-
1
-
-
0034716987
-
EST comparison indicates 38% of human mRNAs contain possible alternative splice forms
-
10.1016/S0014-5793(00)01581-7. 10828456
-
EST comparison indicates 38% of human mRNAs contain possible alternative splice forms. D Brett J Hanke G Lehmann S Haase S Delbruck S Krueger,, et al. FEBS Lett 2000 474 83 86 10.1016/S0014-5793(00)01581-7 10828456
-
(2000)
FEBS Lett
, vol.474
, pp. 83-86
-
-
Brett, D.1
Hanke, J.2
Lehmann, G.3
Haase, S.4
Delbruck, S.5
Krueger, S.6
-
2
-
-
0034029236
-
ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome
-
10.1038/74153. 10742092
-
ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome. L Croft S Schandorff F Clark K Burrage P Arctander JS Mattick, Nat Genet 2000 24 340 341 10.1038/74153 10742092
-
(2000)
Nat Genet
, vol.24
, pp. 340-341
-
-
Croft, L.1
Schandorff, S.2
Clark, F.3
Burrage, K.4
Arctander, P.5
Mattick, J.S.6
-
3
-
-
0035036534
-
Gene structure prediction and alternative splicing analysis using genomically aligned ESTs
-
10.1101/gr.155001. 11337482
-
Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Z Kan EC Rouchka WR Gish DJ States, Genome Res 2001 11 889 900 10.1101/gr.155001 11337482
-
(2001)
Genome Res
, vol.11
, pp. 889-900
-
-
Kan, Z.1
Rouchka, E.C.2
Gish, W.R.3
States, D.J.4
-
4
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
10.1038/35057062. 11237011
-
Initial sequencing and analysis of the human genome. ES Lander LM Linton B Birren C Nusbaum MC Zody J Baldwin,, et al. Nature 2001 409 860 921 10.1038/35057062 11237011
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
-
5
-
-
0342723790
-
Frequent alternative splicing of human genes
-
10.1101/gr.9.12.1288. 10613851
-
Frequent alternative splicing of human genes. AA Mironov JW Fickett MS Gelfand, Genome Res 1999 9 1288 1293 10.1101/gr.9.12.1288 10613851
-
(1999)
Genome Res
, vol.9
, pp. 1288-1293
-
-
Mironov, A.A.1
Fickett, J.W.2
Gelfand, M.S.3
-
6
-
-
0035393343
-
Genome-wide detection of alternative splicing in expressed sequences of human genes
-
10.1093/nar/29.13.2850. 11433032
-
Genome-wide detection of alternative splicing in expressed sequences of human genes. B Modrek A Resch C Grasso C Lee, Nucleic Acids Res 2001 29 2850 2859 10.1093/nar/29.13.2850 11433032
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2850-2859
-
-
Modrek, B.1
Resch, A.2
Grasso, C.3
Lee, C.4
-
7
-
-
33846036722
-
The ASAP II database: Analysis and comparative genomics of alternative splicing in 15 animal species
-
10.1093/nar/gkl884. 17108355
-
The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. N Kim AV Alekseyenko M Roy C Lee, Nucleic Acids Res 2007 35 93 D98 10.1093/nar/gkl884 17108355
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kim, N.1
Alekseyenko, A.V.2
Roy, M.3
Lee, C.4
-
8
-
-
33846681383
-
Different levels of alternative splicing among eukaryotes
-
10.1093/nar/gkl924. 17158149
-
Different levels of alternative splicing among eukaryotes. E Kim A Magen G Ast, Nucleic Acids Res 2007 35 125 131 10.1093/nar/gkl924 17158149
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 125-131
-
-
Kim, E.1
Magen, A.2
Ast, G.3
-
9
-
-
0037669010
-
Low conservation of alternative splicing patterns in the human and mouse genomes
-
10.1093/hmg/ddg137. 12761046
-
Low conservation of alternative splicing patterns in the human and mouse genomes. RN Nurtdinov II Artamonova AA Mironov MS Gelfand, Hum Mol Genet 2003 12 1313 1320 10.1093/hmg/ddg137 12761046
-
(2003)
Hum Mol Genet
, vol.12
, pp. 1313-1320
-
-
Nurtdinov, R.N.1
Artamonova, I.I.2
Mironov, A.A.3
Gelfand, M.S.4
-
10
-
-
0037705467
-
Conservation of human alternative splice events in mouse
-
10.1093/nar/gkg355. 12736303
-
Conservation of human alternative splice events in mouse. TA Thanaraj F Clark J Muilu, Nucleic Acids Res 2003 31 2544 2552 10.1093/nar/gkg355 12736303
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2544-2552
-
-
Thanaraj, T.A.1
Clark, F.2
Muilu, J.3
-
11
-
-
18744390284
-
Selecting for functional alternative splices in ESTs
-
10.1101/gr.764102. 12466287
-
Selecting for functional alternative splices in ESTs. Z Kan D States W Gish, Genome Res 2002 12 1837 1845 10.1101/gr.764102 12466287
-
(2002)
Genome Res
, vol.12
, pp. 1837-1845
-
-
Kan, Z.1
States, D.2
Gish, W.3
-
12
-
-
9144258614
-
Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing
-
10.1186/1471-2164-5-72. 15453915
-
Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing. S Gupta D Zink B Korn M Vingron SA Haas, Bmc Genomics 2004 5 72 10.1186/1471-2164-5-72 15453915
-
(2004)
Bmc Genomics
, vol.5
, pp. 72
-
-
Gupta, S.1
Zink, D.2
Korn, B.3
Vingron, M.4
Haas, S.A.5
-
13
-
-
0038652123
-
Heart-specific genes revealed by expressed sequence tag (EST) sampling
-
RESEARCH0074
-
Heart-specific genes revealed by expressed sequence tag (EST) sampling. K Megy S Audic JM Claverie, Genome Biol 2002 3 ESEARCH0074 12537563
-
(2002)
Genome Biol
, vol.3
-
-
Megy, K.1
Audic, S.2
Claverie, J.M.3
-
14
-
-
0036712421
-
Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
-
10.1093/nar/gkf492. 12202761
-
Genome-wide detection of tissue-specific alternative splicing in the human transcriptome. Q Xu B Modrek C Lee, Nucleic Acids Res 2002 30 3754 3766 10.1093/nar/gkf492 12202761
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3754-3766
-
-
Xu, Q.1
Modrek, B.2
Lee, C.3
-
15
-
-
27944458349
-
Visualization of alternative splicing in vivo
-
10.1016/j.ymeth.2005.07.017. 16314265
-
Visualization of alternative splicing in vivo. PR Kemp PD Ellis CW Smith, Methods 2005 37 360 367 10.1016/j.ymeth.2005.07.017 16314265
-
(2005)
Methods
, vol.37
, pp. 360-367
-
-
Kemp, P.R.1
Ellis, P.D.2
Smith, C.W.3
-
16
-
-
1642473041
-
How prevalent is functional alternative splicing in the human genome?
-
10.1016/j.tig.2003.12.004. 14746986
-
How prevalent is functional alternative splicing in the human genome? R Sorek R Shamir G Ast, Trends Genet 2004 20 68 71 10.1016/j.tig.2003.12.004 14746986
-
(2004)
Trends Genet
, vol.20
, pp. 68-71
-
-
Sorek, R.1
Shamir, R.2
Ast, G.3
-
17
-
-
0036337915
-
A genomic view of alternative splicing
-
10.1038/ng0102-13. 11753382
-
A genomic view of alternative splicing. B Modrek C Lee, Nat Genet 2002 30 13 19 10.1038/ng0102-13 11753382
-
(2002)
Nat Genet
, vol.30
, pp. 13-19
-
-
Modrek, B.1
Lee, C.2
-
18
-
-
0034533608
-
An alternative-exon database and its statistical analysis
-
10.1089/104454900750058107. 11177572
-
An alternative-exon database and its statistical analysis. S Stamm J Zhu K Nakai P Stoilov O Stoss MQ Zhang, DNA Cell Biol 2000 19 739 756 10.1089/104454900750058107 11177572
-
(2000)
DNA Cell Biol
, vol.19
, pp. 739-756
-
-
Stamm, S.1
Zhu, J.2
Nakai, K.3
Stoilov, P.4
Stoss, O.5
Zhang, M.Q.6
-
21
-
-
0037246718
-
ASAP: The alternative splicing annotation project
-
10.1093/nar/gkg029. 12519958
-
ASAP: the Alternative Splicing Annotation Project. C Lee L Atanelov B Modrek Y Xing, Nucleic Acids Res 2003 31 101 105 10.1093/nar/gkg029 12519958
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 101-105
-
-
Lee, C.1
Atanelov, L.2
Modrek, B.3
Xing, Y.4
-
23
-
-
34547831828
-
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
-
10.1186/gb-2007-8-4-r45. 17407547
-
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. J Gorodkin S Cirera J Hedegaard MJ Gilchrist F Panitz C Jorgensen,, et al. Genome Biol 2007 8 45 10.1186/gb-2007-8-4-r45 17407547
-
(2007)
Genome Biol
, vol.8
-
-
Gorodkin, J.1
Cirera, S.2
Hedegaard, J.3
Gilchrist, M.J.4
Panitz, F.5
Jorgensen, C.6
-
24
-
-
9144252016
-
The Gene Ontology Annotation (GOA) Database: Sharing knowledge in Uniprot with Gene Oncology
-
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. E Camon M Magrane D Barrell V Lee E Dimmer J Maslen,, et al. Nucleic Acids Res 2004 32 262 D266 10.1093/nar/gkh021 14681408 (Pubitemid 38081652)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Lee, V.4
Dimmer, E.5
Maslen, J.6
Binns, D.7
Harte, N.8
Lopez, R.9
Apweiler, R.10
-
25
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
10.1038/nature01262. 12466850
-
Initial sequencing and comparative analysis of the mouse genome. RH Waterston K Lindblad-Toh E Birney J Rogers JF Abril P Agarwal,, et al. Nature 2002 420 520 562 10.1038/nature01262 12466850
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
-
27
-
-
0347623371
-
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
-
10.1126/science.1090100. 14684825
-
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. JM Johnson J Castle P Garrett-Engele Z Kan PM Loerch CD Armour,, et al. Science 2003 302 2141 2144 10.1126/science.1090100 14684825
-
(2003)
Science
, vol.302
, pp. 2141-2144
-
-
Johnson, J.M.1
Castle, J.2
Garrett-Engele, P.3
Kan, Z.4
Loerch, P.M.5
Armour, C.D.6
-
28
-
-
2442551589
-
Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment
-
10.1038/sj.onc.1207362. 15048092
-
Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment. L Hui X Zhang X Wu Z Lin Q Wang Y Li,, et al. Oncogene 2004 23 3013 3023 10.1038/sj.onc.1207362 15048092
-
(2004)
Oncogene
, vol.23
, pp. 3013-3023
-
-
Hui, L.1
Zhang, X.2
Wu, X.3
Lin, Z.4
Wang, Q.5
Li, Y.6
-
29
-
-
0141974926
-
Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences
-
10.1093/nar/gkg786. 14500827
-
Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences. Q Xu C Lee, Nucleic Acids Res 2003 31 5635 5643 10.1093/nar/gkg786 14500827
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5635-5643
-
-
Xu, Q.1
Lee, C.2
-
30
-
-
0030188330
-
Evaluation and characterization of a porcine small intestine cDNA library: Analysis of 839 clones
-
10.1007/s003359900153. 8672129
-
Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones. AK Wintero M Fredholm W Davies, Mamm Genome 1996 7 509 517 10.1007/s003359900153 8672129
-
(1996)
Mamm Genome
, vol.7
, pp. 509-517
-
-
Wintero, A.K.1
Fredholm, M.2
Davies, W.3
-
31
-
-
0347755533
-
PEDE (Pig EST Data Explorer): Construction of a database for ESTs derived from porcine full-length cDNA libraries
-
10.1093/nar/gkh037. 14681463
-
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. H Uenishi T Eguchi K Suzuki T Sawazaki D Toki H Shinkai,, et al. Nucleic Acids Res 2004 32 484 D488 10.1093/nar/gkh037 14681463
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Uenishi, H.1
Eguchi, T.2
Suzuki, K.3
Sawazaki, T.4
Toki, D.5
Shinkai, H.6
-
32
-
-
1842587652
-
Development of a porcine brain cDNA library, EST database, and microarray resource
-
10.1152/physiolgenomics.00099.2003. 14559975
-
Development of a porcine brain cDNA library, EST database, and microarray resource. W Nobis X Ren SP Suchyta TR Suchyta AJ Zanella PM Coussens, Physiol Genomics 2003 16 153 159 10.1152/physiolgenomics.00099.2003 14559975
-
(2003)
Physiol Genomics
, vol.16
, pp. 153-159
-
-
Nobis, W.1
Ren, X.2
Suchyta, S.P.3
Suchyta, T.R.4
Zanella, A.J.5
Coussens, P.M.6
-
33
-
-
33645974886
-
Generation and analysis of large-scale expressed sequence tags (ESTs) from a full-length enriched cDNA library of porcine backfat tissue
-
10.1186/1471-2164-7-36. 16504160
-
Generation and analysis of large-scale expressed sequence tags (ESTs) from a full-length enriched cDNA library of porcine backfat tissue. TH Kim NS Kim D Lim KT Lee JH Oh HS Park,, et al. Bmc Genomics 2006 7 36 10.1186/1471-2164-7-36 16504160
-
(2006)
Bmc Genomics
, vol.7
, pp. 36
-
-
Kim, T.H.1
Kim, N.S.2
Lim, D.3
Lee, K.T.4
Oh, J.H.5
Park, H.S.6
-
34
-
-
0038617729
-
Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
-
10.1038/ng1159. 12730695
-
Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. B Modrek CJ Lee, Nat Genet 2003 34 177 180 10.1038/ng1159 12730695
-
(2003)
Nat Genet
, vol.34
, pp. 177-180
-
-
Modrek, B.1
Lee, C.J.2
-
35
-
-
36248942556
-
Global analysis of alternative splicing differences between humans and chimpanzees
-
DOI 10.1101/gad.1606907
-
Global analysis of alternative splicing differences between humans and chimpanzees. JA Calarco Y Xing M Caceres JP Calarco X Xiao Q Pan,, et al. Genes Dev 2007 21 2963 2975 10.1101/gad.1606907 17978102 (Pubitemid 350133443)
-
(2007)
Genes and Development
, vol.21
, Issue.22
, pp. 2963-2975
-
-
Calarco, J.A.1
Xing, Y.2
Caceres, M.3
Calarco, J.P.4
Xiao, X.5
Pan, Q.6
Lee, C.7
Preuss, T.M.8
Blencowe, B.J.9
-
36
-
-
34247360831
-
Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes
-
10.1261/rna.325107. 17369312
-
Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes. AV Alekseyenko N Kim CJ Lee, RNA 2007 13 661 670 10.1261/rna.325107 17369312
-
(2007)
RNA
, vol.13
, pp. 661-670
-
-
Alekseyenko, A.V.1
Kim, N.2
Lee, C.J.3
-
37
-
-
3042540826
-
Defining a large set of full-length clones from a Xenopus tropicalis EST project
-
10.1016/j.ydbio.2004.04.023. 15223350
-
Defining a large set of full-length clones from a Xenopus tropicalis EST project. MJ Gilchrist AM Zorn J Voigt JC Smith N Papalopulu E Amaya, Dev Biol 2004 271 498 516 10.1016/j.ydbio.2004.04.023 15223350
-
(2004)
Dev Biol
, vol.271
, pp. 498-516
-
-
Gilchrist, M.J.1
Zorn, A.M.2
Voigt, J.3
Smith, J.C.4
Papalopulu, N.5
Amaya, E.6
-
38
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
10547847
-
Primer3 on the WWW for general users and for biologist programmers. S Rozen H Skaletsky, Methods Mol Biol 2000 132 365 386 10547847
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
39
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
10.1093/nar/gkg595. 12824337
-
Mfold web server for nucleic acid folding and hybridization prediction. M Zuker, Nucleic Acids Res 2003 31 3406 3415 10.1093/nar/gkg595 12824337
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
40
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
RESEARCH0034 10.1186/gb-2002-3-7-research0034. 12184808
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. J Vandesompele K De Preter F Pattyn B Poppe N Van Roy A De Paepe,, et al. Genome Biol 2002 3 ESEARCH0034 10.1186/gb-2002-3-7-research0034 12184808
-
(2002)
Genome Biol
, vol.3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
-
41
-
-
34948893564
-
Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR
-
10.1186/1471-2199-8-67. 17697375
-
Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR. AB Nygard CB Jorgensen S Cirera M Fredholm, BMC Mol Biol 2007 8 67 10.1186/1471-2199-8-67 17697375
-
(2007)
BMC Mol Biol
, vol.8
, pp. 67
-
-
Nygard, A.B.1
Jorgensen, C.B.2
Cirera, S.3
Fredholm, M.4
-
42
-
-
33748799692
-
Addressing fluorogenic real-time qPCR inhibition using the novel custom Excel file system 'FocusField2-6GallupqPCRSet-upTool-001' to attain consistently high fidelity qPCR reactions
-
10.1251/bpo122. 17033699
-
Addressing fluorogenic real-time qPCR inhibition using the novel custom Excel file system 'FocusField2-6GallupqPCRSet-upTool-001' to attain consistently high fidelity qPCR reactions. JM Gallup MR Ackermann, Biol Proced Online 2006 8 87 152 10.1251/bpo122 17033699
-
(2006)
Biol Proced Online
, vol.8
, pp. 87-152
-
-
Gallup, J.M.1
Ackermann, M.R.2
|