci 2009 1 443 466 10.1146/annurev.marine.010908.163757
6. Genetic divergence, reproductive isolation, and marine speciation. SR Palumbi, Annu Rev Ecol Syst 1994 25 547 572 10.1146/annurev.es.25.110194.002555
7. Population subdivision in marine environments: the contributions of biogeography, geographical distance and discontinuous habitat to genetic differentiation in a blennioid fish, Axoclinus nigricaudus. C Riginos MW Nachman, Mol Ecol 2001 10 6 1439 1453 10.1046/j.1365-294X.2001.01294.x 11412367
8. The Humboldt Current System of northern and central Chile: Oceanographic processes, ecological interactions and socioeconomic feedback. M Thiel EC Macaya E Acuna WE Arntz H Bastias K Brokordt PA Camus JC Castilla LR Castro M Cortes,, et al. Oceanogr Mar Biol Annu Rev 2007 45 195 344
9. Population genetics of Tigriopus californicus. 2. Differentiation among neighboring populations. RS Burton MW Feldman, Evolution 1981 35 6 1192 1205 10.2307/2408132
10. Is the species composition of rocky intertidal invertebrates across a biogeographic barrier in south-eastern Australia related to their potential for dispersal? EZ Hidas TL Costa DJ Ayre TE Minchinton, Marine and Freshwater Research 2007 58 9 835 842
11. Influence of habitat discontinuity, geographical distance, and oceanography on fine-scale population genetic structure of copper rockfish (Sebastes caurinus). ML Johansson MA Banks KD Glunt HM Hassel-Finnegan VP Buonaccorsi, Mol Ecol 2008 17 13 3051 3061 10.1111/j.1365-294X.2008.03814.x 18522692
12. Connectivity among fragmented populations of a habitat-forming alga, Phyllospora comosa (Phaeophyceae, Fucales) on an urbanised coast. MA Coleman BP Kelaher, Mar Ecol Prog Ser 2009 381 63 70 10.3354/meps07977
13. Current patterns, habitat discontinuities and population genetic structure: the case of the kelp Laminaria digitata in the English Channel. C Billot CR Engel S Rousvoal B Kloareg M Valero, Mar Ecol-Prog Ser 2003 253 111 121 10.3354/meps253111
14. Small-scale genetic structure in the sea palm Postelsia palmaeformis Ruprecht (Phaeophyceae). HT Kusumo CA Pfister JT Wootton, Mar Biol 2006 149 4 731 742 10.1007/s00227-006-0254-z (Pubitemid 43989365)
15. Long-term copper mine waste disposal in northern Chile associated with gene flow disruption of the intertidal kelp Lessonia nigrescens. S Faugeron EA Martinez JA Correa C Billot, Mar Ecol Prog Ser 2005 288 129 140 10.3354/meps288129
16. The influence of coastal topography, circulation patterns, and rafting in structuring populations of an intertidal alga. JF Muhlin CR Engel R Stessel RA Weatherbee SH Brawley, Mol Ecol 2008 17 5 1198 1210 10.1111/j.1365-294X.2007. 03624.x 18302684
17. Dispersal of Hormosira banksii (Phaeophyceae) via detached fragments: Reproductive viability and longevity. PF McKenzie A Bellgrove, J Phycol 2008 44 5 1108 1115 10.1111/j.1529-8817.2008.00563.x
18. Presence of sporophylls in floating kelp rafts of Macrocystis spp. (Phaeophyceae) along the Chilean Pacific coast. EC Macaya S Boltana IA Hinojosa JE Macchiavello NA Valdivia NR Vasquez AH Buschmann JA Vasquez JMA Vega M Thiel, J Phycol 2005 41 5 913 922 10.1111/j.1529-8817.2005.00118.x (Pubitemid 41457529)
19. Kelp genes reveal effects of subantarctic sea ice during the Last Glacial Maximum. CI Fraser R Nikula HG Spencer JM Waters, Proc Natl Acad Sci USA 2009 106 9 3249 3253 10.1073/pnas.0810635106 19204277
20. Some genetic consequences of ice ages, and their role in divergence and speciation. GM Hewitt, Biol J Linn Soc 1996 58 3 247 276
21. The genetic legacy of the Quaternary ice ages. G Hewitt, Nature 2000 405 6789 907 913 10.1038/35016000 10879524
22. Genetic consequences of climatic oscillations in the Quaternary. GM Hewitt, Philos Trans R Soc London, Ser B 2004 359 1442 183 195 10.1098/rstb.2003.1388 (Pubitemid 38231471)
23. Phylogeographic insights into cryptic glacial refugia. J Provan KD Bennett, Trends Ecol Evol 2008 23 10 564 571 10.1016/j.tree.2008.06.010 18722689
24. Evaluating signatures of glacial refugia for North Atlantic benthic marine taxa. CA Maggs R Castilho D Foltz C Henzler MT Jolly J Kelly J Olsen KE Perez W Stam R Vainola,, et al. Ecology 2008 89 11 108 S122 10.1890/08-0257.1 19097488
25. Using molecules to understand the distribution of animal and plant diversity. GM Hewitt, Evolution: from molecules to ecosystems Oxford: Oxford University Press, Moya A, Font E, 2004 157 170
26. The Pleistocene glaciations of Chile. S Harrison, Quaternary Glaciations: Extent and Chronology Boston: Elsevier, Ehlers J, Gibbard PL, 2004 III
27. Climatic inferences from glacial and palaeoecological evidence at the last glacial termination, southern South America. RD McCulloch MJ Bentley RS Purves NRJ Hulton DE Sugden CM Clapperton, Journal of Quaternary Science 2000 15 4 409 417 10.1002/1099-1417(200005)15:4<409::AID-JQS5393.0.CO;2-#
28. The Last Glacial Maximum and deglaciation in southern South America. NRJ Hulton RS Purves RD McCulloch DE Sugden MJ Bentley, Quaternary Sci Rev 2002 21 1-3 233 241 10.1016/S0277-3791(01)00103-2 (Pubitemid 34067514)
29. Durvillaea (Bory). C Hay, Biology of Economic Algae The Hague: SPB Academic Publishing, Akatsuka I, 1994 353 384 p 545
30. Long-distance seed dispersal in plant populations. ML Cain BG Milligan AE Strand, Am J Bot 2000 87 9 1217 1227 10.2307/2656714 10991892
31. Why trees migrate so fast: Confronting theory with dispersal biology and the paleorecord. JS Clark, Am Nat 1998 152 2 204 224 10.1086/286162 18811386
32. Effect of temperature and grazing on growth and reproduction of floating Macrocystis spp. (Phaeophyceae) along a latitudinal gradient. E Rothäusler I Gomez IA Hinojosa U Karsten F Tala M Thiel, J Phycol 2009 45 3 547 559 10.1111/j.1529-8817.2009.00676.x
33. Self-replacement and community modification by the southern bull kelp Durvillaea antarctica. DI Taylor DR Schiel, Mar Ecol Prog Ser 2005 288 87 102 10.3354/meps288087
34. Human exclusion from rocky intertidal of Las Cruces, central Chile - effects on Durvillaea antarctica (Phaeophyta, Durvilleales). JC Castilla RH Bustamante, Mar Ecol Prog Ser 1989 50 3 203 214 10.3354/meps050203
35. Impact of human exploitation on populations of the intertidal southern bull-kelp Durvillaea antarctica (Phaeophyta, Durvilleales) in central Chile. RH Bustamante JC Castilla, Biol Conserv 1990 52 3 205 220 10.1016/0006-3207(90) 90126-A
36. Recovery of Durvillaea antarctica (Durvilleales) inside and outside Las Cruces marine reserve, Chile. JC Castilla MA Campo RH Bustamante, Ecol Appl 2007 17 5 1511 1522 10.1890/06-1285.1 17708225
37. The Flindersian and Peronian Provinces. AJK Millar, Algae of Australia: Introduction Melbourne: CSIRO Publishing, McCarthy PM, Orchard AE, 2007 554 559
38. Some physical oceanographic features of inlets of Chile. GL Pickard, J Fish Res Board Can 1971 28 8 1077 1106
39. Ecografía del litoral chileno. CA Viviani, Studies on Neotropical Fauna and Environment 1979 14 65 123 10.1080/01650527909360548
40. Biogeographical patterns of benthic macroinvertebrates in the Southeastern Pacific littoral. DA Lancellotti JA Vasquez, J Biogeogr 1999 26 5 1001 1006 10.1046/j.1365-2699.1999.00344.x (Pubitemid 30044697)
41. Biodiversity of Chilean sea anemones (Cnidaria: Anthozoa): distribution patterns and zoogeographic implications, including new records for the fjord region. V Häussermann, Invest Mar 2006 34 23 35
42. Cnidaria, Hydrozoa: latitudinal distribution of hydroids along the fjords region of southern Chile, with notes on the world distribution of some species. HR Galea V Häussermann G Försterra, Check List 2007 3 308 320
43. Spatial and temporal distribution of floating kelp in the channels and fjords of southern Chile. IA Hinojosa M Pizarro M Ramos M Thiel, Estuar Coast Shelf Sci 2010 87 3 367 377 10.1016/j.ecss.2009.12.010
44. Genetic and morphological analyses of the southern bull kelp Durvillaea antarctica (Phaeophyceae: Durvillaeales) in New Zealand reveal cryptic species. CI Fraser CH Hay HG Spencer JM Waters, J Phycol 2009 45 2 436 443 10.1111/j.1529-8817.2009.00658.x
45. Twenty years of phylogeography: the state of the field and the challenges for the Southern Hemisphere. LB Beheregaray, Mol Ecol 2008 17 17 3754 3774 18627447
46. The littoral fish assemblage of the Desventuradas Islands (Chile) has zoogeographical affinities with the Western Pacific. G Pequeno J Lamilla, Global Ecol Biogeogr 2000 9 5 431 437 10.1046/j.1365-2699.2000.00207.x
47. Kelp rafts in the Southern Ocean. SDA Smith, Global Ecol Biogeogr 2002 11 1 67 69 10.1046/j.1466-822X.2001.00259.x (Pubitemid 34175990)
48. Cladogenesis as the result of long-distance rafting events in South Pacific topshells (Gastropoda, Trochidae). KM Donald M Kennedy HG Spencer, Evolution 2005 59 8 1701 1711 16329241
49. Multiple origins of the Juan Fernandez kelpfish fauna and evidence for frequent and unidirectional dispersal of cirrhitoid fishes across the south Pacific. CP Burridge R Melendez BS Dyer, Syst Biol 2006 55 4 566 578 10.1080/10635150600812585 16857651
50. The distribution of South American galaxiid fishes: the role of biological traits and post-glacial history. V Cussac S Ortubay G Iglesias D Milano ME Lattuca JP Barriga M Battini M Gross, J Biogeogr 2004 31 1 103 121
51. Surviving historical Patagonian landscapes and climate: molecular insights from Galaxias maculatus. TS Zemlak EM Habit SJ Walde C Carrea DE Ruzzante, BMC Evol Biol 2010 10 67 10.1186/1471-2148-10-67 20211014
52. Across the southern Andes on fin: glacial refugia, drainage reversals and a secondary contact zone revealed by the phylogeographical signal of Galaxias platei in Patagonia. TS Zemlak EM Habit SJ Walde MA Battini EDM Adams DE Ruzzante, Mol Ecol 2008 17 23 5049 5061 10.1111/j.1365-294X.2008.03987.x 19017262
53. Phylogeography of the Percichthyidae (Pisces) in Patagonia: roles of orogeny, glaciation, and volcanism. DE Ruzzante SJ Walde VE Cussac ML Dalebout J Seibert S Ortubay E Habit, Mol Ecol 2006 15 10 2949 2968 10.1111/j.1365-294X. 2006.03010.x 16911213
54. Climate control on ancestral population dynamics: insight from Patagonian fish phylogeography. DE Ruzzante SJ Walde JC Gosse VE Cussac E Habit TS Zemlak EDM Adams, Mol Ecol 2008 17 9 2234 2244 10.1111/j.1365-294X.2008.03738.x 18363661
55. Comparative phylogeography of codistributed species of Chilean Liolaemus (Squamata: Tropiduridae) from the central-southern Andean range. PF Victoriano JC Ortiz E Benavides BJ Adams JW Sites, Mol Ecol 2008 17 10 2397 2416 10.1111/j.1365-294X.2008.03741.x 18430148
56. Genetic variation in Fitzroya cupressoides (alerce), a threatened South American conifer. TR Allnutt AC Newton A Lara A Premoli JJ Armesto R Vergara M Gardner, Mol Ecol 1999 8 6 975 987 10.1046/j.1365-294x.1999.00650.x 10434418
57. Quaternary evolutionary history of Austrocedrus chilensis, a cypress native to the Andean-Patagonian forest. MJ Pastorino LA Gallo, J Biogeogr 2002 29 9 1167 1178 10.1046/j.1365-2699.2002.00731.x (Pubitemid 35180903)
58. Pleistocene refugia and recolonization routes in the southern Andes: insights from Hypochaeris palustris (Asteraceae, Lactuceae). AN Muellner K Tremetsberger T Stuessy CM Baeza, Mol Ecol 2005 14 1 203 212 10.1111/j.1365-294X.2004.02386.x 15643964
59. A phylogeographical analysis across three biogeographical provinces of the south-eastern Pacific: the case of the marine gastropod Concholepas concholepas. L Cardenas JC Castilla F Viard, J Biogeogr 2009 36 5 969 981 10.1111/j.1365-2699.2008.02056.x
60. Avoiding offshore transport of competent larvae during upwelling events: The case of the gastropod Concholepas concholepas in Central Chile. E Poulin AT Palma G Leiva D Narvaez R Pacheco SA Navarrete JC Castilla, Limnol Oceanogr 2002 47 4 1248 1255 10.4319/lo.2002.47.4.1248
61. The paradox of Rockall - why is a brooding gastropod (Littorina saxatilis) more widespread than one having a planktonic larval dispersal stage (L. littorea)? K Johannesson, Mar Biol 1988 99 4 507 513 10.1007/BF00392558
62. Phylogeographic analysis of the brooding brittle star Amphipholis squamata (Echinodermata) along the coast of New Zealand reveals high cryptic genetic variation and cryptic dispersal potential. R Sponer MS Roy, Evolution 2002 56 10 1954 1967 12449482
63. Out of Africa: The slow train to Australasia. JM Waters MS Roy, Syst Biol 2004 53 1 18 24 10.1080/10635150490264671 14965897
64. The ecology of rafting in the marine environment. III. Biogeographical and evolutionary consequences. M Thiel PA Haye, Oceanogr Mar Biol Annu Rev 2006 44 323 429
65. Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications. GW Saunders, Philos Trans R Soc London, Ser B 2005 360 1462 1879 1888 10.1098/rstb.2005.1719 (Pubitemid 44365048)
66. A multi-gene molecular investigation of the kelp (Laminariales, Phaeophyceae) supports substantial taxonomic re-organization. CE Lane C Mayes LD Druehl GW Saunders, J Phycol 2006 42 2 493 512 10.1111/j.1529-8817.2006.00204.x
67. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 5 696 704 10.1080/10635150390235520 14530136
68. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. K Tamura M Nei, Mol Biol Evol 1993 10 3 512 526 8336541
69. MODELTEST: testing the model of DNA substitution. D Posada KA Crandall, Bioinformatics 1998 14 9 817 818 10.1093/bioinformatics/14.9.817 9918953
70. Confidence limits on phylogenies - an approach using the bootstrap. J Felsenstein, Evolution 1985 39 4 783 791 10.2307/2408678
71. MrBayes 3: Bayesian phylogenetic inference under mixed models. F Ronquist JP Huelsenbeck, Bioinformatics 2003 19 12 1572 1574 10.1093/bioinformatics/ btg180 12912839
72. Tracer v.1.4 [computer program]. A Rambaut AJ Drummond, 2007 http://beast.bio.ed.ac.uk/tracer
73. TCS: a computer program to estimate gene genealogies. M Clement D Posada KA Crandall, Mol Ecol 2000 9 10 1657 1659 10.1046/j.1365-294x.2000.01020.x 11050560
74. Detection of disease clustering and a generalized regression approach. N Mantel, Cancer Res 1967 27 209 220 6018555
75. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. R Peakall PE Smouse, Mol Ecol Notes 2006 6 1 288 295 10.1111/j.1471-8286.2005.01155.x (Pubitemid 43373825)
76. Mathematical model for studying genetic variation in terms of restriction endonucleases. M Nei WH Li, P Natl Acad Sci USA 1979 76 10 5269 5273 10.1073/pnas.76.10.5269 (Pubitemid 10236121)
77. Arlequin ver. 3.0: an integrated software for molecular evolutionary genetic analysis. L Excoffier G Laval S Schneider, Evolutionary Bioinformatics Online 2005 1 47 50 19325852
78. A measure of population subdivision based on microsatellite allele frequencies. M Slatkin, Genetics 1995 139 1 457 462 7705646
79. R: A language and environment for statistical computing v.[computer program]. R Development Core Team, 2009 http://www.R-project.org
80. World Ocean Atlas, Temperature. S Levitus TP Boyer, Washington, DC: US Govt. Printing Office 1994 4
81. A 70-kyr sea surface temperature record off southern Chile (Ocean Drilling Program Site 1233). J Kaiser F Lamy D Hebbeln, Paleoceanography 2005 20 A4009 10.1029/2005PA001146 (Pubitemid 43262398)