-
1
-
-
34247953814
-
More is different: Broken symmetry and nature of hierarchical structure of science
-
Anderson PW. 1972. More is different: broken symmetry and nature of hierarchical structure of science. Science 177:393-96
-
(1972)
Science
, vol.177
, pp. 393-396
-
-
Anderson, P.W.1
-
2
-
-
0020769932
-
Suggested model for prebiotic evolution: The use of chaos
-
Anderson PW. 1983. Suggested model for prebiotic evolution: the use of chaos. Proc. Natl. Acad. Sci. USA 80:3386-90
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 3386-3390
-
-
Anderson, P.W.1
-
3
-
-
0015859467
-
Principles that govern folding of protein chains
-
Anfinsen CB. 1973. Principles that govern folding of protein chains. Science 181:223-30
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
4
-
-
34347226009
-
-
Deleted in proof
-
Deleted in proof
-
-
-
-
5
-
-
34347271038
-
-
Deleted in proof
-
Deleted in proof
-
-
-
-
6
-
-
0034604105
-
A surprising simplicity to protein folding
-
Baker D. 2000. A surprising simplicity to protein folding. Nature 405:39-42
-
(2000)
Nature
, vol.405
, pp. 39-42
-
-
Baker, D.1
-
7
-
-
0038342806
-
Geometry of compact tubes and protein structures
-
Banavar JR, Flammini A, Marenduzzo D, Maritan A, Trovato A. 2003. Geometry of compact tubes and protein structures. Complexus 1:4-13
-
(2003)
Complexus
, vol.1
, pp. 4-13
-
-
Banavar, J.R.1
Flammini, A.2
Marenduzzo, D.3
Maritan, A.4
Trovato, A.5
-
9
-
-
41349118556
-
Unified perspective on proteins: A physics approach
-
Banavar JR, Hoang TX, Maritan A, Seno F, Trovato A. 2004. Unified perspective on proteins: a physics approach. Phys. Rev. E 70:041905
-
(2004)
Phys. Rev. E
, vol.70
, pp. 041905
-
-
Banavar, J.R.1
Hoang, T.X.2
Maritan, A.3
Seno, F.4
Trovato, A.5
-
10
-
-
0035283155
-
Computational approach to the protein-folding problem
-
Banavar JR, Maritan A. 2001. Computational approach to the protein-folding problem. Proteins 42:433-35
-
(2001)
Proteins
, vol.42
, pp. 433-435
-
-
Banavar, J.R.1
Maritan, A.2
-
11
-
-
0037847500
-
Colloquium: Geometrical approach to protein folding: a tube picture
-
Banavar JR, Maritan A. 2003. Colloquium: geometrical approach to protein folding: a tube picture. Rev. Mod. Phys. 75:23-34
-
(2003)
Rev. Mod. Phys
, vol.75
, pp. 23-34
-
-
Banavar, J.R.1
Maritan, A.2
-
13
-
-
0011429211
-
Structure of proteins
-
Bernal JD. 1939. Structure of proteins. Nature 143:663-67
-
(1939)
Nature
, vol.143
, pp. 663-667
-
-
Bernal, J.D.1
-
14
-
-
0025363984
-
Deciphering the message in protein sequences: Tolerance to amino acid substitutions
-
Bowie JU, Reidhaar-Olson JF, Lim WA, Sauer RT. 1990. Deciphering the message in protein sequences: tolerance to amino acid substitutions. Science 247:1306-10
-
(1990)
Science
, vol.247
, pp. 1306-1310
-
-
Bowie, J.U.1
Reidhaar-Olson, J.F.2
Lim, W.A.3
Sauer, R.T.4
-
15
-
-
0027265713
-
The role of turns in the structure of an alpha-helical protein
-
Brunet AP, Huang ES, Huffine ME, Loeb JE, Weltman RJ, et al. 1993. The role of turns in the structure of an alpha-helical protein. Nature 364:355-58
-
(1993)
Nature
, vol.364
, pp. 355-358
-
-
Brunet, A.P.1
Huang, E.S.2
Huffine, M.E.3
Loeb, J.E.4
Weltman, R.J.5
-
16
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein-folding: A synthesis
-
Bryngelson JD, Onuchic JN, Socci ND, Wolynes PG. 1995. Funnels, pathways, and the energy landscape of protein-folding: a synthesis. Proteins 21:167-95
-
(1995)
Proteins
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
17
-
-
0023449962
-
Spin-glasses and the statistical mechanics of protein folding
-
Bryngelson JD, Wolynes PG. 1987. Spin-glasses and the statistical mechanics of protein folding. Proc. Natl. Acad. Sci. USA 84:7524-28
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 7524-7528
-
-
Bryngelson, J.D.1
Wolynes, P.G.2
-
19
-
-
0025150383
-
Origins of structure in globular proteins
-
Chan HS, Dill KA. 1990. Origins of structure in globular proteins. Proc. Natl. Acad. Sci. USA 87:6388-92
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 6388-6392
-
-
Chan, H.S.1
Dill, K.A.2
-
20
-
-
0000868733
-
The protein folding problem
-
Chan HS, Dill KA. 1993. The protein folding problem. Phys. Today 46:24-32
-
(1993)
Phys. Today
, vol.46
, pp. 24-32
-
-
Chan, H.S.1
Dill, K.A.2
-
21
-
-
0027122748
-
Proteins: 1000 families for the molecular biologist
-
Chothia C. 1992. Proteins: 1000 families for the molecular biologist. Nature 357:543-44
-
(1992)
Nature
, vol.357
, pp. 543-544
-
-
Chothia, C.1
-
22
-
-
0025277191
-
The classifications and origins of protein folding patterns
-
Chothia C, Finkelstein AV. 1990. The classifications and origins of protein folding patterns. Annu. Rev. Biochem. 59:1007-39
-
(1990)
Annu. Rev. Biochem
, vol.59
, pp. 1007-1039
-
-
Chothia, C.1
Finkelstein, A.V.2
-
26
-
-
0030793767
-
De novo protein design: Fully automated sequence selection
-
Dahiyat BI, Mayo SL. 1997. De novo protein design: fully automated sequence selection. Science 278:82-87
-
(1997)
Science
, vol.278
, pp. 82-87
-
-
Dahiyat, B.I.1
Mayo, S.L.2
-
27
-
-
0028218304
-
Folded proteins occur frequently in libraries of random amino acid sequences
-
Davidson AR, Sauer RT. 1994. Folded proteins occur frequently in libraries of random amino acid sequences. Proc. Natl. Acad. Sci. USA 91:2146-50
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 2146-2150
-
-
Davidson, A.R.1
Sauer, R.T.2
-
30
-
-
0035932508
-
Laws of form revisited
-
Denton M, Marshall C. 2001. Laws of form revisited. Nature 410:417-17
-
(2001)
Nature
, vol.410
, pp. 417-417
-
-
Denton, M.1
Marshall, C.2
-
31
-
-
1842298212
-
From Levinthal to pathways to funnels
-
Dill KA, Chan HS. 1997. From Levinthal to pathways to funnels. Nat. Struct. Biol. 4:10-19
-
(1997)
Nat. Struct. Biol
, vol.4
, pp. 10-19
-
-
Dill, K.A.1
Chan, H.S.2
-
32
-
-
0037317334
-
-
Dobson CM. 2003. Protein folding and disease: a view from the first Horizon Symposium. Nat. Rev. Drug Discov. 2:154-60
-
Dobson CM. 2003. Protein folding and disease: a view from the first Horizon Symposium. Nat. Rev. Drug Discov. 2:154-60
-
-
-
-
33
-
-
3242785264
-
Prediction of the absolute aggregation rates of amyloidogenic polypeptide chains
-
Dubay KF, Pawar AP, Chiti F, Zurdo J, Dobson CM, Vendruscolo M. 2004. Prediction of the absolute aggregation rates of amyloidogenic polypeptide chains. J. Mol. Biol., 341:1317
-
(2004)
J. Mol. Biol
, vol.341
, pp. 1317
-
-
Dubay, K.F.1
Pawar, A.P.2
Chiti, F.3
Zurdo, J.4
Dobson, C.M.5
Vendruscolo, M.6
-
34
-
-
0141480054
-
Funnel sculpting for in silico assembly of secondary structure elements of proteins
-
Fain B, Levitt M. 2003. Funnel sculpting for in silico assembly of secondary structure elements of proteins. Proc. Natl. Acad. Sci. USA 100:10700-5
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 10700-10705
-
-
Fain, B.1
Levitt, M.2
-
37
-
-
13244258557
-
Are proteins made from a limited parts list?
-
Fitzkee NC, Fleming PJ, Gong H, Panasik N, Street TO, Rose GD. 2005. Are proteins made from a limited parts list? Trends Biochem. Sci. 30:73-80
-
(2005)
Trends Biochem. Sci
, vol.30
, pp. 73-80
-
-
Fitzkee, N.C.1
Fleming, P.J.2
Gong, H.3
Panasik, N.4
Street, T.O.5
Rose, G.D.6
-
38
-
-
31144460030
-
Functional amyloid formation within mammalian tissue
-
Fowler DM, Koulov AV, Alory-Jost C, Marks MS, Balch WE, Kelly JW. 2006. Functional amyloid formation within mammalian tissue. PLoS Biol. 4:0100-7
-
(2006)
PLoS Biol
, vol.4
, pp. 0100-0107
-
-
Fowler, D.M.1
Koulov, A.V.2
Alory-Jost, C.3
Marks, M.S.4
Balch, W.E.5
Kelly, J.W.6
-
39
-
-
0020972782
-
Theoretical studies of protein folding
-
Gō N. 1983. Theoretical studies of protein folding. Annu. Rev. Biophys. Bioeng. 12:183-210
-
(1983)
Annu. Rev. Biophys. Bioeng
, vol.12
, pp. 183-210
-
-
Gō, N.1
-
41
-
-
0025040232
-
De novo design, expression, and characterization of Felix: A four-helix bundle protein of native-like sequence
-
Hecht MH, Richardson JS, Richardson DC, Ogden RC. 1990. De novo design, expression, and characterization of Felix: a four-helix bundle protein of native-like sequence. Science 249:884-91
-
(1990)
Science
, vol.249
, pp. 884-891
-
-
Hecht, M.H.1
Richardson, J.S.2
Richardson, D.C.3
Ogden, R.C.4
-
42
-
-
0026552361
-
Folding and function of a t4 lysozyme containing 10 consecutive alanines illustrate the redundancy of information in an amino acid sequence
-
Heinz DW, Baase WA, Matthews BW. 1992. Folding and function of a t4 lysozyme containing 10 consecutive alanines illustrate the redundancy of information in an amino acid sequence. Proc. Natl. Acad. Sci. USA 89:3751-55
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 3751-3755
-
-
Heinz, D.W.1
Baase, W.A.2
Matthews, B.W.3
-
43
-
-
0025004291
-
Crystal-structure of α-1: Implications for protein design
-
Hill CP, Anderson DH, Wesson L, DeGrado WF, Eisenberg D. 1990. Crystal-structure of α-1: implications for protein design. Science 249:543-46
-
(1990)
Science
, vol.249
, pp. 543-546
-
-
Hill, C.P.1
Anderson, D.H.2
Wesson, L.3
DeGrado, W.F.4
Eisenberg, D.5
-
44
-
-
33646466620
-
Unified perspective on proteins: A physics approach
-
Hoang TX, Marsella L, Trovato A, Seno F, Banavar JR, Maritan A. 2006. Unified perspective on proteins: a physics approach. Proc. Natl. Acad. Sci. USA 103:6883-88
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 6883-6888
-
-
Hoang, T.X.1
Marsella, L.2
Trovato, A.3
Seno, F.4
Banavar, J.R.5
Maritan, A.6
-
45
-
-
2542617639
-
Geometry and symmetry presculpt the free-energy landscape of proteins
-
Hoang TX, Trovato A, Seno F, Banavar JR, Maritan A. 2004. Geometry and symmetry presculpt the free-energy landscape of proteins. Proc. Natl. Acad. Sci. USA 101:7960-64
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7960-7964
-
-
Hoang, T.X.1
Trovato, A.2
Seno, F.3
Banavar, J.R.4
Maritan, A.5
-
46
-
-
0031000649
-
An evolutionary treasure: Unification of a broad set of amidohydrolases related to urease
-
Holm L, Sander C. 1997. An evolutionary treasure: unification of a broad set of amidohydrolases related to urease. Proteins 28:72-82
-
(1997)
Proteins
, vol.28
, pp. 72-82
-
-
Holm, L.1
Sander, C.2
-
47
-
-
0020118274
-
Neural networks and physical systems with emergent collective computational abilities
-
Hopfield JJ. 1982. Neural networks and physical systems with emergent collective computational abilities. Proc. Natl. Acad. Sci. USA 79:2554-58
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 2554-2558
-
-
Hopfield, J.J.1
-
49
-
-
23444436172
-
Protein design by binary patterning of polar and nonpolar amino acids
-
Kamtekar S, Schiffer JM, Xiong HY, Babik JM, Hecht MH. 1993. Protein design by binary patterning of polar and nonpolar amino acids. Science 262:1680-85
-
(1993)
Science
, vol.262
, pp. 1680-1685
-
-
Kamtekar, S.1
Schiffer, J.M.2
Xiong, H.Y.3
Babik, J.M.4
Hecht, M.H.5
-
52
-
-
0025908265
-
The role of internal packing interactions in determining the structure and stability of a protein
-
Lim WA, Sauer RT. 1991. The role of internal packing interactions in determining the structure and stability of a protein. J. Mol. Biol. 219:359-76
-
(1991)
J. Mol. Biol
, vol.219
, pp. 359-376
-
-
Lim, W.A.1
Sauer, R.T.2
-
53
-
-
0001181898
-
United-residue force field for off-lattice protein-structure simulations. III. Origin of backbone hydrogen-bonding cooperativity in united-residue potentials
-
Liwo A, Kazmierkiewicz R, Czaplewski C, Groth M, Oldziej S, et al. 1998. United-residue force field for off-lattice protein-structure simulations. III. Origin of backbone hydrogen-bonding cooperativity in united-residue potentials. J. Comput. Chem. 19:259-76
-
(1998)
J. Comput. Chem
, vol.19
, pp. 259-276
-
-
Liwo, A.1
Kazmierkiewicz, R.2
Czaplewski, C.3
Groth, M.4
Oldziej, S.5
-
54
-
-
15544372825
-
Physics of thick polymers
-
Marenduzzo D, Flammini A, Trovato A, Banavar JR, Maritan A. 2005. Physics of thick polymers. J. Polym. Sci. B 43:650-79
-
(2005)
J. Polym. Sci. B
, vol.43
, pp. 650-679
-
-
Marenduzzo, D.1
Flammini, A.2
Trovato, A.3
Banavar, J.R.4
Maritan, A.5
-
56
-
-
0027255479
-
Structural and genetic analysis of protein stability
-
Matthews BW. 1993. Structural and genetic analysis of protein stability. Annu. Rev. Biochem. 62:139-60
-
(1993)
Annu. Rev. Biochem
, vol.62
, pp. 139-160
-
-
Matthews, B.W.1
-
58
-
-
0029063717
-
The complexity and accuracy of discrete state models of protein structure
-
Park B, Levitt M. 1995. The complexity and accuracy of discrete state models of protein structure. J. Mol. Biol. 249:493-507
-
(1995)
J. Mol. Biol
, vol.249
, pp. 493-507
-
-
Park, B.1
Levitt, M.2
-
59
-
-
0000573263
-
Configurations of polypeptide chains with favored orientations around single bonds: Two new pleated sheets
-
Pauling L, Corey RB. 1951. Configurations of polypeptide chains with favored orientations around single bonds: two new pleated sheets. Proc. Natl. Acad. Sci. USA 37:729-40
-
(1951)
Proc. Natl. Acad. Sci. USA
, vol.37
, pp. 729-740
-
-
Pauling, L.1
Corey, R.B.2
-
60
-
-
76549252207
-
The structure of proteins: Two hydrogen-bonded helical configurations of the polypeptide chain
-
Pauling L, Corey RB, Branson HR. 1951. The structure of proteins: two hydrogen-bonded helical configurations of the polypeptide chain. Proc. Natl. Acad. Sci. USA 37:205-11
-
(1951)
Proc. Natl. Acad. Sci. USA
, vol.37
, pp. 205-211
-
-
Pauling, L.1
Corey, R.B.2
Branson, H.R.3
-
65
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
Sander C, Schneider R. 1991. Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins 9:56-68
-
(1991)
Proteins
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
66
-
-
0014935646
-
Natural selection and concept of a protein space
-
Smith JM. 1970. Natural selection and concept of a protein space. Nature 225:563-63
-
(1970)
Nature
, vol.225
, pp. 563-563
-
-
Smith, J.M.1
-
67
-
-
25644452032
-
Evolutionary information for specifying a protein fold
-
Socolich M, Lockless SW, Russ WP, Lee H, Gardner KH, Ranganathan R. 2005. Evolutionary information for specifying a protein fold. Nature 437:512-18
-
(2005)
Nature
, vol.437
, pp. 512-518
-
-
Socolich, M.1
Lockless, S.W.2
Russ, W.P.3
Lee, H.4
Gardner, K.H.5
Ranganathan, R.6
-
68
-
-
0033405203
-
A physical basis for protein secondary structure
-
Srinivasan R, Rose GD. 1999. A physical basis for protein secondary structure. Proc. Natl. Acad. Sci. USA 96:14258-63
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 14258-14263
-
-
Srinivasan, R.1
Rose, G.D.2
-
69
-
-
0034691422
-
Mathematics: Best packing in proteins and DNA
-
Stasiak A, Maddocks JH. 2000. Mathematics: best packing in proteins and DNA. Nature 406:251-53
-
(2000)
Nature
, vol.406
, pp. 251-253
-
-
Stasiak, A.1
Maddocks, J.H.2
-
71
-
-
0033757840
-
From structure to function: Approaches and limitations
-
Thornton JM, Todd AE, Milburn D, Borkakoti N, Orengo CA. 2000. From structure to function: approaches and limitations. Nat. Struct. Biol. 7:991-94
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 991-994
-
-
Thornton, J.M.1
Todd, A.E.2
Milburn, D.3
Borkakoti, N.4
Orengo, C.A.5
-
72
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering C, Krause R, Snel B, Cornell M, Oliver SG, et al. 2002. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417:399-403
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
-
73
-
-
0038497542
-
Molecular structure of nucleic acids: A structure for deoxyribose nucleic acid
-
Watson JD, Crick FHC. 1953. Molecular structure of nucleic acids: a structure for deoxyribose nucleic acid. Nature 171:737-38
-
(1953)
Nature
, vol.171
, pp. 737-738
-
-
Watson, J.D.1
Crick, F.H.C.2
-
74
-
-
0344392714
-
Solution structure of a de novo protein from a designed combinatorial library
-
Wei Y, Kim S, Fela D, Baum J, Hecht MH. 2003. Solution structure of a de novo protein from a designed combinatorial library. Proc. Natl. Acad. Sci. USA 100:13270-73
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13270-13273
-
-
Wei, Y.1
Kim, S.2
Fela, D.3
Baum, J.4
Hecht, M.H.5
-
75
-
-
0033613188
-
De novo amyloid proteins from designed combinatorial libraries
-
West MW, Wang WX, Patterson J, Mancia DJ, Beasley JR, Hecht MH. 1999. De novo amyloid proteins from designed combinatorial libraries. Proc. Natl. Acad. Sci. USA 96:11211-16
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 11211-11216
-
-
West, M.W.1
Wang, W.X.2
Patterson, J.3
Mancia, D.J.4
Beasley, J.R.5
Hecht, M.H.6
-
77
-
-
33644553089
-
On the origin and highly likely completeness of single-domain protein structures
-
Zhang Y, Hubner IA, Arakaki AK, Shakhnovich E, Skolnick J. 2006. On the origin and highly likely completeness of single-domain protein structures. Proc. Natl. Acad. Sci. USA 103:2605-10
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 2605-2610
-
-
Zhang, Y.1
Hubner, I.A.2
Arakaki, A.K.3
Shakhnovich, E.4
Skolnick, J.5
-
78
-
-
19744382834
-
Entropically driven helix formation
-
Snir Y, Kamien RD. 2005. Entropically driven helix formation. Science 307:1067
-
(2005)
Science
, vol.307
, pp. 1067
-
-
Snir, Y.1
Kamien, R.D.2
|