Gene expression in Escherichia coli biofilms

Applied Microbiology and Biotechnology

Volumn 64, Issue 4, 2004, Pages 515-524

  Ren, D ^a,c   Bedzyk, L A ^b   Thomas, S M ^b   Ye, R W ^b   Wood, T K ^a  

^a UNIVERSITY OF CONNECTICUT   (United States)

^b DUPONT COMPANY   (United States)

^c Cornell University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION;

ARTICLE; BACTERIAL STRAIN; BIOFILM; CELL SUSPENSION; CONTINUOUS FLOW REACTOR; DNA MICROARRAY; ESCHERICHIA COLI; FIMBRIA; GENE EXPRESSION PROFILING; GENE FUNCTION; GENETIC ASSOCIATION; NONHUMAN; RNA GEL BLOT ANALYSIS;

BIOFILMS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; FIMBRIAE, BACTERIAL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; HEAT-SHOCK PROTEINS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

ESCHERICHIA COLI;

EID: 2342442328     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-003-1517-y     Document Type: Article

References (49)

1. Adams JL, McLean RJC (1999) Impact of rpoS deletion on Escherichia coli biofilms. Appl Environ Microbiol 65:4285-4287
2. Bassler BL (1999) How bacteria talk to each other: regulation of gene expression by quorum sensing. Curr Opin Microbiol 2:582-587
3. Davies DG, Parsek MR, Pearson JP, Iglewski BH, Costerton JW, Greenberg EP (1998) The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science 280:295-298
4. DeLisa MP, Wu C-F, Wang L, Valdes JJ, Bentley WE (2001) DNA microarray-based identification of genes controlled by auto-inducer 2-stimulated quorum sensing in Escherichia coli. J Bacteriol 183:5239-5247
5. Elvers KT, Lappin-Scott HM (2000) Biofilms and biofouling. Academic Press, San Diego
6. Fawcett P, Eichenberger P, Losick R, Youngman P (2000) The transcriptional profile of early to middle sporulation in Bacillus subtilis. Proc Natl Acad Sci USA 97:8063-8068
7. Ghigo J-M (2001) Natural conjugative plasmids induce bacterial biofilm development. Nature 412:442-445
8. Hamon MA, Lazazzera BA (2001) The sporulation transcription factor Spo0A is required for biofilm development in Bacillus subtilis. Mol Microbiol 42:1199-1209
9. Helmann JD, Wu MFW, Kobel PA, Gamo F-J, Wilson M, Morshedi MM, Navre M, Paddon C (2001) Global transcriptional response of Bacillus subtilis to heat shock. J Bacteriol 183:7318-7328
10. Heydorn A, Ersboll B, Kato J, Hentzer M, Parsek MR, Tolker-Nielsen T, Givskov M, Molin S (2002) Statistical analysis of Pseudomonas aeruginosa biofilm development: impact of mutations in genes involved in twitching motility, cell-to-cell signaling, and stationary-phase sigma factor expression. Appl Environ Microbiol 68:2008-2017
11. Hoffman JA, Badger JL, Zhang Y, Kim KS (2001) Escherichia coli K1 purA and sorC are preferentially expressed upon association with human brain microvascular endothelial cells. Microb Pathog 31:69-79
12. Ishihama A (1997) Adaptation of gene expression in stationary phase bacteria. Curr Opin Genet Dev 7:582-588
13. Jackson DW, Suzuki K, Oadford L, Simecka JW, Hart ME, Romeo T (2002) Biofilm formation and dispersal under the influence of the global regulator CsrA of Escherichia coli. J Bacteriol 184:290-301
14. Jayaraman A, Earthman JC, Wood TK (1997) Corrosion inhibition by aerobic biofilms on SAE1018 steel. Appl Microbiol Biotechnol 47:62-68
15. Kievit TRD, Gillis R, Marx S, Brown C, Iglewski BH (2001) Quorum-sensing genes in Pseudomonas aeruginosa biofilms: their role and expression patterns. Appl Environ Microbiol 67:1865-1873
16. Kitagawa M, Matsumura Y, Tsuchido T (2000) Small heat shock proteins, IbpA and IbpB, are involved in heat and superoxide stresses in Escherichia coli. FEMS Microbiol Lett 184:165-171
17. Kjaergaard K, Schembri MA, Ramos C, Molin S, Klemm P (2000) Antigen 43 facilitates formation of multispecies biofilm. Environ Microbiol 2:695-702
18. Kolter R, Losick R (1998) One for all and all for one. Science 280:226-227
19. Kuchma SL, O'Toole GA (2000). Surface-induced and biofilm-induced changes in gene expression. Curr Opin Biotechnol 11:429-433
20. Lagares A, Hozbor DF, Niehaus K, Otero AJLP, Lorenzen J, Arnold W, Puhler A (2001) Genetic characterization of a Sinorhizobium meliloti chromosomal region involved in lipopolysaccharide biosynthesis. J Bacteriol 183:1248-1258
21. Lodish H, Berk A, Zipursky SL, Matsudaira P, Baltimore D, Darnell J (1999) Molecular cell biology. Freeman, New York
22. Loewen PC, Hu B, Strutinsky J, Sparling R (1998) Regulation in the rpoS regulon of Escherichia coli. Can J Microbiol 44:707-717
23. Michán C, Manchado M, Peuyo C (2002) SoxRS down-regulation of rob transcription. J Bacteriol 184:4733-4738
24. Moat AG, Foster JW (1995) Microbial physiology. Wiley-Liss, New York
25. Mourino M, Madrid C, Balsalobre C, Prenafeta A, Munoa F, Blanco J, Blanco M, Blanco JE, Juarez A (1996) The Hha protein as a modulator of expression of virulence factors in Escherichia coli. Infect Immun 64:2881-2884
26. Nickel JC, Ruseska I, Wright JB, Costerton JW (1985) Tobramycin resistance of Pseudomonas aeruginosa cells growing as a biofilm on urinary catheter material. Antimicrob Agents Chemother 27:619-624
27. Oosthuizen MC, Steyn B, Lindsay D, Brözel VS, von Holy A (2001) Novel method for the proteomic investigation of a dairy-associated Bacillus cereus biofilm. FEMS Microbiol Lett 194:47-51
28. Oosthuizen MC, Steyn B, Theron J, Cosette P, Lindsay D, von Holy A, Brözel VS (2002) Proteomic analysis reveals differential protein expression by Bacillus cereus during biofilm formation. Appl Environ Microbiol 68:2770-2780
29. Örnek D, Jayaraman A, Syrett BC, Hsu CH, Mansfeld F, Wood TK (2002) Pitting corrosion inhibition of aluminum 2024 by Bacillus biofilms secreting polyaspartate or γ-polyglutamate. Appl Microbiol Biotechnol 58:651-657
30. O'Toole GA, Kolter R (1998) Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development. Mol Microbiol 30:295-304
31. Potera C (1999) Forging a link between biofilms and disease. Science 19:1837-1838
32. Pratt LA, Kolter R (1998) Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili. Mol Microbiol 30:285-293
33. Prigent-Combaret C, Vidal O, Dorel C, Lejeune P (1999) Abiotic surface sensing and biofilm-dependent regulation of gene expression in Escherichia coli. J Bacteriol 181:5993-6002
34. Purevdorj B, Costerton JW, Stoodley P (2002) Influence of hydrodynamics and cell signaling on the structure and behavior of Pseudomonas aeruginosa biofilms. Appl Environ Microbiol 68:4457-4464
35. Reisner A, Haagensen JAJ, Schembri MA, Zechner EL, Molin S (2003) Development and maturation of Escherichia coli K-12 biofilms. Mol Microbiol 48:933-946
36. Ren D, Bedzyk LA Setlow P, Thomas SM, Ye RW, Wood TK (2004) Gene expression in Bacillus subtilis surface. Biofilms with and without sporulation and the importance of yveR for biofilm maintenance. Biotechnol Bioeng (in press)
37. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning, a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
38. Sauer K, Camper AK (2001) Characterization of phenotypic changes in Pseudomonas putida in response to surface-associated growth. J Bacteriol 183:6579-6589
39. Schembri MA, Kjaergaard K, Klemm P (2003) Global gene expression in Escherichia coli biofilms. Mol Microbiol 48:253-267
40. Sperandio V, Torres AG, Giron JA, Kaper JB (2001) Quorum sensing is a global regulatory mechanism in enterohemorrhagic Escherichia coli O157:H7. J Bacteriol 183:5187-5197
41. Stanley NR, Britton RA, Grossman AD, Lazazzera BA (2003) Identification of catabolite repression as a physiological regulator of biofilm formation by Bacillus subtilis by use of DNA microarrays. J Bacteriol 185:1951-1957
42. Steyn B, Oosthuizen MC, MacDonald R, Theron J, Brözel VS (2001) The use of glass wool as an attachment surface for studying phenotypic changes in Pseudomonas aeruginosa biofilms by two-dimensional gel electrophoresis. Proteomics 1:871-879
43. Wada A, Yamazaki Y, Fujita N, Ishihama A (1990) Structure and probable genetic location of a "ribosome modulation factor" associated with 100S ribosomes in stationary-phase. Proc Natl Acad Sci USA 87:2657-2661
44. Wei Y, Lee J-M, Richmond C, Blattner FR, Rafalski JA, Larossa RA (2001) High-density microarray-mediated gene expression profiling of Escherichia coli. J Bacteriol 183:545-556
45. Whiteley M, Bangera MG, Bumgarner RE, Parsek MR, Teltzel GM, Lory S, Greenberg EP (2001) Gene expression in Pseudomonas aeruginosa biofilms. Nature 413:860-864
46. Wilson M, DeRisi J, Kristensen H-H, Imboden P, Rane S, Brown PO, Schoolnik GK (1999) Exploring drug-induced alterations in gene expression in Mycobacterium tuberculosis by microarray hybridization. Proc Natl Acad Sci USA 96:12833-12838
47. Yanisch-Perron C, Viera J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119
48. Ye RW, Tao W, Bedzyk L, Young T, Chen M, Li L (2000) Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions. J Bacteriol 182:4458-4465
49. Zheng M, Wang X, Templeton LJ, Smulski DR, LaRossa RA, Storz G (2001) DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide. J Bacteriol 183:4562-4570