메뉴 건너뛰기




Volumn 2, Issue 1, 2009, Pages 58-80

Predicting multiple binding modes using a kernel method based on a Vector Space Model Molecular Descriptor

Author keywords

Kernel methods; Molecular Descriptor; Multiple binding modes; QSAR; Vector Space Model; VSM

Indexed keywords

ANILINOPYRAZOLE; CYCLIN DEPENDENT KINASE 2 INHIBITOR; CYCLOPENTENE DERIVATIVE; MITOGEN ACTIVATED PROTEIN KINASE INHIBITOR; UNCLASSIFIED DRUG;

EID: 77953654552     PISSN: 17560756     EISSN: 17560764     Source Type: Journal    
DOI: 10.1504/IJCBDD.2009.027584     Document Type: Article
Times cited : (3)

References (60)
  • 1
    • 34250813174 scopus 로고    scopus 로고
    • One-to four-dimensional kernels for virtual screening and the prediction of physical, chemical, and biological properties
    • Azencott, C. A., Ksikes, A., Swamidass, S. J., Chen, J. H., Ralaivola, L. and Baldi, P. (2007) 'One-to four-dimensional kernels for virtual screening and the prediction of physical, chemical, and biological properties', Journal of Chemical Information and Modeling, Vol. 47, No. 3, pp. 965-974.
    • (2007) Journal of Chemical Information and Modeling , vol.47 , Issue.3 , pp. 965-974
    • Azencott, C.A.1    Ksikes, A.2    Swamidass, S.J.3    Chen, J.H.4    Ralaivola, L.5    Baldi, P.6
  • 2
    • 0028454828 scopus 로고
    • The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure
    • Bohm, H. J. (1994) 'The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure', Journal of Computer-Aided Molecular Design, Vol. 8, No. 3, pp. 243-256.
    • (1994) Journal of Computer-Aided Molecular Design , vol.8 , Issue.3 , pp. 243-256
    • Bohm, H.J.1
  • 3
    • 0037920567 scopus 로고    scopus 로고
    • Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa
    • Bohm, M., Sturzebecher, J. and Klebe, G. (1999) 'Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa', Journal of Medicinal Chemistry, Vol. 42, No. 3, pp. 458-477.
    • (1999) Journal of Medicinal Chemistry , vol.42 , Issue.3 , pp. 458-477
    • Bohm, M.1    Sturzebecher, J.2    Klebe, G.3
  • 4
    • 0025836272 scopus 로고
    • Pneumocystis-carinii dihydrofolate-reductase used to screen potential antipneumocystis drugs
    • Broughton, M. C. and Queener, S. F. (1991) 'Pneumocystis-carinii dihydrofolate-reductase used to screen potential antipneumocystis drugs', Antimicrobial Agents and Chemotherapy, Vol. 35, No. 7, pp. 1348-1355.
    • (1991) Antimicrobial Agents and Chemotherapy , vol.35 , Issue.7 , pp. 1348-1355
    • Broughton, M.C.1    Queener, S.F.2
  • 5
    • 0035960062 scopus 로고    scopus 로고
    • Three-dimensional quantitative structure-activity relationships of cyclo-oxygenase-2 (COX-2) inhibitors: A comparative molecular field analysis
    • Chavatte, P., Yous, S., Marot, C., Baurin, N. and Lesieur, D. (2001) "Three-dimensional quantitative structure-activity relationships of cyclo-oxygenase-2 (COX-2) inhibitors: a comparative molecular field analysis', Journal of Medicinal Chemistry, Vol. 44, No. 20, pp. 3223-3230.
    • (2001) Journal of Medicinal Chemistry , vol.44 , Issue.20 , pp. 3223-3230
    • Chavatte, P.1    Yous, S.2    Marot, C.3    Baurin, N.4    Lesieur, D.5
  • 6
    • 0031626787 scopus 로고    scopus 로고
    • Focus-2D: A new approach to the design of targeted combinatorial chemical libraries
    • Hawaii, pp
    • Cho, S. J., Zheng, W. and Tropsha, A. (1998) 'Focus-2D: a new approach to the design of targeted combinatorial chemical libraries', 3rd Pacific Symposium on Biocomputing, Hawaii, pp. 305-316.
    • (1998) 3rd Pacific Symposium on Biocomputing , pp. 305-316
    • Cho, S.J.1    Zheng, W.2    Tropsha, A.3
  • 7
    • 0023751431 scopus 로고
    • Comparative molecular-field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
    • Cramer, R. D., Patterson, D. E. and Bunce, J. D. (1988) 'Comparative molecular-field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins', Journal of the American Chemical Society, Vol. 110, No. 18, pp. 5959-5967.
    • (1988) Journal of the American Chemical Society , vol.110 , Issue.18 , pp. 5959-5967
    • Cramer, R.D.1    Patterson, D.E.2    Bunce, J.D.3
  • 10
    • 0027183015 scopus 로고
    • 3D-QSAR of angiotensinconverting enzyme and thermolysin inhibitors - a comparison of CoMFA models based on deduced and experimentally determined active-site geometries
    • Depriest, S. A., Mayer, D., Naylor, C. B. and Marshall, G. R. (1993) '3D-QSAR of angiotensinconverting enzyme and thermolysin inhibitors - a comparison of CoMFA models based on deduced and experimentally determined active-site geometries', Journal of the American Chemical Society, Vol. 115, No. 13 pp. 5372-5384.
    • (1993) Journal of the American Chemical Society , vol.115 , Issue.13 , pp. 5372-5384
    • Depriest, S.A.1    Mayer, D.2    Naylor, C.B.3    Marshall, G.R.4
  • 11
    • 0002924226 scopus 로고    scopus 로고
    • Genetic partial least squares in QSAR
    • DeVillers, J, Ed, Academic Press, London, pp
    • Dunn, W. J. and Rogers, D. (1996) 'Genetic partial least squares in QSAR', in DeVillers, J. (Ed.) : Genetic Algorithm in Molecular Modeling, Academic Press, London, pp. 109-130.
    • (1996) Genetic Algorithm in Molecular Modeling , pp. 109-130
    • Dunn, W.J.1    Rogers, D.2
  • 12
    • 0021733924 scopus 로고
    • Multivariate structure-activity relationships between data from a battery of biological tests and an ensemble of structure descriptors: The PLS method
    • Dunn, W. J., Wold, S., Edlund, U., Hellberg, S. and Gasteiger, J. (1984) 'Multivariate structure-activity relationships between data from a battery of biological tests and an ensemble of structure descriptors: the PLS method', Quantitative Structure-Activity Relationships, Vol. 3, pp. 131-137.
    • (1984) Quantitative Structure-Activity Relationships , vol.3 , pp. 131-137
    • Dunn, W.J.1    Wold, S.2    Edlund, U.3    Hellberg, S.4    Gasteiger, J.5
  • 14
    • 0032619434 scopus 로고    scopus 로고
    • Binary Quantitative Structure-Activity Relationship (QSAR) analysis of estrogen receptor ligands
    • Gao, H., Williams, C., Labute, P. and Bajorath, J. (1999) 'Binary Quantitative Structure-Activity Relationship (QSAR) analysis of estrogen receptor ligands', Journal of Chemical Information and Modeling, Vol. 39, No. 1, pp. 164-168.
    • (1999) Journal of Chemical Information and Modeling , vol.39 , Issue.1 , pp. 164-168
    • Gao, H.1    Williams, C.2    Labute, P.3    Bajorath, J.4
  • 15
    • 33750286241 scopus 로고    scopus 로고
    • QSAR - How good is it in practice? Comparison of descriptor sets on an unbiased cross section of corporate data sets
    • Gedeck, P., Rohde, B. and Bartels, C. (2006) 'QSAR - How good is it in practice? Comparison of descriptor sets on an unbiased cross section of corporate data sets', Journal of Chemical Information and Modeling, Vol. 46, No. 5, pp. 1924-1936.
    • (2006) Journal of Chemical Information and Modeling , vol.46 , Issue.5 , pp. 1924-1936
    • Gedeck, P.1    Rohde, B.2    Bartels, C.3
  • 16
    • 0037068492 scopus 로고    scopus 로고
    • DrugScore meets CoMFA: Adaptation of fields for molecular comparison (AFMoC) or how to tailor knowledge-based pair-potentials to a particular protein
    • Gohlke, H. and Klebe, G. (2002) 'DrugScore meets CoMFA: adaptation of fields for molecular comparison (AFMoC) or how to tailor knowledge-based pair-potentials to a particular protein', Journal of Medicinal Chemistry, Vol. 45, No. 19, pp. 4153-4170.
    • (2002) Journal of Medicinal Chemistry , vol.45 , Issue.19 , pp. 4153-4170
    • Gohlke, H.1    Klebe, G.2
  • 17
    • 0034011785 scopus 로고    scopus 로고
    • Validation of protein-based alignment in 3D quantitative structure-activity relationships with CoMFA models
    • Golbraikh, A., Bernard, P. and Chretien, J. R. (2000) 'Validation of protein-based alignment in 3D quantitative structure-activity relationships with CoMFA models', European Journal of Medicinal Chemistry, Vol. 35, No. 1, pp. 123-136.
    • (2000) European Journal of Medicinal Chemistry , vol.35 , Issue.1 , pp. 123-136
    • Golbraikh, A.1    Bernard, P.2    Chretien, J.R.3
  • 18
    • 0001377523 scopus 로고
    • Recent advances in the molecular pharmacology of benzodiazepine receptors and in the structure-activity relationships of their agonists and antagonists
    • Haefely, W., Kyburz, E., Gerecke, M. and Mohler, H. (1985) 'Recent advances in the molecular pharmacology of benzodiazepine receptors and in the structure-activity relationships of their agonists and antagonists', Advances in Drug Research, Vol. 14, pp. 165-322.
    • (1985) Advances in Drug Research , vol.14 , pp. 165-322
    • Haefely, W.1    Kyburz, E.2    Gerecke, M.3    Mohler, H.4
  • 19
    • 34247574138 scopus 로고    scopus 로고
    • Synthesis, biological testing, and binding mode prediction of 6, 9-diarylpurin-8-ones as p38 MAP kinase inhibitors
    • Hauser, D. R. J., Scior, T., Domeyer, D. M., Kammerer, B. and Laufer, S. A. (2007) 'Synthesis, biological testing, and binding mode prediction of 6, 9-diarylpurin-8-ones as p38 MAP kinase inhibitors', Journal of Medicinal Chemistry, Vol. 50, No. 9, pp. 2060-2066.
    • (2007) Journal of Medicinal Chemistry , vol.50 , Issue.9 , pp. 2060-2066
    • Hauser, D.R.J.1    Scior, T.2    Domeyer, D.M.3    Kammerer, B.4    Laufer, S.A.5
  • 21
    • 10244222365 scopus 로고    scopus 로고
    • Comparison of topological descriptors for similarity-based virtual screening using multiple bioactive reference structures
    • Hert, J., Willett, P., Wilton, D. J., Acklin, P., Azzaoui, K., Jacoby, E. and Schuffenhauer, A. (2002) 'Comparison of topological descriptors for similarity-based virtual screening using multiple bioactive reference structures', Organic and Biomolecular Chemistry, Vol. 2, No. 22, pp. 3256-3266.
    • (2002) Organic and Biomolecular Chemistry , vol.2 , Issue.22 , pp. 3256-3266
    • Hert, J.1    Willett, P.2    Wilton, D.J.3    Acklin, P.4    Azzaoui, K.5    Jacoby, E.6    Schuffenhauer, A.7
  • 23
    • 0002714543 scopus 로고    scopus 로고
    • Making large-scale SVM learning practical
    • Schölkopf, B, Burges, C. and Smola, A, Eds, MIT-Press, Cambridge, Mass
    • Joachims, T. (1999) 'Making large-scale SVM learning practical', in Schölkopf, B., Burges, C. and Smola, A. (Eds.) : Advances in Kernel Methods - Support Vector Learning, MIT-Press, Cambridge, Mass.
    • (1999) Advances in Kernel Methods - Support Vector Learning
    • Joachims, T.1
  • 24
    • 0029444383 scopus 로고
    • A genetic algorithm for flexible molecular overlay and pharmacophore elucidation
    • Jones, G., Willett, P. and Glen, R. C. (1995a) 'A genetic algorithm for flexible molecular overlay and pharmacophore elucidation', Journal of Computer-Aided Molecular Design, Vol. 9, No. 6, pp. 532-549.
    • (1995) Journal of Computer-Aided Molecular Design , vol.9 , Issue.6 , pp. 532-549
    • Jones, G.1    Willett, P.2    Glen, R.C.3
  • 25
    • 0028854034 scopus 로고
    • Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation
    • Jones, G., Willett, P. and Glen, R. C. (1995b) 'Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation', Journal of Molecular Biology, Vol. 245, No. 1, pp. 43-53.
    • (1995) Journal of Molecular Biology , vol.245 , Issue.1 , pp. 43-53
    • Jones, G.1    Willett, P.2    Glen, R.C.3
  • 26
    • 0031552362 scopus 로고    scopus 로고
    • Development and validation of a genetic algorithm for flexible docking
    • Jones, G., Willett, P., Glen, R. C., Leach, A. R. and Taylor, R. (1997) 'Development and validation of a genetic algorithm for flexible docking', Journal of Molecular Biology, Vol. 267, No. 3, pp. 727-748.
    • (1997) Journal of Molecular Biology , vol.267 , Issue.3 , pp. 727-748
    • Jones, G.1    Willett, P.2    Glen, R.C.3    Leach, A.R.4    Taylor, R.5
  • 28
    • 34548785534 scopus 로고    scopus 로고
    • Outliers in SAR and QSAR: 2. Is a flexible binding site a possible source of outliers?
    • Kim, K. H. (2007a) 'Outliers in SAR and QSAR: 2. Is a flexible binding site a possible source of outliers?', Journal of Computer-Aided Molecular Design, Vol. 21, No. 8, pp. 421-435.
    • (2007) Journal of Computer-Aided Molecular Design , vol.21 , Issue.8 , pp. 421-435
    • Kim, K.H.1
  • 29
    • 33947195392 scopus 로고    scopus 로고
    • Outliers in SAR and QSAR: Is unusual binding mode a possible source of outliers?
    • Kim, K. H. (2007b) 'Outliers in SAR and QSAR: Is unusual binding mode a possible source of outliers?', Journal of Computer-Aided Molecular Design, Vol. 21, Nos. 1-3, pp. 63-86.
    • (2007) Journal of Computer-Aided Molecular Design , vol.21 , Issue.1-3 , pp. 63-86
    • Kim, K.H.1
  • 31
    • 0033022163 scopus 로고    scopus 로고
    • Comparative molecular similarity index analysis (CoMSIA) to study hydrogen-bonding properties and to score combinatorial libraries
    • Klebe, G. and Abraham, U. (1999) 'Comparative molecular similarity index analysis (CoMSIA) to study hydrogen-bonding properties and to score combinatorial libraries', Journal of Computer-Aided Molecular Design, Vol. 13, No. 1, pp. 1-10.
    • (1999) Journal of Computer-Aided Molecular Design , vol.13 , Issue.1 , pp. 1-10
    • Klebe, G.1    Abraham, U.2
  • 32
    • 0027944195 scopus 로고
    • Molecular similarity indexes in a comparative-analysis (CoMSIA) of drug molecules to correlate and predict their biologicalactivity
    • Klebe, G., Abraham, U. and Mietzner, T. (1994) 'Molecular similarity indexes in a comparative-analysis (CoMSIA) of drug molecules to correlate and predict their biologicalactivity', Journal of Medicinal Chemistry, Vol. 37, No. 24, pp. 4130-4146.
    • (1994) Journal of Medicinal Chemistry , vol.37 , Issue.24 , pp. 4130-4146
    • Klebe, G.1    Abraham, U.2    Mietzner, T.3
  • 33
    • 0032738842 scopus 로고    scopus 로고
    • Evaluation of the FLEXX incremental construction algorithm for protein-ligand docking
    • Kramer, B., Rarey, M. and Lengauer, T. (1999) 'Evaluation of the FLEXX incremental construction algorithm for protein-ligand docking', Proteins, Vol. 37, No. 2, pp. 228-241.
    • (1999) Proteins , vol.37 , Issue.2 , pp. 228-241
    • Kramer, B.1    Rarey, M.2    Lengauer, T.3
  • 35
    • 0344988823 scopus 로고    scopus 로고
    • HQSAR: A new, highly predictive QSAR technique
    • Lowis, D. R. (1997) 'HQSAR: a new, highly predictive QSAR technique', Tripos Technical Notes, Vol. 1, No. 5, pp. 1-15.
    • (1997) Tripos Technical Notes , vol.1 , Issue.5 , pp. 1-15
    • Lowis, D.R.1
  • 36
    • 0029065819 scopus 로고
    • Prediction of receptor properties and binding-affinity of ligands to benzodiazepine/Gaba (A) receptors using artificial neural networks
    • Maddalena, D. J. and Johnston, G. A. R. (1995) 'Prediction of receptor properties and binding-affinity of ligands to benzodiazepine/Gaba (A) receptors using artificial neural networks', Journal of Medicinal Chemistry, Vol. 38, No. 4, pp. 715-724.
    • (1995) Journal of Medicinal Chemistry , vol.38 , Issue.4 , pp. 715-724
    • Maddalena, D.J.1    Johnston, G.A.R.2
  • 37
    • 33750294461 scopus 로고    scopus 로고
    • The pharmacophore kernel for virtual screening with support vector machines
    • Mahe, P., Ralaivola, L., Stoven, V. and Vert, J. P. (2006) 'The pharmacophore kernel for virtual screening with support vector machines', Journal of Chemical Information and Modeling, Vol. 46, No. 5, pp. 2003-2014.
    • (2006) Journal of Chemical Information and Modeling , vol.46 , Issue.5 , pp. 2003-2014
    • Mahe, P.1    Ralaivola, L.2    Stoven, V.3    Vert, J.P.4
  • 38
    • 23844458045 scopus 로고    scopus 로고
    • Graph kernels for molecular structure-activity relationship analysis with support vector machines
    • Mahe, P., Ueda, N., Akutsu, T., Perret, J. L. and Vert, J. P. (2005) 'Graph kernels for molecular structure-activity relationship analysis with support vector machines', Journal of Chemical Information and Modeling, Vol. 45, No. 4, pp. 939-951.
    • (2005) Journal of Chemical Information and Modeling , vol.45 , Issue.4 , pp. 939-951
    • Mahe, P.1    Ueda, N.2    Akutsu, T.3    Perret, J.L.4    Vert, J.P.5
  • 40
    • 23844480138 scopus 로고    scopus 로고
    • Graph kernels for chemical informatics
    • Ralaivola, L., Swamidass, S. J., Saigo, H. and Baldi, P. (2005) 'Graph kernels for chemical informatics', Neural Networks, Vol. 18, No. 8, pp. 1093-1110.
    • (2005) Neural Networks , vol.18 , Issue.8 , pp. 1093-1110
    • Ralaivola, L.1    Swamidass, S.J.2    Saigo, H.3    Baldi, P.4
  • 41
    • 0030599010 scopus 로고    scopus 로고
    • A fast flexible docking method using an incremental construction algorithm
    • Rarey, M., Kramer, B., Lengauer, T. and Klebe, G. (1996) 'A fast flexible docking method using an incremental construction algorithm', Journal of Molecular Biology, Vol. 261, No. 3, pp. 470-489.
    • (1996) Journal of Molecular Biology , vol.261 , Issue.3 , pp. 470-489
    • Rarey, M.1    Kramer, B.2    Lengauer, T.3    Klebe, G.4
  • 43
    • 0028467707 scopus 로고
    • Application of genetic function approximation to quantitative structure activity relationships and quantitative structure property relationships
    • Rogers, D. and Hopfinger, A. J. (1994) 'Application of genetic function approximation to quantitative structure activity relationships and quantitative structure property relationships', Journal of Chemical Information and Computer Sciences, Vol. 34, No. 4, pp. 854-866.
    • (1994) Journal of Chemical Information and Computer Sciences , vol.34 , Issue.4 , pp. 854-866
    • Rogers, D.1    Hopfinger, A.J.2
  • 44
    • 26944503021 scopus 로고    scopus 로고
    • Using extended connectivity fingerprints with Laplacian-modified Bayesian analysis in high-throughput screening follow-up
    • Rogers, D., Brown, R. D. and Hahn, M. (2005) 'Using extended connectivity fingerprints with Laplacian-modified Bayesian analysis in high-throughput screening follow-up', Journal of Biomolecular Screening, Vol. 10, No. 7, pp. 682-686.
    • (2005) Journal of Biomolecular Screening , vol.10 , Issue.7 , pp. 682-686
    • Rogers, D.1    Brown, R.D.2    Hahn, M.3
  • 45
    • 0016572913 scopus 로고
    • A vector space model for automatic indexing
    • Salton, G., Wong, A. and Yang, C. S. (1975) 'A vector space model for automatic indexing', Communications of the ACM, Vol. 18, No. 11, pp. 613-620.
    • (1975) Communications of the ACM , vol.18 , Issue.11 , pp. 613-620
    • Salton, G.1    Wong, A.2    Yang, C.S.3
  • 46
    • 33845762914 scopus 로고    scopus 로고
    • Prediction of multiple binding modes of the CDK2 inhibitors, anilinopyrazoles, using the automated docking programs GOLD, Flex X, and Ligand Fit: An evaluation of performance
    • Sato, H., Shewchuk, L. M. and Tang, J. (2006) 'Prediction of multiple binding modes of the CDK2 inhibitors, anilinopyrazoles, using the automated docking programs GOLD, Flex X, and Ligand Fit: An evaluation of performance', Journal of Chemical Information and Modeling, Vol. 46, No. 6, pp. 2552-2562.
    • (2006) Journal of Chemical Information and Modeling , vol.46 , Issue.6 , pp. 2552-2562
    • Sato, H.1    Shewchuk, L.M.2    Tang, J.3
  • 47
    • 74049103875 scopus 로고    scopus 로고
    • Potential functions for virtual screening and ligand binding calculations: Some theoretical considerations
    • Alvarez, J. and Shoichet, B, Eds, Taylor & Francis, New York, pp
    • Sharp, K. A. (2005) 'Potential functions for virtual screening and ligand binding calculations: Some theoretical considerations', in Alvarez, J. and Shoichet, B. (Eds.) : Virtual Screening in Drug Discovery, Taylor & Francis, New York, pp. 229-248.
    • (2005) Virtual Screening in Drug Discovery , pp. 229-248
    • Sharp, K.A.1
  • 49
    • 0003401675 scopus 로고    scopus 로고
    • A Tutorial on Support Vector Regression
    • NC2-TR-1998-030. University of London, UK
    • Smola, J. and Schölkopf, B. (1998) A Tutorial on Support Vector Regression, NeuroCOLT2 Technical Report NC2-TR-1998-030. University of London, UK.
    • (1998) NeuroCOLT2 Technical Report
    • Smola, J.1    Schölkopf, B.2
  • 51
    • 33745135773 scopus 로고    scopus 로고
    • Recent developments of the Chemistry Development Kit (CDK) - an open-source Java library for chemo-and bioinformatics
    • Steinbeck, C., Hoppe, C., Kuhn, S., Floris, M., Guha, R. and Willighagen, E. L. (2006) 'Recent developments of the Chemistry Development Kit (CDK) - an open-source Java library for chemo-and bioinformatics', Current Pharmaceutical Design, Vol. 12, No. 17, pp. 2111-2120.
    • (2006) Current Pharmaceutical Design , vol.12 , Issue.17 , pp. 2111-2120
    • Steinbeck, C.1    Hoppe, C.2    Kuhn, S.3    Floris, M.4    Guha, R.5    Willighagen, E.L.6
  • 52
    • 0027104237 scopus 로고
    • Synthesis and structure-activity relationships of acetylcholinesterase inhibitors: 1-benzyl-4-(2-phthalimidoethyl) piperidine, and related derivatives
    • Sugimoto, H., Tsuchiya, Y., Sugumi, H., Higurashi, K., Karibe, N., Iimura, Y., Sasaki, A., Araki, S., Yamanishi, Y. and Yamatsu, K. (1992) 'Synthesis and structure-activity relationships of acetylcholinesterase inhibitors: 1-benzyl-4-(2-phthalimidoethyl) piperidine, and related derivatives', Journal of Medicinal Chemistry, Vol. 35, No. 24, pp. 4542-4548.
    • (1992) Journal of Medicinal Chemistry , vol.35 , Issue.24 , pp. 4542-4548
    • Sugimoto, H.1    Tsuchiya, Y.2    Sugumi, H.3    Higurashi, K.4    Karibe, N.5    Iimura, Y.6    Sasaki, A.7    Araki, S.8    Yamanishi, Y.9    Yamatsu, K.10
  • 53
    • 16644388220 scopus 로고    scopus 로고
    • Three-dimensional quantitative structure-activity and structure-selectivity relationships of dihydrofolate reductase inhibitors
    • Sutherland, J. J. and Weaver, D. F. (2004) 'Three-dimensional quantitative structure-activity and structure-selectivity relationships of dihydrofolate reductase inhibitors', Journal of Computer-Aided Molecular Design, Vol. 18, No. 5, pp. 309-331.
    • (2004) Journal of Computer-Aided Molecular Design , vol.18 , Issue.5 , pp. 309-331
    • Sutherland, J.J.1    Weaver, D.F.2
  • 54
    • 6044244849 scopus 로고    scopus 로고
    • A comparison of methods for modeling quantitative structure-activity relationships
    • Sutherland, J. J., O'Brien, L. A. and Weaver, D. F. (2004) 'A comparison of methods for modeling quantitative structure-activity relationships', Journal of Medicinal Chemistry, Vol. 47, No. 22, pp. 5541-5554.
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.22 , pp. 5541-5554
    • Sutherland, J.J.1    O'Brien, L.A.2    Weaver, D.F.3
  • 55
    • 26944486424 scopus 로고    scopus 로고
    • Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity
    • Swamidass, S. J., Chen, J., Bruand, J., Phung, P., Ralaivola, L. and Baldi, P. (2005) 'Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity', Bioinformatics, Vol. 21, Suppl. 1, pp. i359-i368.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1
    • Swamidass, S.J.1    Chen, J.2    Bruand, J.3    Phung, P.4    Ralaivola, L.5    Baldi, P.6
  • 56
    • 0041519342 scopus 로고    scopus 로고
    • Anilinopyrazole as selective CDK2 inhibitors: Design, synthesis, biological evaluation, and x-ray crystallographic analysis
    • Tang, J., Shewchuk, L. M., Sato, H., Hasegawa, M., Washio, Y. and Nishigaki, N. (2003) 'Anilinopyrazole as selective CDK2 inhibitors: design, synthesis, biological evaluation, and x-ray crystallographic analysis', Bioorganic and Medicinal Chemistry Letters, Vol. 13, No. 18, pp. 2985-2988.
    • (2003) Bioorganic and Medicinal Chemistry Letters , vol.13 , Issue.18 , pp. 2985-2988
    • Tang, J.1    Shewchuk, L.M.2    Sato, H.3    Hasegawa, M.4    Washio, Y.5    Nishigaki, N.6
  • 59
    • 0037212102 scopus 로고    scopus 로고
    • Ligand Fit: A novel method for the shape-directed rapid docking of ligands to protein active sites
    • Venkatachalam, C. M., Jiang, X., Oldfield, T. and Waldman, M. (2003) 'Ligand Fit: a novel method for the shape-directed rapid docking of ligands to protein active sites', Journal of Molecular Graphics and Modelling, Vol. 21, No. 4, pp. 289-307.
    • (2003) Journal of Molecular Graphics and Modelling , vol.21 , Issue.4 , pp. 289-307
    • Venkatachalam, C.M.1    Jiang, X.2    Oldfield, T.3    Waldman, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.