-
2
-
-
0035279936
-
Towards an understanding of complex protein networks
-
Tucker C.L., Gera J.F., Uetz P. Towards an understanding of complex protein networks. Trends Cell Biology 2001, 11:102-126.
-
(2001)
Trends Cell Biology
, vol.11
, pp. 102-126
-
-
Tucker, C.L.1
Gera, J.F.2
Uetz, P.3
-
3
-
-
0036496114
-
Protein recognition by cell surface receptors: physiological receptors versus virus interactions
-
Wang J. Protein recognition by cell surface receptors: physiological receptors versus virus interactions. Trends in Biochemical Sciences 2002, 27:122-126.
-
(2002)
Trends in Biochemical Sciences
, vol.27
, pp. 122-126
-
-
Wang, J.1
-
4
-
-
19544369864
-
An evaluation based classifier for prediction of protein interface without using protein structures
-
Reš I., Mihalek I., Lichtarge O. An evaluation based classifier for prediction of protein interface without using protein structures. Bioinformatics 2005, 21:2496-2501.
-
(2005)
Bioinformatics
, vol.21
, pp. 2496-2501
-
-
Reš, I.1
Mihalek, I.2
Lichtarge, O.3
-
5
-
-
0037161731
-
Comparative assessment of large scale data sets of protein-protein interactions
-
von Mering C., Krause R., Snel B., Cornell M., Oliver G.S., Fields S., et al. Comparative assessment of large scale data sets of protein-protein interactions. Nature 2002, 417:399-403.
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, G.S.5
Fields, S.6
-
6
-
-
0036580169
-
Protein interactions: two methods for assessment of the reliability of high-throughput observation
-
Deane C.M., Salwinski L., Xenarios I., Eisenberg D. Protein interactions: two methods for assessment of the reliability of high-throughput observation. Molecular and Cellular Proteomics 2002, 1:349-356.
-
(2002)
Molecular and Cellular Proteomics
, vol.1
, pp. 349-356
-
-
Deane, C.M.1
Salwinski, L.2
Xenarios, I.3
Eisenberg, D.4
-
7
-
-
0036805329
-
Bridging structural biology and genomics: assessing protein interaction data with known complexes
-
Edwards A.M., Kus B., Jansen R., Greebaum D., Greenblatt J., Derstein M. Bridging structural biology and genomics: assessing protein interaction data with known complexes. Trends in Genetics 2002, 18:529-536.
-
(2002)
Trends in Genetics
, vol.18
, pp. 529-536
-
-
Edwards, A.M.1
Kus, B.2
Jansen, R.3
Greebaum, D.4
Greenblatt, J.5
Derstein, M.6
-
8
-
-
0242500972
-
Construction of reliable protein-protein interaction networks with a new interaction generality measure
-
Saito R., Suzuki H., Hayashizaki Y. Construction of reliable protein-protein interaction networks with a new interaction generality measure. Bioinformatics 2003, 19:756-763.
-
(2003)
Bioinformatics
, vol.19
, pp. 756-763
-
-
Saito, R.1
Suzuki, H.2
Hayashizaki, Y.3
-
9
-
-
33646018046
-
Evaluation of different biological data and computational classification methods for use in protein interaction prediction
-
Qi Y., Joseph Z.B., Seetharaman J.K. Evaluation of different biological data and computational classification methods for use in protein interaction prediction. PROTEINS: Structure, Function, and Bioinformatics 2006, 63:490-500.
-
(2006)
PROTEINS: Structure, Function, and Bioinformatics
, vol.63
, pp. 490-500
-
-
Qi, Y.1
Joseph, Z.B.2
Seetharaman, J.K.3
-
10
-
-
0036601150
-
Computational methods for the prediction of protein interaction
-
Valencia A., Pazos F. Computational methods for the prediction of protein interaction. Current Opinion in Structural Biology 2002, 12:368-373.
-
(2002)
Current Opinion in Structural Biology
, vol.12
, pp. 368-373
-
-
Valencia, A.1
Pazos, F.2
-
11
-
-
0042889111
-
Identification of functional links between genes using phylogenetic profiles
-
Wu J., Kasif S., DeLisi C. Identification of functional links between genes using phylogenetic profiles. Bioinformatics 2003, 19:1524-1530.
-
(2003)
Bioinformatics
, vol.19
, pp. 1524-1530
-
-
Wu, J.1
Kasif, S.2
DeLisi, C.3
-
12
-
-
24044546509
-
Refined phylogenetic profiles method for predicting protein-protein interactions
-
Sun J., Xu J., Liu Z., Liu Q., Zhao A., Shi T., et al. Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinformatics 2005, 21:3409-3415.
-
(2005)
Bioinformatics
, vol.21
, pp. 3409-3415
-
-
Sun, J.1
Xu, J.2
Liu, Z.3
Liu, Q.4
Zhao, A.5
Shi, T.6
-
13
-
-
33847720776
-
Predicting protein-protein interactions from protein domains using a set cover approach
-
Huang C., Morcos F., Kanaan S.P., Wuchty S., Chen D.Z., Izaguirre J.A. Predicting protein-protein interactions from protein domains using a set cover approach. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2007, 4:1-10.
-
(2007)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.4
, pp. 1-10
-
-
Huang, C.1
Morcos, F.2
Kanaan, S.P.3
Wuchty, S.4
Chen, D.Z.5
Izaguirre, J.A.6
-
14
-
-
0033523854
-
A combined algorithm for genome wide prediction of protein function
-
Marcotte E.M., Pellegrini M., Thompson M.J., Yeats T.O., Eisenberg D. A combined algorithm for genome wide prediction of protein function. Nature 1999, 402:83-86.
-
(1999)
Nature
, vol.402
, pp. 83-86
-
-
Marcotte, E.M.1
Pellegrini, M.2
Thompson, M.J.3
Yeats, T.O.4
Eisenberg, D.5
-
15
-
-
0038135024
-
Computational analyses of high-throughput protein-protein interaction data
-
Chen Y., Xu D. Computational analyses of high-throughput protein-protein interaction data. Current Protein and Peptide Science 2003, 4:159-181.
-
(2003)
Current Protein and Peptide Science
, vol.4
, pp. 159-181
-
-
Chen, Y.1
Xu, D.2
-
16
-
-
0037250152
-
STRING: a database of predicted functional associations between proteins
-
von Mering C., Huynen M., Jaeggi D., Schmidt S., Bork P., Snel B. STRING: a database of predicted functional associations between proteins. Nucleic Acids Research 2003, 31:258-261.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 258-261
-
-
von Mering, C.1
Huynen, M.2
Jaeggi, D.3
Schmidt, S.4
Bork, P.5
Snel, B.6
-
17
-
-
38949215411
-
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes
-
Sun J., Sun Y., Ding G., Liu Q., Wang C., He Y., et al. InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes. BMC Bioinformatics 2007, 8:414.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 414
-
-
Sun, J.1
Sun, Y.2
Ding, G.3
Liu, Q.4
Wang, C.5
He, Y.6
-
18
-
-
34547834154
-
False positive reduction in protein-protein interaction predictions using Gene Ontology Annotation
-
Mahdavi M.A., Lin Y. False positive reduction in protein-protein interaction predictions using Gene Ontology Annotation. BMC Bioinformatics 2007, 8:262.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 262
-
-
Mahdavi, M.A.1
Lin, Y.2
-
19
-
-
9144252016
-
The Gene Ontology Annotation (GOA) database: sharing knowledge in Uniprot with Gene Ontology
-
Camon E., Magrane M., Barrell D., Lee V., Dimmer E., Maslen J., et al. The Gene Ontology Annotation (GOA) database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Research 2005, 32:D262-D266.
-
(2005)
Nucleic Acids Research
, vol.32
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Lee, V.4
Dimmer, E.5
Maslen, J.6
-
20
-
-
24044434446
-
Filtering high-throughput protein-protein interaction data using a combination of genomic features
-
Patil A., Nakamura H. Filtering high-throughput protein-protein interaction data using a combination of genomic features. BMC Bioinformatics 2005, 6:100.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 100
-
-
Patil, A.1
Nakamura, H.2
-
22
-
-
2442671554
-
Predicting subcellular localization of proteins in a hybridization space
-
Cai Y.D., Chou K.C. Predicting subcellular localization of proteins in a hybridization space. Bioinformatics 2004, 20:1151-1156.
-
(2004)
Bioinformatics
, vol.20
, pp. 1151-1156
-
-
Cai, Y.D.1
Chou, K.C.2
-
23
-
-
33745759451
-
Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization
-
Chou K.C., Shen H.B. Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization. BBRC 2006, 347:150-157.
-
(2006)
BBRC
, vol.347
, pp. 150-157
-
-
Chou, K.C.1
Shen, H.B.2
-
24
-
-
33747197197
-
Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-nearest neighbor classifiers
-
Chou K.C., Shen H.B. Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-nearest neighbor classifiers. Journal of Proteome Research 2006, 5:1888-1897.
-
(2006)
Journal of Proteome Research
, vol.5
, pp. 1888-1897
-
-
Chou, K.C.1
Shen, H.B.2
-
25
-
-
34249318001
-
Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites
-
Chou K.C., Shen H.B. Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites. Journal of Proteome Research 2007, 6:1728-1734.
-
(2007)
Journal of Proteome Research
, vol.6
, pp. 1728-1734
-
-
Chou, K.C.1
Shen, H.B.2
-
26
-
-
33846605183
-
Large-scale plant protein subcellular location prediction
-
Chou K.C., Shen H.B. Large-scale plant protein subcellular location prediction. Journal of Cellular Biochemistry 2007, 100:665-678.
-
(2007)
Journal of Cellular Biochemistry
, vol.100
, pp. 665-678
-
-
Chou, K.C.1
Shen, H.B.2
-
27
-
-
34548606295
-
Review: recent progresses in protein subcellular location prediction
-
Chou K.C., Shen H.B. Review: recent progresses in protein subcellular location prediction. Analytical Biochemistry 2007, 370:1-16.
-
(2007)
Analytical Biochemistry
, vol.370
, pp. 1-16
-
-
Chou, K.C.1
Shen, H.B.2
-
28
-
-
39449105071
-
Cell-PLoc: a package of web-servers for predicting subcellular localization of proteins in various organisms
-
Chou K.C., Shen H.B. Cell-PLoc: a package of web-servers for predicting subcellular localization of proteins in various organisms. Nature Protocols 2008, 3:153-162.
-
(2008)
Nature Protocols
, vol.3
, pp. 153-162
-
-
Chou, K.C.1
Shen, H.B.2
-
30
-
-
13844280973
-
Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition
-
Cai Y.D., Zhou G.P., Chou K.C. Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition. Journal of Theoretical Biology 2005, 234:145-149.
-
(2005)
Journal of Theoretical Biology
, vol.234
, pp. 145-149
-
-
Cai, Y.D.1
Zhou, G.P.2
Chou, K.C.3
-
31
-
-
11844306688
-
Using GO-PseAA predictor to identify membrane proteins and their types
-
Chou K.C., Cai Y.D. Using GO-PseAA predictor to identify membrane proteins and their types. Biochemical Biophysics Research Communications 2005, 327:845-847.
-
(2005)
Biochemical Biophysics Research Communications
, vol.327
, pp. 845-847
-
-
Chou, K.C.1
Cai, Y.D.2
-
32
-
-
32344433486
-
Predicting protein-protein interactions from sequences in a hybridization space
-
Chou K.C., Cai Y.D. Predicting protein-protein interactions from sequences in a hybridization space. Journal of Proteome Research 2006, 5:316-322.
-
(2006)
Journal of Proteome Research
, vol.5
, pp. 316-322
-
-
Chou, K.C.1
Cai, Y.D.2
-
33
-
-
0034069495
-
Gene Ontology: tool for the unification of biology
-
Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.H., et al. Gene Ontology: tool for the unification of biology. Nature Genetics 2000, 25:25-29.
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.H.6
-
34
-
-
23444452564
-
Probabilistic model of the human protein-protein interaction network
-
Rhodes D.R., Tomlins S.A., Varambally S., Mahavisno V., Barrette T., Kalyana-Sundaram S., et al. Probabilistic model of the human protein-protein interaction network. Nature Biotechnology 2005, 23:951-959.
-
(2005)
Nature Biotechnology
, vol.23
, pp. 951-959
-
-
Rhodes, D.R.1
Tomlins, S.A.2
Varambally, S.3
Mahavisno, V.4
Barrette, T.5
Kalyana-Sundaram, S.6
-
35
-
-
33646358998
-
Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations
-
Wu J., Kasif S., DeLisi C. Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations. Nucleic Acids Research 2006, 19:2137-2150.
-
(2006)
Nucleic Acids Research
, vol.19
, pp. 2137-2150
-
-
Wu, J.1
Kasif, S.2
DeLisi, C.3
-
36
-
-
53149088565
-
The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks
-
Hsing M., Byler K.G., Cherkasov A. The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks. BMC Systems Biology 2008, 2:80.
-
(2008)
BMC Systems Biology
, vol.2
, pp. 80
-
-
Hsing, M.1
Byler, K.G.2
Cherkasov, A.3
-
37
-
-
40349106161
-
The landscapes of human proteins interacting with viruses and other pathogens
-
Dyer M.D., Murali T.M., Sobral B.W. The landscapes of human proteins interacting with viruses and other pathogens. PLOS Pathogens 2008, 4(2):e32.
-
(2008)
PLOS Pathogens
, vol.4
, Issue.2
-
-
Dyer, M.D.1
Murali, T.M.2
Sobral, B.W.3
-
38
-
-
0037480738
-
Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation
-
Lord P.W., Stevens R.D., Brass A., Goble C.A. Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 2003, 19:1275-1283.
-
(2003)
Bioinformatics
, vol.19
, pp. 1275-1283
-
-
Lord, P.W.1
Stevens, R.D.2
Brass, A.3
Goble, C.A.4
-
39
-
-
45249099137
-
Protein function assignment through mining cross-species protein-protein interactions
-
Chen X., Liu M., Ward R. Protein function assignment through mining cross-species protein-protein interactions. PLOS ONE 2008, 3(2):e1562.
-
(2008)
PLOS ONE
, vol.3
, Issue.2
-
-
Chen, X.1
Liu, M.2
Ward, R.3
-
40
-
-
33846040145
-
FlyBase: genomes by dozen
-
Crosby M.A., Goodman J.L., Strelets V.B., Zhang P., Gelbart W.M. FlyBase: genomes by dozen. Nucleic Acids Research 2007, 35:D486-D491.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Crosby, M.A.1
Goodman, J.L.2
Strelets, V.B.3
Zhang, P.4
Gelbart, W.M.5
-
41
-
-
26844545834
-
Review: progress in protein structural class prediction and its impact to bioinformatics and proteomics
-
Chou K.C. Review: progress in protein structural class prediction and its impact to bioinformatics and proteomics. Current Protein and Peptide Science 2005, 6:423-436.
-
(2005)
Current Protein and Peptide Science
, vol.6
, pp. 423-436
-
-
Chou, K.C.1
-
42
-
-
20844436424
-
Predicting enzyme subclass by functional domain composition and pseudo amino acid composition
-
Cai Y.D., Chou K.C. Predicting enzyme subclass by functional domain composition and pseudo amino acid composition. Journal of Proteome Research 2005, 4:967-971.
-
(2005)
Journal of Proteome Research
, vol.4
, pp. 967-971
-
-
Cai, Y.D.1
Chou, K.C.2
-
43
-
-
0037195776
-
Using functional domain composition and support vector machines for prediction of protein subcellular location
-
Chou K.C., Cai Y.D. Using functional domain composition and support vector machines for prediction of protein subcellular location. Journal of Biology Chemistry 2002, 277:45765-45769.
-
(2002)
Journal of Biology Chemistry
, vol.277
, pp. 45765-45769
-
-
Chou, K.C.1
Cai, Y.D.2
-
44
-
-
7444264582
-
Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudo-amino acid composition
-
Chou K.C., Cai Y.D. Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudo-amino acid composition. Journal of Cellular Biochemistry 2004, 91:1197-1203.
-
(2004)
Journal of Cellular Biochemistry
, vol.91
, pp. 1197-1203
-
-
Chou, K.C.1
Cai, Y.D.2
-
45
-
-
29244482784
-
Predicting membrane protein type by functional domain composition and pseudo amino acid composition
-
Cai Y.D., Chou K.C. Predicting membrane protein type by functional domain composition and pseudo amino acid composition. Journal of Theoretical Biology 2006, 238:395-400.
-
(2006)
Journal of Theoretical Biology
, vol.238
, pp. 395-400
-
-
Cai, Y.D.1
Chou, K.C.2
-
46
-
-
53149132374
-
ProtIdent: a web server for identifying proteases and their types by fusing functional domain and sequential evolution information
-
Chou K.C., Shen H.B. ProtIdent: a web server for identifying proteases and their types by fusing functional domain and sequential evolution information. Biochemical and Biophysical Research Communications 2008, 376:321-325.
-
(2008)
Biochemical and Biophysical Research Communications
, vol.376
, pp. 321-325
-
-
Chou, K.C.1
Shen, H.B.2
-
47
-
-
62649087986
-
Predicting protein quaternary structural attribute by hybridizing functional domain composition and pseudo amino acid composition
-
Xiao X., Wang P., Chou K.C. Predicting protein quaternary structural attribute by hybridizing functional domain composition and pseudo amino acid composition. Journal of Applied Crystallography 2009, 42:169-173.
-
(2009)
Journal of Applied Crystallography
, vol.42
, pp. 169-173
-
-
Xiao, X.1
Wang, P.2
Chou, K.C.3
-
48
-
-
34547837159
-
Evaluation of analytical methods using signal-noise ratio as a statistical criterion
-
Fujimori T., Miyazu T., Ishikawa K. Evaluation of analytical methods using signal-noise ratio as a statistical criterion. Microchemical Journal 1974, 19:74-85.
-
(1974)
Microchemical Journal
, vol.19
, pp. 74-85
-
-
Fujimori, T.1
Miyazu, T.2
Ishikawa, K.3
-
49
-
-
0033551248
-
-
Assigning protein functions by comparative genome analysis: protein phylogenetic profiles, in: Proceedings of the National Academy of Sciences USA.
-
M. Pellegrini, E.M. Marcotte, M.J. Thompson, D. Eisenberg, T.O. Yeates, Assigning protein functions by comparative genome analysis: protein phylogenetic profiles, in: Proceedings of the National Academy of Sciences USA; 1999, pp. 4285-88.
-
(1999)
, pp. 4285-88
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
50
-
-
0037407924
-
Predicting gene function by conserved co-expression
-
van Noort V., Snel B., Huynen M.A. Predicting gene function by conserved co-expression. TRENDS in Genetics 2003, 19:238-242.
-
(2003)
TRENDS in Genetics
, vol.19
, pp. 238-242
-
-
van Noort, V.1
Snel, B.2
Huynen, M.A.3
-
51
-
-
0041358614
-
Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages
-
Date S.V., Marcotte E.M. Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages. Nature Biotechnology 2003, 21:1055-1062.
-
(2003)
Nature Biotechnology
, vol.21
, pp. 1055-1062
-
-
Date, S.V.1
Marcotte, E.M.2
-
52
-
-
0036799752
-
Inferring domain-domain interactions from protein-protein interactions
-
Deng M., Mehta S., Sun F., Chen T. Inferring domain-domain interactions from protein-protein interactions. Genome Research 2002, 12:1540-1548.
-
(2002)
Genome Research
, vol.12
, pp. 1540-1548
-
-
Deng, M.1
Mehta, S.2
Sun, F.3
Chen, T.4
-
53
-
-
0000515372
-
InterPro: an integrated documentation resource for protein families, domains and functional sites
-
Mulder N.J., Apweiler R., Attwood T.K., Bairoch A., Bateman A., Binns D., et al. InterPro: an integrated documentation resource for protein families, domains and functional sites. Briefing in Bioinformatics 2002, 3:225-235.
-
(2002)
Briefing in Bioinformatics
, vol.3
, pp. 225-235
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
-
54
-
-
9144232912
-
UniProt: the universal protein knowledgebase
-
Apweiler R., Bairoch A., Wu C.H., Barker W.C., Boeckmann B., Ferro S., et al. UniProt: the universal protein knowledgebase. Nucleic Acids Research 2004, 32:D262-D266.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
-
55
-
-
77953363287
-
-
The Gene Ontology Consortium. AMIGO GO database release 21-10.
-
The Gene Ontology Consortium. AMIGO GO database release 21-10; 2008.. http://amigo.geneontology.org.
-
(2008)
-
-
-
56
-
-
0037474541
-
Structural characterization and functional significance of transient protein-protein interactions
-
Nooren I.M.A., Thornton J.N. Structural characterization and functional significance of transient protein-protein interactions. Journal of Molecular Biology 2003, 325:991-1018.
-
(2003)
Journal of Molecular Biology
, vol.325
, pp. 991-1018
-
-
Nooren, I.M.A.1
Thornton, J.N.2
-
57
-
-
19544393944
-
Protein function prediction using the protein link explorer (PLEX)
-
Date S.V., Marcotte E.M. Protein function prediction using the protein link explorer (PLEX). Bioinformatics 2005, 21:2558-2559.
-
(2005)
Bioinformatics
, vol.21
, pp. 2558-2559
-
-
Date, S.V.1
Marcotte, E.M.2
-
58
-
-
0035175010
-
The Stanford Microarray Database
-
Sherlock G., Boussard T.H., Kasarski A., Binkley G., Matese J.C., Dwight S.S., et al. The Stanford Microarray Database. Nucleic Acids Research 2001, 29:152-155.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 152-155
-
-
Sherlock, G.1
Boussard, T.H.2
Kasarski, A.3
Binkley, G.4
Matese, J.C.5
Dwight, S.S.6
-
59
-
-
0141506116
-
CLICK and EXPANDER: a system for clustering and visualizing gene expression data
-
Sharan R., Katz A.M., Shamir R. CLICK and EXPANDER: a system for clustering and visualizing gene expression data. Bioinformatics 2003, 19:1787-1799.
-
(2003)
Bioinformatics
, vol.19
, pp. 1787-1799
-
-
Sharan, R.1
Katz, A.M.2
Shamir, R.3
-
60
-
-
24044546509
-
Refined phylogenetic profiles method for predicting protein-protein interactions
-
Sun J., Xu J., Liu Z., Liu Q., Zhao A., Shi T., et al. Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinformatics 2005, 21:3409-3415.
-
(2005)
Bioinformatics
, vol.21
, pp. 3409-3415
-
-
Sun, J.1
Xu, J.2
Liu, Z.3
Liu, Q.4
Zhao, A.5
Shi, T.6
-
61
-
-
13444306676
-
CYGD: the comprehensive yeast genome database
-
Güldener U., Münsterkötter M., Kastenmüller G., Strack N., van Helden J., Lemer C., Richelles J. CYGD: the comprehensive yeast genome database. Nucleic Acids Research 2005, 33:D364-D368.
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Güldener, U.1
Münsterkötter, M.2
Kastenmüller, G.3
Strack, N.4
van Helden, J.5
Lemer, C.6
Richelles, J.7
-
62
-
-
0347755535
-
The database of interacting proteins: 2004 update
-
Salwinski L., Miller C.S., Smith A.J., Pettit F.K., Bowie J.U., Eisenberg D. The database of interacting proteins: 2004 update. Nucleic Acids Research 2004, 32:D449-D451.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
Eisenberg, D.6
-
63
-
-
33644873184
-
BioGRID: a general repository for interaction datasets
-
Stark C., Breitkreutz B.J., Reguly T., Boucher L., Breitkreutz A., Tyers M. BioGRID: a general repository for interaction datasets. Nucleic Acids Research 2006, 34:D535-D539.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Stark, C.1
Breitkreutz, B.J.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Tyers, M.6
-
64
-
-
33846073818
-
MINT: the molecular interaction database
-
Chatr-aryamontri A., Ceol A., Palazzi L.M., Nardelli G., Schneider M.V., Castagnoli L., et al. MINT: the molecular interaction database. Nucleic Acids Research 2007, 35:D572-D574.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Chatr-aryamontri, A.1
Ceol, A.2
Palazzi, L.M.3
Nardelli, G.4
Schneider, M.V.5
Castagnoli, L.6
-
65
-
-
10744224197
-
Development of human protein reference database as an initial platform for approaching systems biology in human
-
Peri S., Navarro J.D., Amanchy R., Kristiansen T.Z., Jonnalagadda C.K., Surendranath V., et al. Development of human protein reference database as an initial platform for approaching systems biology in human. Genome Research 2003, 13:2363-2371.
-
(2003)
Genome Research
, vol.13
, pp. 2363-2371
-
-
Peri, S.1
Navarro, J.D.2
Amanchy, R.3
Kristiansen, T.Z.4
Jonnalagadda, C.K.5
Surendranath, V.6
-
66
-
-
9144257886
-
The Pfam protein families database
-
Bateman A., Birney E., Cerruti L., Durbin R., Etwiller L., Eddy S.R., et al. The Pfam protein families database. Nucleic Acids Research 2004, 32:D138-D141.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
-
67
-
-
77953359541
-
-
Review: recent advances in developing web-servers for predicting protein attributes. Natural Science 2 () 63-92. (openly accessible at 〈〉).
-
K.C. Chou, H.B. Shen, Review: recent advances in developing web-servers for predicting protein attributes. Natural Science 2 (2009) 63-92. (openly accessible at 〈〉). http://www.scirp.org/journal/NS/.
-
(2009)
-
-
Chou, K.C.1
Shen, H.B.2
|