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Volumn 15, Issue 1, 2004, Pages 78-81

Bioinformatics and cellular signaling

Author keywords

[No Author keywords available]

Indexed keywords

BAY REGION BINDING SITE; BIOINFORMATICS; CELL ACTIVATION; GENE CONSTRUCT; GENE EXPRESSION REGULATION; GENE MAPPING; MAMMAL CELL; MATHEMATICAL MODEL; PREDICTION; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; REVIEW; TISSUE SPECIFICITY;

EID: 1242351307     PISSN: 09581669     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.copbio.2004.01.003     Document Type: Review
Times cited : (29)

References (27)
  • 1
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M., Shalon D., Davis R.W., Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 270:1995;467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 2
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi J.L., Iyer V.R., Brown P.O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278:1997;680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • Derisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 4
    • 0034704248 scopus 로고    scopus 로고
    • Genome-wide location and function of DNA binding proteins
    • Genome-wide location analysis, as described in this paper, has emerged as a powerful method for determining key relationships in regulatory networks.
    • Ren B., Robert F., Wyrick J.J., Aparicio O., Jennings E.G., Simon I., Zeitlinger J., Schreiber J., Hannett N., Kanin E.et al. Genome-wide location and function of DNA binding proteins. Science. 290:2000;2306-2309 Genome-wide location analysis, as described in this paper, has emerged as a powerful method for determining key relationships in regulatory networks.
    • (2000) Science , vol.290 , pp. 2306-2309
    • Ren, B.1    Robert, F.2    Wyrick, J.J.3    Aparicio, O.4    Jennings, E.G.5    Simon, I.6    Zeitlinger, J.7    Schreiber, J.8    Hannett, N.9    Kanin, E.10
  • 5
    • 18344396568 scopus 로고    scopus 로고
    • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
    • This proposal delineates a set of standards for presenting and interpreting microarray data. Such efforts for standardization will continue to be critical for the study of cellular signaling.
    • Brazma A., Hingamp P., Quackenbush J., Sherlock G., Spellman P., Stoeckert C., Aach J., Ansorge W., Ball C.A., Causton H.C.et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet. 29:2001;365-371 This proposal delineates a set of standards for presenting and interpreting microarray data. Such efforts for standardization will continue to be critical for the study of cellular signaling.
    • (2001) Nat Genet , vol.29 , pp. 365-371
    • Brazma, A.1    Hingamp, P.2    Quackenbush, J.3    Sherlock, G.4    Spellman, P.5    Stoeckert, C.6    Aach, J.7    Ansorge, W.8    Ball, C.A.9    Causton, H.C.10
  • 6
    • 0036899286 scopus 로고    scopus 로고
    • From patterns to pathways: Gene expression data analysis comes of age
    • Slonim D.K. From patterns to pathways: gene expression data analysis comes of age. Nat Genet. 32(Suppl):2002;502-508.
    • (2002) Nat Genet , vol.32 , Issue.SUPPL , pp. 502-508
    • Slonim, D.K.1
  • 9
    • 0035442412 scopus 로고    scopus 로고
    • The use of FRET imaging microscopy to detect protein-protein interactions and protein conformational changes in vivo
    • Truong K., Ikura M. The use of FRET imaging microscopy to detect protein-protein interactions and protein conformational changes in vivo. Curr Opin Struct Biol. 11:2001;573-578.
    • (2001) Curr Opin Struct Biol , vol.11 , pp. 573-578
    • Truong, K.1    Ikura, M.2
  • 15
    • 0242574985 scopus 로고    scopus 로고
    • Reconciling gene expression data with known genome-scale regulatory network structures
    • This paper describes a systematic comparison of regulatory networks from a literature-based reconstruction to regulatory rules deduced from high-throughput expression arrays.
    • Herrgard M.J., Covert M.W., Palsson B.O. Reconciling gene expression data with known genome-scale regulatory network structures. Genome Res. 13:2003;2423-2434 This paper describes a systematic comparison of regulatory networks from a literature-based reconstruction to regulatory rules deduced from high-throughput expression arrays.
    • (2003) Genome Res , vol.13 , pp. 2423-2434
    • Herrgard, M.J.1    Covert, M.W.2    Palsson, B.O.3
  • 16
    • 0037433037 scopus 로고    scopus 로고
    • The Database of Quantitative Cellular Signaling: Management and analysis of chemical kinetic models of signaling networks
    • Sivakumaran S., Hariharaputran S., Mishra J., Bhalla U.S. The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks. Bioinformatics. 19:2003;408-415.
    • (2003) Bioinformatics , vol.19 , pp. 408-415
    • Sivakumaran, S.1    Hariharaputran, S.2    Mishra, J.3    Bhalla, U.S.4
  • 17
    • 35649001607 scopus 로고
    • A quantitative description of membrane current and its application to conduction and excitation in nerve
    • Hodgkin A.L., Huxley A.F. A quantitative description of membrane current and its application to conduction and excitation in nerve. J Physiol. 117:1952;500-544.
    • (1952) J Physiol , vol.117 , pp. 500-544
    • Hodgkin, A.L.1    Huxley, A.F.2
  • 18
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • Jacob F., Monod J. Genetic regulatory mechanisms in the synthesis of proteins. J Mol Biol. 3:1961;318-356.
    • (1961) J Mol Biol , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 19
    • 0013863816 scopus 로고
    • Comparison of experimental binding data and theoretical models in proteins containing subunits
    • Koshland D.E. Jr., Nemethy G., Filmer D. Comparison of experimental binding data and theoretical models in proteins containing subunits. Biochemistry. 5:1966;365-385.
    • (1966) Biochemistry , vol.5 , pp. 365-385
    • Koshland, D.E.Jr.1    Nemethy, G.2    Filmer, D.3
  • 20
    • 0037385718 scopus 로고    scopus 로고
    • Genome-scale microbial in silico models: The constraints-based approach
    • Price N.D., Papin J.A., Schilling C.H., Palsson B.O. Genome-scale microbial in silico models: the constraints-based approach. Trends Biotechnol. 21:2003;162-169.
    • (2003) Trends Biotechnol , vol.21 , pp. 162-169
    • Price, N.D.1    Papin, J.A.2    Schilling, C.H.3    Palsson, B.O.4
  • 21
    • 0031879114 scopus 로고    scopus 로고
    • Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells
    • Arkin A., Ross J., McAdams H.H. Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells. Genetics. 149:1998;1633-1648.
    • (1998) Genetics , vol.149 , pp. 1633-1648
    • Arkin, A.1    Ross, J.2    McAdams, H.H.3
  • 22
    • 0033555859 scopus 로고    scopus 로고
    • Emergent properties of networks of biological signaling pathways
    • Bhalla U.S., Iyengar R. Emergent properties of networks of biological signaling pathways. Science. 283:1999;381-387.
    • (1999) Science , vol.283 , pp. 381-387
    • Bhalla, U.S.1    Iyengar, R.2
  • 24
    • 0035478586 scopus 로고    scopus 로고
    • The Virtual Cell: A software environment for computational cell biology
    • Loew L.M., Schaff J.C. The Virtual Cell: a software environment for computational cell biology. Trends Biotechnol. 19:2001;401-406.
    • (2001) Trends Biotechnol , vol.19 , pp. 401-406
    • Loew, L.M.1    Schaff, J.C.2
  • 25
    • 0037079023 scopus 로고    scopus 로고
    • Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
    • Ibarra R.U., Edwards J.S., Palsson B.O. Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. Nature. 420:2002;186-189.
    • (2002) Nature , vol.420 , pp. 186-189
    • Ibarra, R.U.1    Edwards, J.S.2    Palsson, B.O.3
  • 26
    • 0037008673 scopus 로고    scopus 로고
    • Transcriptional regulation in constraints-based metabolic models of Escherichia coli
    • Covert M.W., Palsson B.O. Transcriptional regulation in constraints-based metabolic models of Escherichia coli. J Biol Chem. 277:2002;28058-28064.
    • (2002) J Biol Chem , vol.277 , pp. 28058-28064
    • Covert, M.W.1    Palsson, B.O.2
  • 27
    • 0029028963 scopus 로고
    • Circuit simulation of genetic networks
    • McAdams H.H., Shapiro L. Circuit simulation of genetic networks. Science. 269:1995;650-656.
    • (1995) Science , vol.269 , pp. 650-656
    • McAdams, H.H.1    Shapiro, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.