-
1
-
-
0037165942
-
Combinatorial synthesis of genetic networks
-
Guet CC, Elowitz MB, Hsing W, Leibler S. Combinatorial synthesis of genetic networks. Science. 2002;296(5572):1466-70.
-
(2002)
Science
, vol.296
, Issue.5572
, pp. 1466-1470
-
-
Guet, C.C.1
Elowitz, M.B.2
Hsing, W.3
Leibler, S.4
-
3
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz MB, Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature. 2000;403(6767):335-8.
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
4
-
-
0028945986
-
FimH adhesin of type 1 pili is assem- bled into a fibrillar tip structure in the Enterobacteriaceae
-
Jones CH, Pinkner JS, Roth R, et al. FimH adhesin of type 1 pili is assem- bled into a fibrillar tip structure in the Enterobacteriaceae. Proc Natl Acad Sci U S A. 1995;92(6):2081-5.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, Issue.6
, pp. 2081-2085
-
-
Jones, C.H.1
Pinkner, J.S.2
Roth, R.3
-
5
-
-
0036428752
-
Exploring the 3D molecular architecture of Escherichia coli Type 1 pili
-
Hahn E, Wild P, Hermanns U, et al. Exploring the 3D molecular architecture of Escherichia coli Type 1 pili. Journal of Molecular Biology. 2002;323(5):845-57.
-
(2002)
Journal of Molecular Biology
, vol.323
, Issue.5
, pp. 845-857
-
-
Hahn, E.1
Wild, P.2
Hermanns, U.3
-
6
-
-
45549098614
-
FimH forms catch bonds that are enhanced by mechanical force due to allosteric regulation
-
Yakovenko O, Sharma S, Forero M, et al. FimH forms catch bonds that are enhanced by mechanical force due to allosteric regulation. J Biol Chem. 2008;283(17):11596-605.
-
(2008)
J Biol Chem
, vol.283
, Issue.17
, pp. 11596-11605
-
-
Yakovenko, O.1
Sharma, S.2
Forero, M.3
-
7
-
-
33646088314
-
Catch-bond model derived from allostery explains force-activated bacterial adhesion
-
Thomas W, Forero M, Yakovenko O, et al. Catch-bond model derived from allostery explains force-activated bacterial adhesion. Biophys J. 2006;90(3):753-64.
-
(2006)
Biophys J
, vol.90
, Issue.3
, pp. 753-764
-
-
Thomas, W.1
Forero, M.2
Yakovenko, O.3
-
8
-
-
0031977366
-
Isolation of an Escherichia coli K-12 Mutant Strain Able To Form Biofilms on Inert Surfaces: Involvement of a New ompR Allele That Increases Curli Expression
-
Vidal O, Longin R, Prigent-Combaret C, Dorel C, Hooreman M, Lejeune P. Isolation of an Escherichia coli K-12 Mutant Strain Able To Form Biofilms on Inert Surfaces: Involvement of a New ompR Allele That Increases Curli Expression. J Bacteriol. 1998;180(9):2442-9.
-
(1998)
J Bacteriol
, vol.180
, Issue.9
, pp. 2442-2449
-
-
Vidal, O.1
Longin, R.2
Prigent-Combaret, C.3
Dorel, C.4
Hooreman, M.5
Lejeune, P.6
-
9
-
-
0030834844
-
Transduction of envelope stress in Escherichia coli by the Cpx two- component system
-
Raivio TL, Silhavy TJ. Transduction of envelope stress in Escherichia coli by the Cpx two- component system. J Bacteriol. 1997;179(24):7724-33.
-
(1997)
J Bacteriol
, vol.179
, Issue.24
, pp. 7724-7733
-
-
Raivio, T.L.1
Silhavy, T.J.2
-
10
-
-
0037133315
-
Surface sensing and adhesion of Escherichia coli con- trolled by the Cpx-signaling pathway
-
Otto K, Silhavy TJ. Surface sensing and adhesion of Escherichia coli con- trolled by the Cpx-signaling pathway. PNAS. 2002;99(4):2287-92.
-
(2002)
PNAS
, vol.99
, Issue.4
, pp. 2287-2292
-
-
Otto, K.1
Silhavy, T.J.2
-
11
-
-
0000737074
-
Induction of gene expression in Escherichia coli after pilus-mediated adherence
-
Zhang JP, Normark S. Induction of gene expression in Escherichia coli after pilus-mediated adherence. Science. 1996;273(5279):1234-6.
-
(1996)
Science
, vol.273
, Issue.5279
, pp. 1234-1236
-
-
Zhang, J.P.1
Normark, S.2
-
12
-
-
12844264191
-
Down-regulation of the kps region 1 capsular assembly operon following attachment of Escherichia coli Type 1 fimbriae to D-mannose receptors
-
Schwan WR, Beck MT, Hultgren SJ, Pinkner J, Woolever NL, Larson T. Down-regulation of the kps region 1 capsular assembly operon following attachment of Escherichia coli Type 1 fimbriae to D-mannose receptors. Infect Immun. 2005;73(2):1226-31.
-
(2005)
Infect Immun
, vol.73
, Issue.2
, pp. 1226-1231
-
-
Schwan, W.R.1
Beck, M.T.2
Hultgren, S.J.3
Pinkner, J.4
Woolever, N.L.5
Larson, T.6
-
13
-
-
0031832737
-
Heterobinary Adhesins Based on the Escherichia coli FimH Fimbrial Protein
-
Schembri MA, Klemm P. Heterobinary Adhesins Based on the Escherichia coli FimH Fimbrial Protein. Appl Environ Microbiol. 1998;64(5):1628-33.
-
(1998)
Appl Environ Microbiol
, vol.64
, Issue.5
, pp. 1628-1633
-
-
Schembri, M.A.1
Klemm, P.2
-
14
-
-
0029900202
-
Linker insertion anal- ysis of the FimH adhesin of type 1 fimbriae in an Escherichia coli fimH-null background
-
Schembri MA, Pallesen L, Connell HL HD, Klemm P. Linker insertion anal- ysis of the FimH adhesin of type 1 fimbriae in an Escherichia coli fimH-null background. FEMS Microbiology Letters. 1996;137(2-3):257-63.
-
(1996)
FEMS Microbiology Letters
, vol.137
, Issue.2-3
, pp. 257-263
-
-
Schembri, M.A.1
Pallesen, L.2
Connell, H.L.H.D.3
Klemm, P.4
-
15
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2-[delta][delta]CT method
-
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2-[delta][delta]CT method. Methods. 2001;25(4):402-8.
-
(2001)
Methods
, vol.25
, Issue.4
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
16
-
-
0033551911
-
X-ray structure of the FimC- FimH chaperone-adhesin complex from uropathogenic Escherichia coli
-
Choudhury D, Thompson A, Stojanoff V, et al. X-ray structure of the FimC- FimH chaperone-adhesin complex from uropathogenic Escherichia coli. Science. 1999;285(5430):1061-6.
-
(1999)
Science
, vol.285
, Issue.5430
, pp. 1061-1066
-
-
Choudhury, D.1
Thompson, A.2
Stojanoff, V.3
-
17
-
-
0036094156
-
Structural basis of tropism of Escherichia coli to the bladder during urinary tract infection
-
Hung CS, Bouckaert J, Hung D, et al. Structural basis of tropism of Escherichia coli to the bladder during urinary tract infection. Mol Microbiol. 2002;44(4):903-15.
-
(2002)
Mol Microbiol
, vol.44
, Issue.4
, pp. 903-915
-
-
Hung, C.S.1
Bouckaert, J.2
Hung, D.3
-
18
-
-
0035650698
-
2+-chelating peptides selected from a fimbria-displayed random peptide library
-
2+-chelating peptides selected from a fimbria-displayed random peptide library. Appl Environ Microbiol. 2001;67(12):5467-73.
-
(2001)
Appl Environ Microbiol
, vol.67
, Issue.12
, pp. 5467-5473
-
-
Kjargaard, K.1
Schembri, M.A.2
Klemm, P.3
-
19
-
-
0028863961
-
Chimeric FimH adhe- sin of type 1 fimbriae: A bacterial surface display system for heterologous sequences
-
Pallesen L, Poulsen LK, Christiansen G, Klemm P. Chimeric FimH adhe- sin of type 1 fimbriae: a bacterial surface display system for heterologous sequences. Microbiology. 1995;141(11):2839-48.
-
(1995)
Microbiology
, vol.141
, Issue.11
, pp. 2839-2848
-
-
Pallesen, L.1
Poulsen, L.K.2
Christiansen, G.3
Klemm, P.4
-
20
-
-
30644465547
-
The comprehensive updated regulatory network of Escherichia coli K-12
-
Salgado H, Santos-Zavaleta A, Gama-Castro S, et al. The comprehensive updated regulatory network of Escherichia coli K-12. BMC Bioinformatics. 2006;7(1):5.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.1
, pp. 5
-
-
Salgado, H.1
Santos-Zavaleta, A.2
Gama-Castro, S.3
-
21
-
-
13444262374
-
EcoCyc: A comprehensive database resource for Escherichia coli
-
(Data- base issue)
-
Keseler IM, Collado-Vides J, Gama-Castro S, et al. EcoCyc: a comprehensive database resource for Escherichia coli. Nucleic Acids Res. 2005;33(Data- base issue):D334-7.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Keseler, I.M.1
Collado-Vides, J.2
Gama-Castro, S.3
-
22
-
-
0345863934
-
The CyberCell Database (CCDB): A comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
-
(Database issue)
-
Sundararaj S, Guo A, Habibi-Nazhad B, et al. The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Res. 2004;32(Database issue):D293-5.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Sundararaj, S.1
Guo, A.2
Habibi-Nazhad, B.3
-
23
-
-
0037384574
-
Global gene expression in Esch- erichia coli biofilms
-
Schembri MA, Kjaergaard K, Klemm P. Global gene expression in Esch- erichia coli biofilms. Mol Microbiol. 2003;48(1):253-67.
-
(2003)
Mol Microbiol
, vol.48
, Issue.1
, pp. 253-267
-
-
Schembri, M.A.1
Kjaergaard, K.2
Klemm, P.3
-
24
-
-
10744232444
-
Global impact of mature bio- film lifestyle on Escherichia coli K-12 gene expression
-
Beloin C, Valle J, Latour-Lambert P, et al. Global impact of mature bio- film lifestyle on Escherichia coli K-12 gene expression. Mol Microbiol. 2004;51(3):659-74.
-
(2004)
Mol Microbiol
, vol.51
, Issue.3
, pp. 659-674
-
-
Beloin, C.1
Valle, J.2
Latour-Lambert, P.3
-
25
-
-
2342442328
-
Gene expression in Escherichia coli biofilms
-
Ren D, Bedzyk LA, Thomas SM, Ye RW, Wood TK. Gene expression in Escherichia coli biofilms. Applied Microbiology and Biotechnology. 2004;64(4):515-24.
-
(2004)
Applied Microbiology and Biotechnology
, vol.64
, Issue.4
, pp. 515-524
-
-
Ren, D.1
Bedzyk, L.A.2
Thomas, S.M.3
Ye, R.W.4
Wood, T.K.5
-
26
-
-
33747099865
-
Global analysis of candidate genes impor- tant for fitness in a competitive biofilm using DNA-array-based transposon mapping
-
Junker LM, Peters JE, Hay AG. Global analysis of candidate genes impor- tant for fitness in a competitive biofilm using DNA-array-based transposon mapping. Microbiology. 2006;152(8):2233-45.
-
(2006)
Microbiology
, vol.152
, Issue.8
, pp. 2233-2245
-
-
Junker, L.M.1
Peters, J.E.2
Hay, A.G.3
-
27
-
-
33846805492
-
Global gene expression profiling of asymptomatic bacteriuria Escherichia coli during biofilm growth in human urine
-
Hancock V, Klemm P. Global gene expression profiling of asymptomatic bacteriuria Escherichia coli during biofilm growth in human urine. Infect Immun. 2007;75(2):966-76.
-
(2007)
Infect Immun
, vol.75
, Issue.2
, pp. 966-976
-
-
Hancock, V.1
Klemm, P.2
-
28
-
-
33846104333
-
Temporal gene-expression in Escherichia coli K-12 biofilms
-
Domka J, Lee J, Bansal T, Wood TK. Temporal gene-expression in Escherichia coli K-12 biofilms. Environmental Microbiology. 2007;9(2):332-46.
-
(2007)
Environmental Microbiology
, vol.9
, Issue.2
, pp. 332-346
-
-
Domka, J.1
Lee, J.2
Bansal, T.3
Wood, T.K.4
-
29
-
-
0036407233
-
Biofilms as complex differentiated communities
-
Stoodley P, Sauer K, Davies DG, Costerton JW. Biofilms as complex differentiated communities. Annual Review of Microbiology. 2002; 56(1):187-209.
-
(2002)
Annual Review of Microbiology
, vol.56
, Issue.1
, pp. 187-209
-
-
Stoodley, P.1
Sauer, K.2
Davies, D.G.3
Costerton, J.W.4
-
30
-
-
33744729365
-
A complex transcription network controls the early stages of biofilm development by Escherichia coli
-
Prüß BM, Besemann C, Denton A, Wolfe AJ. A complex transcription network controls the early stages of biofilm development by Escherichia coli. J Bacteriol. 2006;188(11):3731-9.
-
(2006)
J Bacteriol
, vol.188
, Issue.11
, pp. 3731-3739
-
-
Prüß, B.M.1
Besemann, C.2
Denton, A.3
Wolfe, A.J.4
-
31
-
-
11444265365
-
Finding gene-expression patterns in bacterial biofilms
-
Beloin C, Ghigo JM. Finding gene-expression patterns in bacterial biofilms. Trends in Microbiology. 2005;13(1):16-9.
-
(2005)
Trends In Microbiology
, vol.13
, Issue.1
, pp. 16-19
-
-
Beloin, C.1
Ghigo, J.M.2
-
32
-
-
0033782143
-
Surface-induced and biofilm-induced changes in gene expression
-
Kuchma SL, O'Toole GA. Surface-induced and biofilm-induced changes in gene expression. Curr Opin Biotechnol. 2000;11(5):429-33.
-
(2000)
Curr Opin Biotechnol
, vol.11
, Issue.5
, pp. 429-433
-
-
Kuchma, S.L.1
O'Toole, G.A.2
-
33
-
-
15744396567
-
Lessons from DNA microarray analysis: The gene expression profile of biofilms
-
Lazazzera BA. Lessons from DNA microarray analysis: the gene expression profile of biofilms. Current Opinion in Microbiology. 2005;8(2):222-7.
-
(2005)
Current Opinion In Microbiology
, vol.8
, Issue.2
, pp. 222-227
-
-
Lazazzera, B.A.1
-
34
-
-
58149250473
-
Insights on Escherichia coli biofilm formation and inhibition from whole-transcriptome profiling
-
Wood TK. Insights on Escherichia coli biofilm formation and inhibition from whole-transcriptome profiling. Environmental Microbiology. 2009; 11(1):1-15.
-
(2009)
Environmental Microbiology
, vol.11
, Issue.1
, pp. 1-15
-
-
Wood, T.K.1
-
35
-
-
36248981481
-
Multimetal resistance and tolerance in microbial biofilms
-
Harrison JJ, Ceri H, Turner RJ. Multimetal resistance and tolerance in microbial biofilms. Nat Rev Micro. 2007;5(12):928-38.
-
(2007)
Nat Rev Micro
, vol.5
, Issue.12
, pp. 928-938
-
-
Harrison, J.J.1
Ceri, H.2
Turner, R.J.3
-
36
-
-
34247850885
-
YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity
-
Zhang XS, Garcia-Contreras R, Wood TK. YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity. J Bacteriol. 2007;189(8):3051-62.
-
(2007)
J Bacteriol
, vol.189
, Issue.8
, pp. 3051-3062
-
-
Zhang, X.S.1
Garcia-Contreras, R.2
Wood, T.K.3
-
37
-
-
22144434455
-
Differential gene expression for investigation of Escherichia coli biofilm inhibition by plant extract ursolic acid
-
Ren D, Zuo R, Gonzalez Barrios AF, et al. Differential gene expression for investigation of Escherichia coli biofilm inhibition by plant extract ursolic acid. Appl Environ Microbiol. 2005;71(7):4022-34.
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.7
, pp. 4022-4034
-
-
Ren, D.1
Zuo, R.2
Gonzalez Barrios, A.F.3
-
38
-
-
0032870733
-
Abiotic surface sensing and biofilm-dependent regulation of gene expression in Escherichia coli
-
Prigent-Combaret C, Vidal O, Dorel C, Lejeune P. Abiotic surface sensing and biofilm-dependent regulation of gene expression in Escherichia coli. J Bacteriol. 1999;181(19):5993-6002.
-
(1999)
J Bacteriol
, vol.181
, Issue.19
, pp. 5993-6002
-
-
Prigent-Combaret, C.1
Vidal, O.2
Dorel, C.3
Lejeune, P.4
-
39
-
-
59149097344
-
Mechanically activated integrin switch controls {alpha}5{beta}1 function
-
Friedland JC, Lee MH, Boettiger D. Mechanically activated integrin switch controls {alpha}5{beta}1 function. Science. 2009;323(5914):642-4.
-
(2009)
Science
, vol.323
, Issue.5914
, pp. 642-644
-
-
Friedland, J.C.1
Lee, M.H.2
Boettiger, D.3
-
40
-
-
67649598285
-
Demonstration of catch bonds between an integrin and its ligand
-
Kong F, Garcia AJ, Mould AP, Humphries MJ, Zhu C. Demonstration of catch bonds between an integrin and its ligand. J Cell Biol. 2009; 185(7):1275-84.
-
(2009)
J Cell Biol
, vol.185
, Issue.7
, pp. 1275-1284
-
-
Kong, F.1
Garcia, A.J.2
Mould, A.P.3
Humphries, M.J.4
Zhu, C.5
|