-
1
-
-
0025370815
-
Dominant forces in protein folding
-
DOI 10.1021/bi00483a001
-
K. A. Dill, Biochemistry BICHAW 0006-2960 29, 7133 (1990). 10.1021/bi00483a001 (Pubitemid 20230041)
-
(1990)
Biochemistry
, vol.29
, Issue.31
, pp. 7133-7155
-
-
Dill, K.A.1
-
2
-
-
0026487174
-
-
JMOBAK 0022-2836,. 10.1016/0022-2836(92)91058-W
-
D. F. Sticke, L. G. Presta, K. A. Dill, and G. D. Rose, J. Mol. Biol. JMOBAK 0022-2836 226, 1143 (1992). 10.1016/0022-2836(92)91058-W
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 1143
-
-
Sticke, D.F.1
Presta, L.G.2
Dill, K.A.3
Rose, G.D.4
-
4
-
-
0031592945
-
Common core structure of amyloid fibrils by synchrotron X-ray diffraction
-
DOI 10.1006/jmbi.1997.1348
-
M. Sunde, L. C. Serpell, M. Bartlam, P. E. Fraser, M. B. Pepys, and C. C. F. Blake, J. Mol. Biol. JMOBAK 0022-2836 273, 729 (1997). 10.1006/jmbi.1997. 1348 (Pubitemid 27488813)
-
(1997)
Journal of Molecular Biology
, vol.273
, Issue.3
, pp. 729-739
-
-
Sunde, M.1
Serpell, L.C.2
Bartlam, M.3
Fraser, P.E.4
Pepys, M.B.5
Blake, C.C.F.6
-
5
-
-
13144259646
-
Amyloid fibril formation by an SH3 domain
-
DOI 10.1073/pnas.95.8.4224
-
J. I. Guijarro, M. Sunde, J. A. Jones, I. D. Campbell, and C. M. Dobson, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 95, 4224 (1998). 10.1073/pnas.95.8.4224 (Pubitemid 28207893)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.8
, pp. 4224-4228
-
-
Inaki Guijarro, J.1
Sunde, M.2
Jones, J.A.3
Campbelli, I.D.4
Dobson, C.M.5
-
6
-
-
33644540477
-
-
PNASA6 0027-8424,. 10.1073/pnas.0508121103
-
M. Wang, T. E. Wales, and M. C. Fitzgerald, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 103, 2600 (2006). 10.1073/pnas.0508121103
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 2600
-
-
Wang, M.1
Wales, T.E.2
Fitzgerald, M.C.3
-
7
-
-
34447297323
-
Energetics of Protein Folding
-
DOI 10.1016/j.jmb.2007.05.078, PII S0022283607007371
-
R. L. Baldwin, J. Mol. Biol. JMOBAK 0022-2836 371, 283 (2007). 10.1016/j.jmb.2007.05.078 (Pubitemid 47049810)
-
(2007)
Journal of Molecular Biology
, vol.371
, Issue.2
, pp. 283-301
-
-
Baldwin, R.L.1
-
8
-
-
0037154980
-
Protein folding and unfolding at atomic resolution
-
DOI 10.1016/S0092-8674(02)00620-7
-
A. R. Fersht and V. Daggett, Cell CELLB5 0092-8674 108, 573 (2002). 10.1016/S0092-8674(02)00620-7 (Pubitemid 34260881)
-
(2002)
Cell
, vol.108
, Issue.4
, pp. 573-582
-
-
Fersht, A.R.1
Daggett, V.2
-
9
-
-
20544464457
-
How well can simulation predict protein folding kinetics and thermodynamics?
-
DOI 10.1146/annurev.biophys.34.040204.144447
-
C. D. Snow, E. J. Sorin, Y. Min Rhee, and V. S. Pande, Annu. Rev. Biophys. Biomol. Struct. ABBSE4 1056-8700 34, 43 (2005). 10.1146/annurev. biophys.34.040204.144447 (Pubitemid 40847718)
-
(2005)
Annual Review of Biophysics and Biomolecular Structure
, vol.34
, pp. 43-69
-
-
Snow, C.D.1
Sorin, E.J.2
Rhee, Y.M.3
Pande, V.S.4
-
10
-
-
33645855864
-
-
APCHA2 0065-3233,. 10.1016/S0065-3233(05)72001-5
-
A. V. Morozov and T. Kortemme, Adv. Protein Chem. APCHA2 0065-3233 72, 1 (2005). 10.1016/S0065-3233(05)72001-5
-
(2005)
Adv. Protein Chem.
, vol.72
, pp. 1
-
-
Morozov, A.V.1
Kortemme, T.2
-
11
-
-
33750945327
-
A backbone-based theory of protein folding
-
DOI 10.1073/pnas.0606843103
-
G. D. Rose, P. J. Fleming, J. R. Banavar, and A. Maritan, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 103, 16623 (2006). 10.1073/pnas.0606843103 (Pubitemid 44737304)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.45
, pp. 16623-16633
-
-
Rose, G.D.1
Fleming, P.J.2
Banavar, J.R.3
Maritan, A.4
-
12
-
-
0000019986
-
-
JSTPBS 0022-4715,. 10.1007/BF01012315
-
N. G, J. Stat. Phys. JSTPBS 0022-4715 30, 413 (1983). 10.1007/BF01012315
-
(1983)
J. Stat. Phys.
, vol.30
, pp. 413
-
-
G, N.1
-
13
-
-
11244291006
-
Folding Trp-cage to NMR resolution native structure using a coarse-grained protein model
-
DOI 10.1529/biophysj.104.046375
-
F. Ding, S. V. Buldyrev, and N. V. Dokholyan, Biophys. J. BIOJAU 0006-3495 88, 147 (2005). 10.1529/biophysj.104.046375 (Pubitemid 40070665)
-
(2005)
Biophysical Journal
, vol.88
, Issue.1
, pp. 147-155
-
-
Ding, F.1
Buldyrev, S.V.2
Dokholyan, N.V.3
-
14
-
-
33646064742
-
-
18PLAF 0887-3585,. 10.1002/prot.20846
-
H. Imamura and J. Z. Y. Chen, Proteins 18PLAF 0887-3585 63, 555 (2006). 10.1002/prot.20846
-
(2006)
Proteins
, vol.63
, pp. 555
-
-
Imamura, H.1
Chen, J.Z.Y.2
-
15
-
-
62449263858
-
-
PBHIAT 1478-3975,. 10.1088/1478-3975/6/1/010301
-
R. V. Pappu and R. Nussinov, Phys. Biol. PBHIAT 1478-3975 6, 010301 (2009). 10.1088/1478-3975/6/1/010301
-
(2009)
Phys. Biol.
, vol.6
, pp. 010301
-
-
Pappu, R.V.1
Nussinov, R.2
-
16
-
-
0037379625
-
-
PHYADX 0378-4371,. 10.1016/S0378-4371(02)01789-2
-
J. Z. Y. Chen and H. Imamura, Physica A PHYADX 0378-4371 321, 181 (2003). 10.1016/S0378-4371(02)01789-2
-
(2003)
Physica A
, vol.321
, pp. 181
-
-
Chen, J.Z.Y.1
Imamura, H.2
-
18
-
-
2542617639
-
Geometry and symmetry presculpt the free-energy landscape of proteins
-
DOI 10.1073/pnas.0402525101
-
T. X. Hoang, A. Trovato, F. Seno, J. R. Banavar, and A. Maritan, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 101, 7960 (2004). 10.1073/pnas. 0402525101 (Pubitemid 38698036)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.21
, pp. 7960-7964
-
-
Hoang, T.X.1
Trovato, A.2
Seno, F.3
Banavar, J.R.4
Maritan, A.5
-
19
-
-
0032424129
-
Virtual atom representation of hydrogen bonds in minimal off-lattice models of α helices: Effect on stability, cooperativity and kinetics
-
DOI 10.1016/S1359-0278(98)00065-0
-
D. K. Klimov, M. R. Betancourt, and D. Thirumalai, Folding Des. FODEFH 1359-0278 3, 481 (1998). 10.1016/S1359-0278(98)00065-0 (Pubitemid 29023614)
-
(1998)
Folding and Design
, vol.3
, Issue.6
, pp. 481-496
-
-
Klimov, D.K.1
Betancourt, M.R.2
Thirumalai, D.3
-
20
-
-
34247533375
-
Evaluation of coarse grained models for hydrogen bonds in proteins
-
DOI 10.1002/jcc.20619
-
D. De Sancho and A. Rey, J. Comput. Chem. JCCHDD 0192-8651 28, 1187 (2007). 10.1002/jcc.20619 (Pubitemid 46652992)
-
(2007)
Journal of Computational Chemistry
, vol.28
, Issue.7
, pp. 1187-1199
-
-
De Sancho, D.1
Rey, A.2
-
22
-
-
1642534609
-
An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state
-
DOI 10.1110/ps.03348304
-
C. Zhang, S. Liu, H. Zhou, and Y. Zhou, Protein Sci. PRCIEI 0961-8368 13, 400 (2004). 10.1110/ps.03348304 (Pubitemid 38124961)
-
(2004)
Protein Science
, vol.13
, Issue.2
, pp. 400-411
-
-
Zhang, C.1
Liu, S.2
Zhou, H.3
Zhou, Y.4
-
23
-
-
0033954256
-
-
NARHAD 0305-1048,. 10.1093/nar/28.1.235
-
H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P. E. Bourne, Nucleic Acids Res. NARHAD 0305-1048 28, 235 (2000). 10.1093/nar/28.1.235
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
24
-
-
0020997912
-
-
BIPMAA 0006-3525,. 10.1002/bi360221211
-
W. Kabsch and C. Sander, Biopolymers BIPMAA 0006-3525 22, 2577 (1983). 10.1002/bip.360221211
-
(1983)
Biopolymers
, vol.22
, pp. 2577
-
-
Kabsch, W.1
Sander, C.2
-
25
-
-
0037133138
-
Contribution of hydrogen bonding to protein stability estimated from isotope effects
-
DOI 10.1021/bi011307t
-
Z. Shi, B. A. Krantz, N. Kallenchach, and T. R. Sosnick, Biochemistry BICHAW 0006-2960 41, 2120 (2002). 10.1021/bi011307t (Pubitemid 34160871)
-
(2002)
Biochemistry
, vol.41
, Issue.7
, pp. 2120-2129
-
-
Shi, Z.1
Krantz, B.A.2
Kallenbach, N.3
Sosnick, T.R.4
-
26
-
-
0031578972
-
-
CHPLBC 0009-2614,. 10.1016/S0009-2614(97)01198-6
-
U. H. E. Hansmann, Chem. Phys. Lett. CHPLBC 0009-2614 281, 140 (1997). 10.1016/S0009-2614(97)01198-6
-
(1997)
Chem. Phys. Lett.
, vol.281
, pp. 140
-
-
Hansmann, U.H.E.1
-
27
-
-
34247861746
-
Thermodynamics of Go-type models for protein folding
-
DOI 10.1063/1.2064888, 154903
-
L. Prieto, D. de Sancho, and A. Rey, J. Chem. Phys. JCPSA6 0021-9606 123, 154903 (2005). 10.1063/1.2064888 (Pubitemid 41721883)
-
(2005)
Journal of Chemical Physics
, vol.123
, Issue.15
, pp. 1-8
-
-
Prieto, L.1
De Sancho, D.2
Rey, A.3
-
28
-
-
9744283465
-
-
MAMOBX 0024-9297,. 10.1021/ma049338u
-
V. Varshney, T. E. Dirama, T. Z. Sen, and G. A. Carri, Macromolecules MAMOBX 0024-9297 37, 8794 (2004). 10.1021/ma049338u
-
(2004)
Macromolecules
, vol.37
, pp. 8794
-
-
Varshney, V.1
Dirama, T.E.2
Sen, T.Z.3
Carri, G.A.4
-
29
-
-
67649494492
-
-
JPCBFK 1089-5647,. 10.1021/jp901540t
-
R. B. Best and G. Hummer, J. Phys. Chem. B JPCBFK 1089-5647 113, 9004 (2009). 10.1021/jp901540t
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 9004
-
-
Best, R.B.1
Hummer, G.2
-
30
-
-
0001075603
-
-
JCPSA6 0021-9606,. 10.1063/1.478169
-
U. H. E. Hansmann and Y. Okamoto, J. Chem. Phys. JCPSA6 0021-9606 110, 1267 (1999). 10.1063/1.478169
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 1267
-
-
Hansmann, U.H.E.1
Okamoto, Y.2
-
31
-
-
0026525048
-
-
JMOBAK 0022-2836,. 10.1016/0022-2836(92)90264-K
-
V. Daggett and M. Levitt, J. Mol. Biol. JMOBAK 0022-2836 223, 1121 (1992). 10.1016/0022-2836(92)90264-K
-
(1992)
J. Mol. Biol.
, vol.223
, pp. 1121
-
-
Daggett, V.1
Levitt, M.2
-
32
-
-
34548314208
-
The helix-coil transition revisited
-
DOI 10.1002/prot.21492
-
Y. Chen, Y. Zhou, and J. Ding, Proteins 18PLAF 0887-3585 69, 58 (2007). 10.1002/prot.21492 (Pubitemid 47339139)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.69
, Issue.1
, pp. 58-68
-
-
Chen, Y.1
Zhou, Y.2
Ding, J.3
-
33
-
-
0026490069
-
-
PNASA6 0027-8424,. 10.1073/pnas.89.23.11513
-
T. Head-Gordon, F. H. Stillinger, M. H. Wright, and D. M. Gay, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 89, 11513 (1992). 10.1073/pnas.89.23. 11513
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 11513
-
-
Head-Gordon, T.1
Stillinger, F.H.2
Wright, M.H.3
Gay, D.M.4
-
34
-
-
0033274285
-
-
AJPIAS 0002-9505,. 10.1119/1.19107
-
V. A. Bloomfield, Am. J. Phys. AJPIAS 0002-9505 67, 1212 (1999). 10.1119/1.19107
-
(1999)
Am. J. Phys.
, vol.67
, pp. 1212
-
-
Bloomfield, V.A.1
-
35
-
-
0029878720
-
VMD: Visual molecular dynamics
-
DOI 10.1016/0263-7855(96)00018-5
-
W. Humphrey, A. Dalke, and K. Schulten, J. Mol. Graphics JMGRDV 0263-7855 14, 33 (1996). 10.1016/0263-7855(96)00018-5 (Pubitemid 26152973)
-
(1996)
Journal of Molecular Graphics
, vol.14
, Issue.1
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
37
-
-
0035849540
-
On the mechanism of α-helix to β-sheet transition in the recombinant prion protein
-
DOI 10.1021/bi010232q
-
M. Morillas, D. L. Vanik, and W. K. Surewicz, Biochemistry BICHAW 0006-2960 40, 6982 (2001). 10.1021/bi010232q (Pubitemid 32538246)
-
(2001)
Biochemistry
, vol.40
, Issue.23
, pp. 6982-6987
-
-
Morillas, M.1
Vanik, D.L.2
Surewicz, W.K.3
-
38
-
-
0033661642
-
-
MTHSEK 1022-1344,. 10.1002/1521-3919(20001101)9:8<523::AID- MATS523>3.0.CO;2-I
-
B. Ilkowski, J. Skolnick, and A. Kolinski, Macromol. Theory Simul. MTHSEK 1022-1344 9, 523 (2000). 10.1002/1521-3919(20001101)9:8<523::AID- MATS523>3.0.CO;2-I
-
(2000)
Macromol. Theory Simul.
, vol.9
, pp. 523
-
-
Ilkowski, B.1
Skolnick, J.2
Kolinski, A.3
-
39
-
-
84990879029
-
-
PLEEE8 1063-651X,. 10.1103/PhysRevE.68.041911
-
Y. Peng and U. H. E. Hansmann, Phys. Rev. E PLEEE8 1063-651X 68, 041911 (2003). 10.1103/PhysRevE.68.041911
-
(2003)
Phys. Rev. e
, vol.68
, pp. 041911
-
-
Peng, Y.1
Hansmann, U.H.E.2
-
40
-
-
0035961329
-
The structural basis of protein folding and its links with human disease
-
DOI 10.1098/rstb.2000.0758
-
C. M. Dobson, Philos. Trans. R. Soc. London, Ser. B PTRBAE 0962-8436 356, 133 (2001). 10.1098/rstb.2000.0758 (Pubitemid 32241461)
-
(2001)
Philosophical Transactions of the Royal Society B: Biological Sciences
, vol.356
, Issue.1406
, pp. 133-145
-
-
Dobson, C.M.1
Swoboda, B.E.P.2
Joniau, M.3
Weissman, C.4
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