Population subdivision in marine environments: The contributions of biogeography, geographical distance and discontinuous habitat to genetic differentiation in a blennioid fish, Axoclinus nigricaudus

Molecular Ecology

Volumn 10, Issue 6, 2001, Pages 1439-1453

  Riginos, C ^a,b   Nachman, M W ^a  

^a University of Arizona   (United States)

^b DUKE UNIVERSITY   (United States)

Author keywords

Gene flow; Isolation by distance; Mitochondrial DNA; Phylogeny; Phylogeography; Population structure

Indexed keywords

BIOGEOGRAPHIC DISTRIBUTION; CONTROL REGION; GENE SEQUENCING; GENETIC DIFFERENCE; GENETIC RECOMBINATION; GENETIC VARIABILITY; GEOGRAPHICAL VARIATION; GULF; HABITAT; MARINE ENVIRONMENT; MITOCHONDRION; MOLECULAR ECOLOGY; PHYLOGENETIC ANALYSIS; POPULATION STRUCTURE; SPECIES DIFFERENTIATION; UNITED STATES;

ANIMALS; BASE SEQUENCE; CALIFORNIA; DNA, MITOCHONDRIAL; ECOLOGY; FISHES; GENETICS, POPULATION; HAPLOTYPES; MOLECULAR SEQUENCE DATA; SEAWATER;

EID: 0034988298     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2001.01294.x     Document Type: Article

References (91)

1. Descriptions of two new genera and four new species of Triplefins (Pisces: Tripterygiidae) from the tropical Eastern Pacific
2. Molecular population structure and biogeographic history of a regional fauna: A case history with lessons for conservation biology
3. High levels of genetic subdivision of marine and estuarine populations of the estruarine catfish Cnidoglanis macrocephalus (Plotosidae) in southwestern Australia
4. Spring and summer in the Gulf of California: Observations of surface thermal patterns
5. Morphological and genetic variation in Japanese populations of the anemonefish Amphiprion clarkii
6. Microsatellite polymorphism and the population structure of Atlantic cod (Gadus morhua) in the northwest Atlantic
7. Major genetic differences between crown-of-thorns starfish (Acanthaster planci) populations in the Indian and Pacific Ocean
8. Genetic structure of giant clam (Tridacna maxima) populations in the west Pacific is not consistent with dispersal by present-day ocean currents
9. Phylogeography of the sardines (Sardinops spp.): Assessing biogeographic models and population histories in temperate upwelling zones
10. Thermohaline circulation in the Gulf of California
11. Distribution and retention of larval fishes near reefs in the Gulf of California
12. Parallel within-island microevolution of lizards on neighboring islands
13. Intraspecific phylogeny across the Point Conception biogeographic boundary
14. Population genetics of Tigriopus californicus: II. Differentiation among neighboring populations
15. Measures of divergence between populations and the effects of forces that reduce variability
16. Concordance between dispersal and mitochondrial gene flow: Isolation by distance in a tropical teleost, Lates calcarifer (Australian barramundi)
17. When oceans meet: A teleost shows secondary intergradation at an Indian-Pacific interface
18. Group selection for a polygenic behavioral trait: Estimating the degree of population subdivision
19. Gene flow and larval duration in seven species of fish from the Great Barrier Reef
20. Comparison of distance matrices in studies of population structure and genetic microdifferentiation: Quadratic assignment
21. Population structure of the black tiger prawn, Penaeus monodon, among western Indian Ocean and western Pacific populations
22. Genetic population structure in two tropical sponge-dwelling shrimps that differ in dispersal potential
23. Evolution of human mitochondrial DNA-evidence for departure from a pure neutral model of populations at equilibrium
24. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
25. New statistical tests of neutrality for DNA samples from a population
26. Statistical tests of neutrality of mutations
27. Mitochondrial DNA diversification and population structure in fishes from the Gulf of Mexico and Western Atlantic
28. Dependence of gene flow on geographic distance in two solitary corals with different larval dispersal capabilities
29. Analysis of genetic structure of blacklip abalone (Haliotis rubra) populations using RAPD, minisatellite, and microsatellite markers
30. Combinatorial data analysis: Association and partial association
31. A statistical test for detecting geographic subdivision
32. Estimation of levels of gene flow from DNA sequence data
33. Effect of contrasting patterns of larval dispersal on the genetic connectedness of local populations of two intertidal starfish, Patieriella calcar and P. exigua
34. Neighbourhood size and the importance of barriers to gene flow in an intertidal snail
35. Effects of isolation by distance and geographical discontinuity on genetic subdivision of Littorina cingulata
36. Increased genetic divergence and reduced genetic variation in populations of the snail Bembicium vittatum in isolated tidal ponds
37. High levels of genetic subdivision in peripherally isolated populations of atherinid fish Craterocephalus capreoli in the Houtman Abrohlos Islands, Western Australia
38. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences
39. Maintenance of an aminopeptidase allele frequency cline by natural selection
40. Changing patterns of population structure and gene flow at different spatial scales in Birgus latro (the coconut crab)
41. Indo-Pacific population structure and evolutionary history of the coconut crab Birgus latro
42. Structure and evolution of teleost mitochondrial control regions
43. Massive gene flow across the world's most potent marine biogeographic barrier
44. Do riverine barriers, history or introgression shape the genetic structuring of a common shrew (Sorex araneus) population?
45. Intraspecific genetic variation of striped red mullet (Mullus surmuletus L.) in the Mediterranean Sea assessed by allozyme and random amplified polymorphic DNA (RAPD) analysis
46. Randomization and regression methods for testing associations with geographical, environmental and biological distances between populations
47. The detection of disease clustering and a generalized regression approach
48. Concordant evolutionary patterns among Indo-West Pacific butterfly fishes
49. Color pattern evolution, assortative mating, and genetic differentiation in brightly colored butterflyfishes (Chaetodontidae)
50. Nonneutral mitochondrial DNA variation in humans and chimpanzees
51. Analysis of gene diversity in subdivided populations
52. Mathematical model for studying genetic variation in terms of restriction endonucleases
53. Phylogeography and population history of Atlantic mackeral (Scomber scombrus L.): A genealogical approach reveals genetic structuring among the eastern Atlantic stocks
54. Tidal and atmospheric forcing of the upper ocean in the Gulf of California 1. Sea surface temperature variability
55. Genetic divergence, reproductive isolation, and marine speciation
56. Speciation and population genetic structure in tropical Pacific sea urchins
57. Geographical structuring of mitochondrial DNA in Chalcides sexlineatus within the island of Gran Canaria
58. A genetic metapopulation model for reef fishes in oceanic islands: The case of the surgeonfish, Acanthurus triostegus
59. Genetic population structure and gene flow in the Atlantic Cod Gadus morhua: A comparison of allozyme and nuclear RFLP loci
60. Genetic mechanisms for adapting to a changing environment
61. Effects of oceanographic circulation on the gene flow, genetic structure, and phylogeography of the rosethorn rockfish (Sebastes helromaculatus)
62. The zoogeographic relationships of marine shore fishes of tropical America
63. A nuclear DNA basis for shelf- and bank-scale population structure in northwest Atlantic cod (Gadus morhua): Labrador to Georges Bank
64. The neighbor-joining method: A new method for reconstructing phylogenetic trees
65. Intertidal microhabitat and selection at MPI: Interlocus contrasts in the northern acorn barnacle, Semibalanus balanoides
66. Subtle population structuring within a highly vagile marine invertebrate, the veined squid Loligo forbesi, demonstrated with microsatellite DNA markers
67. What can population genetics tell us about dispersal and biogeographic history of coral-reef fishes?
68. Early life histories, ocean currents, and the population genetics of Caribbean reef fishes
69. Multiple regression and correlation extensions of the Mantel test of matrix correspondance
70. Phylogeographical structure of the Dover sole Microstomus pacificus: The larval retention hypothesis and genetic divergence along the deep continental slope of the northeastern Pacific Ocean
71. Patterns of gene flow and genetic divergence in the northeastern Pacific Clinidae (Teleostei: Blennioidei), based on allozyme and morphological data
72. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
73. Restricted gene flow and incipient speciation in disjunct Pacific Ocean and Sea of Cortez populations of a reef fish species, Girella nigricans
74. The rocky-shore fishes
75. Resilience of a rocky intertidal fish community in a physically unstable environment
76. The distribution and affinities of the marine fish fauna of the Gulf of California
77. A multispecies approach to the analysis of gene flow in marine shore fishes
78. A comparison of genetic diversity levels in marine, freshwater, and anadromous fishes
79. On the number of segregating sites in genetical models without recombination
80. Infraspecific mitochondrial sequence diversity in Hydrobia ulvae and Hydrobia ventrosa (Hydrobiidae: Rissooidea: Gastropoda): Do their different life histories affect biogeographic patterns and gene flow?
81. Geographic variation in the milkfish Chanos chanos. I. Biochemical evidence
82. Isolation by distance
83. The genetical structure of populations
84. The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout, Oncorhynchus mykiss