Determinants of population genetic structure in eastern chipmunks (tamias striatus): The role of landscape barriers and sex-biased dispersal

Journal of Heredity

Volumn 101, Issue 4, 2010, Pages 413-422

  Chambers, Jennifer L ^a   Garant, Dany ^a  

^a UNIVERSITÉ DE SHERBROOKE   (Canada)

Author keywords

genetic differentiation; isolation by distance; landscape genetics; microsatellite loci; sex biased dispersal; Tamias striatus

Indexed keywords

ARTICLE; CANADA; CHIPMUNK; GENE FLOW; GENE LOCUS; GENE STRUCTURE; GENOTYPE; GEOGRAPHIC DISTRIBUTION; MICROSATELLITE MARKER; NONHUMAN; POPULATION GENETIC STRUCTURE; PRIORITY JOURNAL; RODENT; SEX RATIO; ANIMAL; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; MALE; POPULATION DYNAMICS; POPULATION GENETICS; SCIURIDAE;

TAMIAS STRIATUS;

MICROSATELLITE DNA;

ANIMALS; CANADA; GENE FLOW; GENETIC STRUCTURES; GENETICS, POPULATION; GENOTYPE; GEOGRAPHY; MALE; MICROSATELLITE REPEATS; ONTARIO; POPULATION DYNAMICS; QUEBEC; SCIURIDAE;

EID: 77953862764     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esq029     Document Type: Article

References (64)

1. Aljanabi SM, Martinez I. 1997. Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res. 25:4692-4693.
2. Anderson SJ, Fike JA, Dharmarajan G, Rhodes OEJ. 2006. Characterization of 12 polymorphic microsatellite loci for eastern chipmunks (Tamias striatus). Mol Ecol Notes. 7:513-515.
3. Bélanger L, Grenier M. 2002. Agriculture intensification and forest fragmentation in the St. Lawrence valley, Québec, Canada. Landsc Ecol. 17:495-507.
4. Bohonak AJ. 1999. Dispersal, gene flow and population structure. Q Rev Biol. 74:21-45.
5. Canada MAB. 2000. Landscape changes at Canada's biosphere reserves. Toronto (Canada): Environment Canada.
6. Cavalli-Sforza LL, Edwards AWF. 1967. Phylogenetic analysis: models and estimation procedures. Am J Hum Genet. 19:233-257.
7. Clark RW, Brown WS, Stechert R, Zamudio KR. 2008. Integrating individual behaviour and landscape genetics: the population structure of timber rattlesnake hibernacula. Mol Ecol. 17:719-730.
8. Crispo E, Bentzen P, Reznick DN, Kinnison MT, Hendry AP. 2006. The relative influence of natural selection and geography on gene flow in guppies. Mol Ecol. 15:49-62.
9. Crispo E, Hendry AP. 2005. Does time since colonization influence isolation by distance? A meta-analysis. Conserv Genet. 6:665-682.
10. Cullingham CI, Kyle CJ, Pond BA, Rees EE, White BN. 2009. Differential permeability of rivers to raccoon gene flow corresponds to rabies incidence in Ontario, Canada. Mol Ecol. 18:43-53.
11. Dallimer M, Blackburn C, Jones PJ, Pemberton JM. 2002. Genetic evidence for male biased dispersal in the red-billed quelea Quelea quelea. Mol Ecol. 11:529-533.
12. Dewey SE, Heywood JS. 1988. Spatial genetic structure in a population of Psychotria nervosa. I. Distribution of genotypes. Evolution. 42:834-838.
13. Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol. 14:2611-2620.
14. Excoffier L, Laval G, Schneider S. 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online. 1:47-50.
15. Favre L, Balloux F, Goudet J, Perrin N. 1997. Female-biased dispersal in the monogamous mammal Crocidura russula: evidence from field data and microsatellite patterns. Proc R Soc Lond B Biol Sci. 264:127-132.
16. Felsenstein J. 1989. PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics. 5:164-166.
17. Garant D, Forde SE, Hendry AP. 2007. The multifarious effects of dispersal and gene flow on contemporary adaptation. Funct Ecol. 21:434-443.
18. Gauffre B, Estoup A, Bretagnolle V, Cosson J-F. 2008. Spatial genetic structure of a small rodent in a heterogeneous landscape. Mol Ecol. 17:4619-4629.
19. Giordano AR, Ridenhour BJ, Storfer A. 2007. The influence of altitude and topography on genetic structure in the long-toed salamander (Ambystoma macrodactylum). Mol Ecol. 16:1625-1637.
20. Goudet J. 1995. FSTAT (vers. 1.2): a computer program to calculate F-statistics. J Hered. 86:485-486.
21. Goudet J, Perrin N, Waser P. 2002. Tests for sex-biased dispersal using bi-parentally inherited genetic markers. Mol Ecol. 11:1103-1114.
22. Greenwood PJ. 1980. Mating systems, philopatry and dispersal in birds and mammals. Anim Behav. 28:1140-1162.
23. Hammond RL, Lawson Handley LJ, Winney BJ, Bruford MW, Perrin N. 2006. Genetic evidence for female-biased dispersal and gene flow in a polygynous primate. Proc R Soc Lond B Biol Sci. 273:479-484.
24. Hardy OJ, Charbonnel N, Freville H, Heuertz M. 2003. Microsatellite allele sizes: a simple test to assess their significance on genetic differentiation. Genetics. 163:1467-1482.
25. Hardy OJ, Vekemans X. 2002. SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Mol Ecol Notes. 2:618-620.
26. Kalinowski ST, Taper ML, Marshall TC. 2007. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol Ecol. 16:1099-11006
27. Keyghobadi N, Roland J, Strobeck C. 1999. Influence of landscape on the population genetic structure of the alpine butterfly Parnaussius smintheus (Papilionidae). Mol Ecol. 8:1481-1495.
28. KoenigWD,Van VurenD,Hooge PN. 1996.Detectability, philopatry, and the distribution of dispersal distances in vertebrates.Trends EcolEvol. 11:514-517.
29. Lada H, Thomson JR, MacNally R, Taylor AC. 2008. Impacts of massive landscape change on a carnivorous marsupial in south-eastern Australia: inferences from landscape genetics analysis. J Appl Ecol. 45:1732-1741.
30. Lawson Handley LJ, Perrin N. 2007. Advances in our understanding of mammalian sex-biased dispersal. Mol Ecol. 16:1559-1578.
31. Lindsay DL, Barr KR, Lance RF, Tweddale SA, Hayden TJ, Leberg PL. 2008. Habitat fragmentation and genetic diversity of an endangered, migratory songbird, the golden-cheeked warbler (Dendroica chrysoparia). Mol Ecol. 17:2122-2133.
32. Loew S. 1999. Sex-biased dispersal in eastern chipmunks, Tamias striatus. Evol Ecol. 13:557-577.
33. Manel S, Schwartz MK, Luikart G, Taberlet P. 2003. Landscape genetics: combining landscape ecology and population genetics. Trends Ecol Evol. 18:189-197.
34. Manni F, Guerard E, Heyer E. 2004. Geographic patterns of (genetic, morphologic, linguistic) variation: how barriers can be detected by "Monmonier's algorithm". Hum Biol. 76:173-190.
35. Mantel N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27:209-220.
36. Marshall TC, Slate J, Kruuk LEB, Pemberton JM. 1998. Statistical confidence for likelihood-based paternity inference in natural populations. Mol Ecol. 7:639-655.
37. McDonald DB, Potts WK, Fitzpatrick JW, Woolfenden GE. 1999. Contrasting genetic structures in sister species of North American scrubjays. Proc R Soc Lond B Biol Sci. 266:1117-1125.
38. McLoughlin PD, Paetkau D, Duda M, Boutin S. 2004. Genetic diversity and relatedness of boreal caribou populations in western Canada. Biol Conserv. 118:593-598.
39. McNutt JW. 1996. Sex-biased dispersal in African wild dogs, Lycaon pictus. Anim Behav. 52:1067-1077.
40. Mills S, Lunt DH, Gomez A. 2007. Global isolation by distance despite strong regional phylogeography in a small metazoan. BMC Evol Biol. 7:225-235.
41. Nei M, Takezaki N. 1996. The root of the phylogenetic tree of human populations. Mol Biol Evol. 13:170-177.
42. Paetkau D, Slade R, Burdens M, Estoup A. 2004. Genetic assignment methods for the direct, real-time estimation of migration rate: a simulationbased exploration of accuracy and power. Mol Ecol. 13:55-65.
43. Pérez-Espona S, Pérez-Barberia FJ, McLeod JE, Jiggins CD, Gordon IF, Pemberton JM. 2008. Landscape features affect gene flow of Scottish Highland red deer (Cervus elaphus). Mol Ecol. 17:981-996.
44. Peters MB, Glenn JL, Svete P, Hagen C, Tsyusko OV, DeCoursey P, Lieutenant-Gosselin M, Garant D, Glenn TC. 2007. Development and characterization of microsatellite loci in the eastern chipmunk (Tamias striatus). Mol Ecol Notes. 7:877-879.
45. Pogson GH, Taggart CT, Mesa KA, Boutilier RG. 2001. Isolation by distance in the Atlantic cod, Gadus morhua, at large and small geographic scales. Evolution. 55:131-146.
46. Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics. 155:945-959.
47. Rice WR. 1989. Analyzing tables of statistical tests. Evolution. 43:223-225.
48. Rowe KC, Heske EJ, Brown PW, Paige KN. 2004. Surviving the ice: Northern refugia and postglacial colonization. Proc Natl Acad Sci USA. 101:10355-10359.
49. Rousset F. 1997. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics. 145:1219-1228.
50. Schweizer M, Excoffier L, Heckel G. 2007. Fine-scale genetic structure and dispersal in the common vole (Microtus arvalis). Mol Ecol. 16: 2463-2473.
51. Slatkin M. 1985. Gene flow in natural populations. Annu Rev Ecol Syst. 16:393-430.
52. Slatkin M. 1987. Gene flow and the geographic structure of natural populations. Science. 236:787-792.
53. Slatkin M. 1993. Isolation by distance in equilibrium and non-equilibrium populations. Evolution. 47:264-279.
54. Sork VL, Nason J, Campbell DR, Fernandez JF. 1999. Landscape approaches to historical and contemporary gene flow in plants. Trends Ecol Evol. 14:219-224.
55. Spear SF, Peterson CR, Matocq MD, Storfer A. 2005. Landscape genetics of the blotched tiger salamander (Ambystoma tigrinum melanostictum). Mol Ecol. 14:2553-2564.
56. Storfer A, Murphy MA, Evans JS, Goldberg CS, Robinson S, Spear SF, Dezzani R, Delmelle E, Vierling L, Waits LP. 2007. Putting the 'landscape' in landscape genetics. Heredity. 98:128-142.
57. Takezaki N, Nei M. 1996. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics. 144:389-399.
58. Trénel P, Hansen MM, Normand S, Borchsenius F. 2008. Landscape genetics, historical isolation and cross-Andean gene flow in the wax palm, Ceroxylon echinulatum (Arecaceae). Mol Ecol. 17:3528-3540.
59. Vignieri SN. 2005. Streams over mountains: influence of riparian connectivity on gene flow in the Pacific jumping mouse (Zapus trinotatus). Mol Ecol. 14:1925-1937.
60. Waser PM, Elliott LF. 1991. Dispersal and genetic structure in kangaroo rats. Evolution. 45:935-943.
61. Weir BS, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution. 38:1358-1370.
62. Whitehead H, Dillon M, Dufault S, Weilgart L, Wright J. 1998. Nongeographically based population structure of South Pacific sperm whales: dialects, fluke-markings and genetics. J Anim Ecol. 67:253-262.
63. Whitlock MC, McCauley DE. 1999. Indirect measures of gene flow and migration FST≠ 1/(4 Nm+1). Heredity. 82:117-125.
64. Wright S. 1943. Isolation by distance. Genetics. 28:114-138.