-
1
-
-
34548159301
-
Mammalian mitochondrial nucleoids: organizing an independently minded genome
-
Holt I.J., He J., Mao C.C., Boyd-Kirkup J.D., Martinsson P., Sembongi H., Reyes A., Spelbrink J.N. Mammalian mitochondrial nucleoids: organizing an independently minded genome. Mitochondrion 2007, 7:311-321.
-
(2007)
Mitochondrion
, vol.7
, pp. 311-321
-
-
Holt, I.J.1
He, J.2
Mao, C.C.3
Boyd-Kirkup, J.D.4
Martinsson, P.5
Sembongi, H.6
Reyes, A.7
Spelbrink, J.N.8
-
3
-
-
13444256467
-
MITOMAP: a human mitochondrial genome database-2004 update
-
Brandon M.C., Lott M.T., Nguyen K.C., Spolim S., Navathe S.B., Baldi P., Wallace D.C. MITOMAP: a human mitochondrial genome database-2004 update. Nucleic Acids Res. 2005, 33:D611-D613.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Brandon, M.C.1
Lott, M.T.2
Nguyen, K.C.3
Spolim, S.4
Navathe, S.B.5
Baldi, P.6
Wallace, D.C.7
-
4
-
-
33745410626
-
Mitochondrial disease
-
Schapira A.H. Mitochondrial disease. Lancet 2006, 368:70-82.
-
(2006)
Lancet
, vol.368
, pp. 70-82
-
-
Schapira, A.H.1
-
5
-
-
2642580016
-
Premature ageing in mice expressing defective mitochondrial DNA polymerase
-
Trifunovic A., Wredenberg A., Falkenberg M., Spelbrink J., Rovio A., Bruder C., Bohlooly-Y M., Gidlof S., Oldfors A., Wibom R., Tornell J., Jacobs H., Larsson N. Premature ageing in mice expressing defective mitochondrial DNA polymerase. Nature 2004, 429:417-423.
-
(2004)
Nature
, vol.429
, pp. 417-423
-
-
Trifunovic, A.1
Wredenberg, A.2
Falkenberg, M.3
Spelbrink, J.4
Rovio, A.5
Bruder, C.6
Bohlooly-Y, M.7
Gidlof, S.8
Oldfors, A.9
Wibom, R.10
Tornell, J.11
Jacobs, H.12
Larsson, N.13
-
6
-
-
22344456832
-
Mitochondrial DNA mutations, oxidative stress, and apoptosis in mammalian aging
-
Kujoth G.C., Hiona A., Pugh T.D., Someya S., Panzer K., Wohlgemuth S.E., Hofer T., Seo A.Y., Sullivan R., Jobling W.A., Morrow J.D., Van Remmen H., Sedivy J.M., Yamasoba T., Tanokura M., Weindruch R., Leeuwenburgh C., Prolla T.A. Mitochondrial DNA mutations, oxidative stress, and apoptosis in mammalian aging. Science 2005, 309:481-484.
-
(2005)
Science
, vol.309
, pp. 481-484
-
-
Kujoth, G.C.1
Hiona, A.2
Pugh, T.D.3
Someya, S.4
Panzer, K.5
Wohlgemuth, S.E.6
Hofer, T.7
Seo, A.Y.8
Sullivan, R.9
Jobling, W.A.10
Morrow, J.D.11
Van Remmen, H.12
Sedivy, J.M.13
Yamasoba, T.14
Tanokura, M.15
Weindruch, R.16
Leeuwenburgh, C.17
Prolla, T.A.18
-
7
-
-
33750059763
-
Mitochondria-related male infertility
-
Nakada K., Sato A., Yoshida K., Morita T., Tanaka H., Inoue S., Yonekawa H., Hayashi J. Mitochondria-related male infertility. Proc. Natl Acad. Sci. USA 2006, 103:15148-15153.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 15148-15153
-
-
Nakada, K.1
Sato, A.2
Yoshida, K.3
Morita, T.4
Tanaka, H.5
Inoue, S.6
Yonekawa, H.7
Hayashi, J.8
-
9
-
-
34147224324
-
The single-stranded DNA-binding protein of Escherichia coli
-
Meyer R.R., Laine P.S. The single-stranded DNA-binding protein of Escherichia coli. Microbiol. Rev. 1990, 54:342-380.
-
(1990)
Microbiol. Rev.
, vol.54
, pp. 342-380
-
-
Meyer, R.R.1
Laine, P.S.2
-
10
-
-
54349118941
-
SSB as an organizer/mobilizer of genome maintenance complexes
-
Shereda R.D., Kozlov A.G., Lohman T.M., Cox M.M., Keck J.L. SSB as an organizer/mobilizer of genome maintenance complexes. Crit. Rev. Biochem. Mol. Biol. 2008, 43:289-318.
-
(2008)
Crit. Rev. Biochem. Mol. Biol.
, vol.43
, pp. 289-318
-
-
Shereda, R.D.1
Kozlov, A.G.2
Lohman, T.M.3
Cox, M.M.4
Keck, J.L.5
-
11
-
-
59449091270
-
Mechanisms of single-stranded DNA-binding protein functioning in cellular DNA metabolism
-
Pestryakov P.E., Lavrik O.I. Mechanisms of single-stranded DNA-binding protein functioning in cellular DNA metabolism. Biochemistry (Mosc) 2008, 73:1388-1404.
-
(2008)
Biochemistry (Mosc)
, vol.73
, pp. 1388-1404
-
-
Pestryakov, P.E.1
Lavrik, O.I.2
-
12
-
-
2342429459
-
DNA polymerase gamma, the mitochondrial replicase
-
Kaguni L.S. DNA polymerase gamma, the mitochondrial replicase. Annu. Rev. Biochem. 2004, 73:293-320.
-
(2004)
Annu. Rev. Biochem.
, vol.73
, pp. 293-320
-
-
Kaguni, L.S.1
-
13
-
-
0027308839
-
SSB
-
Tiranti V., Rocchi M., DiDonato S., Zeviani M. Cloning of human and rat cDNAs encoding the mitochondrial single-stranded DNA-binding protein. Gene 1993, 126:219-225.
-
(1993)
Gene
, vol.126
, pp. 219-225
-
-
Tiranti, V.1
Rocchi, M.2
DiDonato, S.3
Zeviani, M.4
-
14
-
-
0031567573
-
A common core for binding single-stranded DNA: structural comparison of the single-stranded DNA-binding proteins (SSB) from E. coli and human mitochondria
-
Webster G., Genschel J., Curth U., Urbanke C., Kang C., Hilgenfeld R. A common core for binding single-stranded DNA: structural comparison of the single-stranded DNA-binding proteins (SSB) from E. coli and human mitochondria. FEBS Lett. 1997, 411:313-316.
-
(1997)
FEBS Lett.
, vol.411
, pp. 313-316
-
-
Webster, G.1
Genschel, J.2
Curth, U.3
Urbanke, C.4
Kang, C.5
Hilgenfeld, R.6
-
15
-
-
0031023811
-
Crystal structure of human mitochondrial single-stranded DNA binding protein at 2.4 A resolution
-
Yang C., Curth U., Urbanke C., Kang C. Crystal structure of human mitochondrial single-stranded DNA binding protein at 2.4 A resolution. Nat. Struct. Biol. 1997, 4:153-157.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 153-157
-
-
Yang, C.1
Curth, U.2
Urbanke, C.3
Kang, C.4
-
16
-
-
0028199707
-
Single-stranded-DNA-binding proteins from human mitochondria and Escherichia coli have analogous physicochemical properties
-
Curth U., Urbanke C., Greipel J., Gerberding H., Tiranti V., Zeviani M. Single-stranded-DNA-binding proteins from human mitochondria and Escherichia coli have analogous physicochemical properties. Eur. J. Biochem. 1994, 221:435-443.
-
(1994)
Eur. J. Biochem.
, vol.221
, pp. 435-443
-
-
Curth, U.1
Urbanke, C.2
Greipel, J.3
Gerberding, H.4
Tiranti, V.5
Zeviani, M.6
-
17
-
-
1542677230
-
TWINKLE Has 5'->3' DNA helicase activity and is specifically stimulated by mitochondrial single-stranded DNA-binding protein
-
Korhonen J.A., Gaspari M., Falkenberg M. TWINKLE Has 5'->3' DNA helicase activity and is specifically stimulated by mitochondrial single-stranded DNA-binding protein. J. Biol. Chem. 2003, 278:48627-48632.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 48627-48632
-
-
Korhonen, J.A.1
Gaspari, M.2
Falkenberg, M.3
-
18
-
-
3242739284
-
Reconstitution of a minimal mtDNA replisome in vitro
-
Korhonen J.A., Pham X.H., Pellegrini M., Falkenberg M. Reconstitution of a minimal mtDNA replisome in vitro. EMBO J. 2004, 23:2423-2429.
-
(2004)
EMBO J.
, vol.23
, pp. 2423-2429
-
-
Korhonen, J.A.1
Pham, X.H.2
Pellegrini, M.3
Falkenberg, M.4
-
19
-
-
0028959253
-
Stimulation of Drosophila mitochondrial DNA polymerase by single-stranded DNA-binding protein
-
Williams A.J., Kaguni L.S. Stimulation of Drosophila mitochondrial DNA polymerase by single-stranded DNA-binding protein. J. Biol. Chem. 1995, 270:860-865.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 860-865
-
-
Williams, A.J.1
Kaguni, L.S.2
-
20
-
-
0033591435
-
Functional interactions of mitochondrial DNA polymerase and single-stranded DNA-binding protein. Template-primer DNA binding and initiation and elongation of DNA strand synthesis
-
Farr C.L., Wang Y., Kaguni L.S. Functional interactions of mitochondrial DNA polymerase and single-stranded DNA-binding protein. Template-primer DNA binding and initiation and elongation of DNA strand synthesis. J. Biol. Chem. 1999, 274:14779-14785.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 14779-14785
-
-
Farr, C.L.1
Wang, Y.2
Kaguni, L.S.3
-
21
-
-
0035172433
-
Mitochondrial single-stranded DNA-binding protein is required for mitochondrial DNA replication and development in Drosophila melanogaster
-
Maier D., Farr C.L., Poeck B., Alahari A., Vogel M., Fischer S., Kaguni L.S., Schneuwly S. Mitochondrial single-stranded DNA-binding protein is required for mitochondrial DNA replication and development in Drosophila melanogaster. Mol. Biol. Cell 2001, 12:821-830.
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 821-830
-
-
Maier, D.1
Farr, C.L.2
Poeck, B.3
Alahari, A.4
Vogel, M.5
Fischer, S.6
Kaguni, L.S.7
Schneuwly, S.8
-
22
-
-
0026784158
-
Single-stranded DNA binding protein required for mitochondrial DNA replication in S. cerevisiae is homologous to E. coli SSB
-
Van Dyck E., Foury F., Stillman B., Brill S.J. Single-stranded DNA binding protein required for mitochondrial DNA replication in S. cerevisiae is homologous to E. coli SSB. EMBO J. 1992, 11:3421-3430.
-
(1992)
EMBO J.
, vol.11
, pp. 3421-3430
-
-
Van Dyck, E.1
Foury, F.2
Stillman, B.3
Brill, S.J.4
-
23
-
-
0035984909
-
Regulation of mitochondrial D-loops by transcription factor A and single-stranded DNA-binding protein
-
Takamatsu C., Umeda S., Ohsato T., Ohno T., Abe Y., Fukuoh A., Shinagawa H., Hamasaki N., Kang D. Regulation of mitochondrial D-loops by transcription factor A and single-stranded DNA-binding protein. EMBO Rep. 2002, 3:451-456.
-
(2002)
EMBO Rep.
, vol.3
, pp. 451-456
-
-
Takamatsu, C.1
Umeda, S.2
Ohsato, T.3
Ohno, T.4
Abe, Y.5
Fukuoh, A.6
Shinagawa, H.7
Hamasaki, N.8
Kang, D.9
-
24
-
-
0015241303
-
The presence of DNA molecules with a displacement loop in standard mitochondrial DNA preparations
-
Arnberg A., van Bruggen E.F., Borst P. The presence of DNA molecules with a displacement loop in standard mitochondrial DNA preparations. Biochim. Biophys. Acta 1971, 246:353-357.
-
(1971)
Biochim. Biophys. Acta
, vol.246
, pp. 353-357
-
-
Arnberg, A.1
van Bruggen, E.F.2
Borst, P.3
-
25
-
-
0015117830
-
A novel closed-circular mitochondrial DNA with properties of a replicating intermediate
-
Kasamatsu H., Robberson D.L., Vinograd J. A novel closed-circular mitochondrial DNA with properties of a replicating intermediate. Proc. Natl Acad. Sci. USA 1971, 68:2252-2257.
-
(1971)
Proc. Natl Acad. Sci. USA
, vol.68
, pp. 2252-2257
-
-
Kasamatsu, H.1
Robberson, D.L.2
Vinograd, J.3
-
26
-
-
0019978703
-
Replication of animal mitochondrial DNA
-
Clayton D.A. Replication of animal mitochondrial DNA. Cell 1982, 28:693-705.
-
(1982)
Cell
, vol.28
, pp. 693-705
-
-
Clayton, D.A.1
-
27
-
-
33846407653
-
The AAA+protein ATAD3 has displacement loop binding properties and is involved in mitochondrial nucleoid organization
-
He J., Mao C.C., Reyes A., Sembongi H., Di Re M., Granycome C., Clippingdale A.B., Fearnley I.M., Harbour M., Robinson A.J., Reichelt S., Spelbrink J.N., Walker J.E., Holt I.J. The AAA+protein ATAD3 has displacement loop binding properties and is involved in mitochondrial nucleoid organization. J. Cell Biol. 2007, 176:141-146.
-
(2007)
J. Cell Biol.
, vol.176
, pp. 141-146
-
-
He, J.1
Mao, C.C.2
Reyes, A.3
Sembongi, H.4
Di Re, M.5
Granycome, C.6
Clippingdale, A.B.7
Fearnley, I.M.8
Harbour, M.9
Robinson, A.J.10
Reichelt, S.11
Spelbrink, J.N.12
Walker, J.E.13
Holt, I.J.14
-
28
-
-
73049113711
-
The accessory subunit of mitochondrial DNA polymerase gamma determines the DNA content of mitochondrial nucleoids in human cultured cells
-
Di Re M., Sembongi H., He J., Reyes A., Yasukawa T., Martinsson P., Bailey L.J., Goffart S., Boyd-Kirkup J.D., Wong T.S., Fersht A.R., Spelbrink J.N., Holt I.J. The accessory subunit of mitochondrial DNA polymerase gamma determines the DNA content of mitochondrial nucleoids in human cultured cells. Nucleic Acids Res. 2009, 37:5701-5713.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5701-5713
-
-
Di Re, M.1
Sembongi, H.2
He, J.3
Reyes, A.4
Yasukawa, T.5
Martinsson, P.6
Bailey, L.J.7
Goffart, S.8
Boyd-Kirkup, J.D.9
Wong, T.S.10
Fersht, A.R.11
Spelbrink, J.N.12
Holt, I.J.13
-
29
-
-
0041661881
-
Replication of mitochondrial DNA occurs throughout the mitochondria of cultured human cells
-
Magnusson J., Orth M., Lestienne P., Taanman J.W. Replication of mitochondrial DNA occurs throughout the mitochondria of cultured human cells. Exp. Cell Res. 2003, 289:133-142.
-
(2003)
Exp. Cell Res.
, vol.289
, pp. 133-142
-
-
Magnusson, J.1
Orth, M.2
Lestienne, P.3
Taanman, J.W.4
-
30
-
-
32944481373
-
PDIP38 associates with proteins constituting the mitochondrial DNA nucleoid
-
Cheng X., Kanki T., Fukuoh A., Ohgaki K., Takeya R., Aoki Y., Hamasaki N., Kang D. PDIP38 associates with proteins constituting the mitochondrial DNA nucleoid. J. Biochem. 2005, 138:673-678.
-
(2005)
J. Biochem.
, vol.138
, pp. 673-678
-
-
Cheng, X.1
Kanki, T.2
Fukuoh, A.3
Ohgaki, K.4
Takeya, R.5
Aoki, Y.6
Hamasaki, N.7
Kang, D.8
-
31
-
-
20444428352
-
A bidirectional origin of replication maps to the major noncoding region of human mitochondrial DNA
-
Yasukawa T., Yang M.Y., Jacobs H.T., Holt I.J. A bidirectional origin of replication maps to the major noncoding region of human mitochondrial DNA. Mol. Cell 2005, 18:651-662.
-
(2005)
Mol. Cell
, vol.18
, pp. 651-662
-
-
Yasukawa, T.1
Yang, M.Y.2
Jacobs, H.T.3
Holt, I.J.4
-
32
-
-
62749113469
-
Silencing of PINK1 expression affects mitochondrial DNA and oxidative phosphorylation in dopaminergic cells
-
Gegg M.E., Cooper J.M., Schapira A.H., Taanman J.W. Silencing of PINK1 expression affects mitochondrial DNA and oxidative phosphorylation in dopaminergic cells. PLoS ONE 2009, 4:e4756.
-
(2009)
PLoS ONE
, vol.4
-
-
Gegg, M.E.1
Cooper, J.M.2
Schapira, A.H.3
Taanman, J.W.4
-
33
-
-
0024521381
-
Studies on the inhibition of mitochondrial DNA replication by 3'-azido-3'-deoxythymidine and other dideoxynucleoside analogs which inhibit HIV-1 replication
-
Simpson M.V., Chin C.D., Keilbaugh S.A., Lin T.S., Prusoff W.H. Studies on the inhibition of mitochondrial DNA replication by 3'-azido-3'-deoxythymidine and other dideoxynucleoside analogs which inhibit HIV-1 replication. Biochem. Pharmacol. 1989, 38:1033-1036.
-
(1989)
Biochem. Pharmacol.
, vol.38
, pp. 1033-1036
-
-
Simpson, M.V.1
Chin, C.D.2
Keilbaugh, S.A.3
Lin, T.S.4
Prusoff, W.H.5
-
34
-
-
0018268329
-
Mechanism of mitochondrial DNA replication in mouse L-cells: kinetics of synthesis and turnover of the initiation sequence
-
Bogenhagen D., Clayton D.A. Mechanism of mitochondrial DNA replication in mouse L-cells: kinetics of synthesis and turnover of the initiation sequence. J. Mol. Biol. 1978, 119:49-68.
-
(1978)
J. Mol. Biol.
, vol.119
, pp. 49-68
-
-
Bogenhagen, D.1
Clayton, D.A.2
-
35
-
-
0036566781
-
Release of replication termination controls mitochondrial DNA copy number after depletion with 2', 3'-dideoxycytidine
-
Brown T.A., Clayton D.A. Release of replication termination controls mitochondrial DNA copy number after depletion with 2', 3'-dideoxycytidine. Nucleic Acids Res. 2002, 30:2004-2010.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 2004-2010
-
-
Brown, T.A.1
Clayton, D.A.2
-
36
-
-
33845629364
-
Alterations to the expression level of mitochondrial transcription factor A, TFAM, modify the mode of mitochondrial DNA replication in cultured human cells
-
Pohjoismaki J.L., Wanrooij S., Hyvarinen A.K., Goffart S., Holt I.J., Spelbrink J.N., Jacobs H.T. Alterations to the expression level of mitochondrial transcription factor A, TFAM, modify the mode of mitochondrial DNA replication in cultured human cells. Nucleic Acids Res. 2006, 34:5815-5828.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 5815-5828
-
-
Pohjoismaki, J.L.1
Wanrooij, S.2
Hyvarinen, A.K.3
Goffart, S.4
Holt, I.J.5
Spelbrink, J.N.6
Jacobs, H.T.7
-
37
-
-
34248632009
-
The C-terminal tail of mitochondrial transcription factor a markedly strengthens its general binding to DNA
-
Ohgaki K., Kanki T., Fukuoh A., Kurisaki H., Aoki Y., Ikeuchi M., Kim S.H., Hamasaki N., Kang D. The C-terminal tail of mitochondrial transcription factor a markedly strengthens its general binding to DNA. J. Biochem. (Tokyo) 2007, 141:201-211.
-
(2007)
J. Biochem. (Tokyo)
, vol.141
, pp. 201-211
-
-
Ohgaki, K.1
Kanki, T.2
Fukuoh, A.3
Kurisaki, H.4
Aoki, Y.5
Ikeuchi, M.6
Kim, S.H.7
Hamasaki, N.8
Kang, D.9
-
38
-
-
12344293822
-
Detection of mitochondrial DNA depletion in living human cells using PicoGreen staining
-
Ashley N., Harris D., Poulton J. Detection of mitochondrial DNA depletion in living human cells using PicoGreen staining. Exp. Cell Res. 2005, 303:432-446.
-
(2005)
Exp. Cell Res.
, vol.303
, pp. 432-446
-
-
Ashley, N.1
Harris, D.2
Poulton, J.3
-
39
-
-
0019888719
-
Characterization of a rat liver mitochondrial DNA-protein complex. Replicative intermediates are protected against branch migrational loss
-
Van Tuyle G.C., Pavco P.A. Characterization of a rat liver mitochondrial DNA-protein complex. Replicative intermediates are protected against branch migrational loss. J. Biol. Chem. 1981, 256:12772-12779.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 12772-12779
-
-
Van Tuyle, G.C.1
Pavco, P.A.2
-
40
-
-
39649120348
-
Inherited mitochondrial diseases of DNA replication
-
Copeland W.C. Inherited mitochondrial diseases of DNA replication. Annu. Rev. Med. 2008, 59:131-146.
-
(2008)
Annu. Rev. Med.
, vol.59
, pp. 131-146
-
-
Copeland, W.C.1
-
41
-
-
33847616158
-
Depletion of mtDNA: syndromes and genes
-
Alberio S., Mineri R., Tiranti V., Zeviani M. Depletion of mtDNA: syndromes and genes. Mitochondrion 2007, 7:6-12.
-
(2007)
Mitochondrion
, vol.7
, pp. 6-12
-
-
Alberio, S.1
Mineri, R.2
Tiranti, V.3
Zeviani, M.4
-
42
-
-
35649024143
-
Recessive Twinkle mutations in early onset encephalopathy with mtDNA depletion
-
Hakonen A.H., Isohanni P., Paetau A., Herva R., Suomalainen A., Lonnqvist T. Recessive Twinkle mutations in early onset encephalopathy with mtDNA depletion. Brain 2007, 130:3032-3040.
-
(2007)
Brain
, vol.130
, pp. 3032-3040
-
-
Hakonen, A.H.1
Isohanni, P.2
Paetau, A.3
Herva, R.4
Suomalainen, A.5
Lonnqvist, T.6
-
43
-
-
37849003416
-
Twinkle helicase (PEO1) gene mutation causes mitochondrial DNA depletion
-
Sarzi E., Goffart S., Serre V., Chretien D., Slama A., Munnich A., Spelbrink J.N., Rotig A. Twinkle helicase (PEO1) gene mutation causes mitochondrial DNA depletion. Ann. Neurol. 2007, 62:579-587.
-
(2007)
Ann. Neurol.
, vol.62
, pp. 579-587
-
-
Sarzi, E.1
Goffart, S.2
Serre, V.3
Chretien, D.4
Slama, A.5
Munnich, A.6
Spelbrink, J.N.7
Rotig, A.8
-
44
-
-
0037112343
-
Biased incorporation of ribonucleotides on the mitochondrial L-strand accounts for apparent strand-asymmetric DNA replication
-
Yang M.Y., Bowmaker M., Reyes A., Vergani L., Angeli P., Gringeri E., Jacobs H.T., Holt I.J. Biased incorporation of ribonucleotides on the mitochondrial L-strand accounts for apparent strand-asymmetric DNA replication. Cell 2002, 111:495-505.
-
(2002)
Cell
, vol.111
, pp. 495-505
-
-
Yang, M.Y.1
Bowmaker, M.2
Reyes, A.3
Vergani, L.4
Angeli, P.5
Gringeri, E.6
Jacobs, H.T.7
Holt, I.J.8
|