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Volumn 3, Issue , 2010, Pages

A study of alternative splicing in the pig

Author keywords

[No Author keywords available]

Indexed keywords

MAMMALIA; RODENTIA; SUIDAE; SUS; SUS SCROFA DOMESTICA;

EID: 77953303606     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-3-123     Document Type: Article
Times cited : (13)

References (42)
  • 1
    • 0034716987 scopus 로고    scopus 로고
    • EST comparison indicates 38% of human mRNAs contain possible alternative splice forms
    • 10.1016/S0014-5793(00)01581-7. 10828456
    • EST comparison indicates 38% of human mRNAs contain possible alternative splice forms. D Brett J Hanke G Lehmann S Haase S Delbruck S Krueger,, et al. FEBS Lett 2000 474 83 86 10.1016/S0014-5793(00)01581-7 10828456
    • (2000) FEBS Lett , vol.474 , pp. 83-86
    • Brett, D.1    Hanke, J.2    Lehmann, G.3    Haase, S.4    Delbruck, S.5    Krueger, S.6
  • 2
    • 0034029236 scopus 로고    scopus 로고
    • ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome
    • 10.1038/74153. 10742092
    • ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome. L Croft S Schandorff F Clark K Burrage P Arctander JS Mattick, Nat Genet 2000 24 340 341 10.1038/74153 10742092
    • (2000) Nat Genet , vol.24 , pp. 340-341
    • Croft, L.1    Schandorff, S.2    Clark, F.3    Burrage, K.4    Arctander, P.5    Mattick, J.S.6
  • 3
    • 0035036534 scopus 로고    scopus 로고
    • Gene structure prediction and alternative splicing analysis using genomically aligned ESTs
    • 10.1101/gr.155001. 11337482
    • Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Z Kan EC Rouchka WR Gish DJ States, Genome Res 2001 11 889 900 10.1101/gr.155001 11337482
    • (2001) Genome Res , vol.11 , pp. 889-900
    • Kan, Z.1    Rouchka, E.C.2    Gish, W.R.3    States, D.J.4
  • 4
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • 10.1038/35057062. 11237011
    • Initial sequencing and analysis of the human genome. ES Lander LM Linton B Birren C Nusbaum MC Zody J Baldwin,, et al. Nature 2001 409 860 921 10.1038/35057062 11237011
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3    Nusbaum, C.4    Zody, M.C.5    Baldwin, J.6
  • 5
    • 0342723790 scopus 로고    scopus 로고
    • Frequent alternative splicing of human genes
    • 10.1101/gr.9.12.1288. 10613851
    • Frequent alternative splicing of human genes. AA Mironov JW Fickett MS Gelfand, Genome Res 1999 9 1288 1293 10.1101/gr.9.12.1288 10613851
    • (1999) Genome Res , vol.9 , pp. 1288-1293
    • Mironov, A.A.1    Fickett, J.W.2    Gelfand, M.S.3
  • 6
    • 0035393343 scopus 로고    scopus 로고
    • Genome-wide detection of alternative splicing in expressed sequences of human genes
    • 10.1093/nar/29.13.2850. 11433032
    • Genome-wide detection of alternative splicing in expressed sequences of human genes. B Modrek A Resch C Grasso C Lee, Nucleic Acids Res 2001 29 2850 2859 10.1093/nar/29.13.2850 11433032
    • (2001) Nucleic Acids Res , vol.29 , pp. 2850-2859
    • Modrek, B.1    Resch, A.2    Grasso, C.3    Lee, C.4
  • 7
    • 33846036722 scopus 로고    scopus 로고
    • The ASAP II database: Analysis and comparative genomics of alternative splicing in 15 animal species
    • 10.1093/nar/gkl884. 17108355
    • The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. N Kim AV Alekseyenko M Roy C Lee, Nucleic Acids Res 2007 35 93 D98 10.1093/nar/gkl884 17108355
    • (2007) Nucleic Acids Res , vol.35
    • Kim, N.1    Alekseyenko, A.V.2    Roy, M.3    Lee, C.4
  • 8
    • 33846681383 scopus 로고    scopus 로고
    • Different levels of alternative splicing among eukaryotes
    • 10.1093/nar/gkl924. 17158149
    • Different levels of alternative splicing among eukaryotes. E Kim A Magen G Ast, Nucleic Acids Res 2007 35 125 131 10.1093/nar/gkl924 17158149
    • (2007) Nucleic Acids Res , vol.35 , pp. 125-131
    • Kim, E.1    Magen, A.2    Ast, G.3
  • 9
    • 0037669010 scopus 로고    scopus 로고
    • Low conservation of alternative splicing patterns in the human and mouse genomes
    • 10.1093/hmg/ddg137. 12761046
    • Low conservation of alternative splicing patterns in the human and mouse genomes. RN Nurtdinov II Artamonova AA Mironov MS Gelfand, Hum Mol Genet 2003 12 1313 1320 10.1093/hmg/ddg137 12761046
    • (2003) Hum Mol Genet , vol.12 , pp. 1313-1320
    • Nurtdinov, R.N.1    Artamonova, I.I.2    Mironov, A.A.3    Gelfand, M.S.4
  • 10
    • 0037705467 scopus 로고    scopus 로고
    • Conservation of human alternative splice events in mouse
    • 10.1093/nar/gkg355. 12736303
    • Conservation of human alternative splice events in mouse. TA Thanaraj F Clark J Muilu, Nucleic Acids Res 2003 31 2544 2552 10.1093/nar/gkg355 12736303
    • (2003) Nucleic Acids Res , vol.31 , pp. 2544-2552
    • Thanaraj, T.A.1    Clark, F.2    Muilu, J.3
  • 11
    • 18744390284 scopus 로고    scopus 로고
    • Selecting for functional alternative splices in ESTs
    • 10.1101/gr.764102. 12466287
    • Selecting for functional alternative splices in ESTs. Z Kan D States W Gish, Genome Res 2002 12 1837 1845 10.1101/gr.764102 12466287
    • (2002) Genome Res , vol.12 , pp. 1837-1845
    • Kan, Z.1    States, D.2    Gish, W.3
  • 12
    • 9144258614 scopus 로고    scopus 로고
    • Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing
    • 10.1186/1471-2164-5-72. 15453915
    • Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing. S Gupta D Zink B Korn M Vingron SA Haas, Bmc Genomics 2004 5 72 10.1186/1471-2164-5-72 15453915
    • (2004) Bmc Genomics , vol.5 , pp. 72
    • Gupta, S.1    Zink, D.2    Korn, B.3    Vingron, M.4    Haas, S.A.5
  • 13
    • 0038652123 scopus 로고    scopus 로고
    • Heart-specific genes revealed by expressed sequence tag (EST) sampling
    • RESEARCH0074
    • Heart-specific genes revealed by expressed sequence tag (EST) sampling. K Megy S Audic JM Claverie, Genome Biol 2002 3 ESEARCH0074 12537563
    • (2002) Genome Biol , vol.3
    • Megy, K.1    Audic, S.2    Claverie, J.M.3
  • 14
    • 0036712421 scopus 로고    scopus 로고
    • Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
    • 10.1093/nar/gkf492. 12202761
    • Genome-wide detection of tissue-specific alternative splicing in the human transcriptome. Q Xu B Modrek C Lee, Nucleic Acids Res 2002 30 3754 3766 10.1093/nar/gkf492 12202761
    • (2002) Nucleic Acids Res , vol.30 , pp. 3754-3766
    • Xu, Q.1    Modrek, B.2    Lee, C.3
  • 15
    • 27944458349 scopus 로고    scopus 로고
    • Visualization of alternative splicing in vivo
    • 10.1016/j.ymeth.2005.07.017. 16314265
    • Visualization of alternative splicing in vivo. PR Kemp PD Ellis CW Smith, Methods 2005 37 360 367 10.1016/j.ymeth.2005.07.017 16314265
    • (2005) Methods , vol.37 , pp. 360-367
    • Kemp, P.R.1    Ellis, P.D.2    Smith, C.W.3
  • 16
    • 1642473041 scopus 로고    scopus 로고
    • How prevalent is functional alternative splicing in the human genome?
    • 10.1016/j.tig.2003.12.004. 14746986
    • How prevalent is functional alternative splicing in the human genome? R Sorek R Shamir G Ast, Trends Genet 2004 20 68 71 10.1016/j.tig.2003.12.004 14746986
    • (2004) Trends Genet , vol.20 , pp. 68-71
    • Sorek, R.1    Shamir, R.2    Ast, G.3
  • 17
    • 0036337915 scopus 로고    scopus 로고
    • A genomic view of alternative splicing
    • 10.1038/ng0102-13. 11753382
    • A genomic view of alternative splicing. B Modrek C Lee, Nat Genet 2002 30 13 19 10.1038/ng0102-13 11753382
    • (2002) Nat Genet , vol.30 , pp. 13-19
    • Modrek, B.1    Lee, C.2
  • 18
    • 0034533608 scopus 로고    scopus 로고
    • An alternative-exon database and its statistical analysis
    • 10.1089/104454900750058107. 11177572
    • An alternative-exon database and its statistical analysis. S Stamm J Zhu K Nakai P Stoilov O Stoss MQ Zhang, DNA Cell Biol 2000 19 739 756 10.1089/104454900750058107 11177572
    • (2000) DNA Cell Biol , vol.19 , pp. 739-756
    • Stamm, S.1    Zhu, J.2    Nakai, K.3    Stoilov, P.4    Stoss, O.5    Zhang, M.Q.6
  • 19
    • 0033965858 scopus 로고    scopus 로고
    • ASDB: Database of alternatively spliced genes
    • 10.1093/nar/28.1.296. 10592252
    • ASDB: database of alternatively spliced genes. I Dralyuk M Brudno MS Gelfand M Zorn I Dubchak, Nucleic Acids Res 2000 28 296 297 10.1093/nar/28.1.296 10592252
    • (2000) Nucleic Acids Res , vol.28 , pp. 296-297
    • Dralyuk, I.1    Brudno, M.2    Gelfand, M.S.3    Zorn, M.4    Dubchak, I.5
  • 20
    • 0036081021 scopus 로고    scopus 로고
    • PALS db: Putative Alternative Splicing database
    • 10.1093/nar/30.1.186. 11752289
    • PALS db: Putative Alternative Splicing database. YH Huang YT Chen JJ Lai ST Yang UC Yang, Nucleic Acids Res 2002 30 186 190 10.1093/nar/30.1.186 11752289
    • (2002) Nucleic Acids Res , vol.30 , pp. 186-190
    • Huang, Y.H.1    Chen, Y.T.2    Lai, J.J.3    Yang, S.T.4    Yang, U.C.5
  • 21
    • 0037246718 scopus 로고    scopus 로고
    • ASAP: The alternative splicing annotation project
    • 10.1093/nar/gkg029. 12519958
    • ASAP: the Alternative Splicing Annotation Project. C Lee L Atanelov B Modrek Y Xing, Nucleic Acids Res 2003 31 101 105 10.1093/nar/gkg029 12519958
    • (2003) Nucleic Acids Res , vol.31 , pp. 101-105
    • Lee, C.1    Atanelov, L.2    Modrek, B.3    Xing, Y.4
  • 23
    • 34547831828 scopus 로고    scopus 로고
    • Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
    • 10.1186/gb-2007-8-4-r45. 17407547
    • Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. J Gorodkin S Cirera J Hedegaard MJ Gilchrist F Panitz C Jorgensen,, et al. Genome Biol 2007 8 45 10.1186/gb-2007-8-4-r45 17407547
    • (2007) Genome Biol , vol.8
    • Gorodkin, J.1    Cirera, S.2    Hedegaard, J.3    Gilchrist, M.J.4    Panitz, F.5    Jorgensen, C.6
  • 25
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • 10.1038/nature01262. 12466850
    • Initial sequencing and comparative analysis of the mouse genome. RH Waterston K Lindblad-Toh E Birney J Rogers JF Abril P Agarwal,, et al. Nature 2002 420 520 562 10.1038/nature01262 12466850
    • (2002) Nature , vol.420 , pp. 520-562
    • Waterston, R.H.1    Lindblad-Toh, K.2    Birney, E.3    Rogers, J.4    Abril, J.F.5    Agarwal, P.6
  • 26
    • 0036338127 scopus 로고    scopus 로고
    • Alternative splicing and genome complexity
    • 10.1038/ng803. 11743582
    • Alternative splicing and genome complexity. D Brett H Pospisil J Valcarcel J Reich P Bork, Nat Genet 2002 30 29 30 10.1038/ng803 11743582
    • (2002) Nat Genet , vol.30 , pp. 29-30
    • Brett, D.1    Pospisil, H.2    Valcarcel, J.3    Reich, J.4    Bork, P.5
  • 27
    • 0347623371 scopus 로고    scopus 로고
    • Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
    • 10.1126/science.1090100. 14684825
    • Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. JM Johnson J Castle P Garrett-Engele Z Kan PM Loerch CD Armour,, et al. Science 2003 302 2141 2144 10.1126/science.1090100 14684825
    • (2003) Science , vol.302 , pp. 2141-2144
    • Johnson, J.M.1    Castle, J.2    Garrett-Engele, P.3    Kan, Z.4    Loerch, P.M.5    Armour, C.D.6
  • 28
    • 2442551589 scopus 로고    scopus 로고
    • Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment
    • 10.1038/sj.onc.1207362. 15048092
    • Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment. L Hui X Zhang X Wu Z Lin Q Wang Y Li,, et al. Oncogene 2004 23 3013 3023 10.1038/sj.onc.1207362 15048092
    • (2004) Oncogene , vol.23 , pp. 3013-3023
    • Hui, L.1    Zhang, X.2    Wu, X.3    Lin, Z.4    Wang, Q.5    Li, Y.6
  • 29
    • 0141974926 scopus 로고    scopus 로고
    • Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences
    • 10.1093/nar/gkg786. 14500827
    • Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences. Q Xu C Lee, Nucleic Acids Res 2003 31 5635 5643 10.1093/nar/gkg786 14500827
    • (2003) Nucleic Acids Res , vol.31 , pp. 5635-5643
    • Xu, Q.1    Lee, C.2
  • 30
    • 0030188330 scopus 로고    scopus 로고
    • Evaluation and characterization of a porcine small intestine cDNA library: Analysis of 839 clones
    • 10.1007/s003359900153. 8672129
    • Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones. AK Wintero M Fredholm W Davies, Mamm Genome 1996 7 509 517 10.1007/s003359900153 8672129
    • (1996) Mamm Genome , vol.7 , pp. 509-517
    • Wintero, A.K.1    Fredholm, M.2    Davies, W.3
  • 31
    • 0347755533 scopus 로고    scopus 로고
    • PEDE (Pig EST Data Explorer): Construction of a database for ESTs derived from porcine full-length cDNA libraries
    • 10.1093/nar/gkh037. 14681463
    • PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. H Uenishi T Eguchi K Suzuki T Sawazaki D Toki H Shinkai,, et al. Nucleic Acids Res 2004 32 484 D488 10.1093/nar/gkh037 14681463
    • (2004) Nucleic Acids Res , vol.32
    • Uenishi, H.1    Eguchi, T.2    Suzuki, K.3    Sawazaki, T.4    Toki, D.5    Shinkai, H.6
  • 32
    • 1842587652 scopus 로고    scopus 로고
    • Development of a porcine brain cDNA library, EST database, and microarray resource
    • 10.1152/physiolgenomics.00099.2003. 14559975
    • Development of a porcine brain cDNA library, EST database, and microarray resource. W Nobis X Ren SP Suchyta TR Suchyta AJ Zanella PM Coussens, Physiol Genomics 2003 16 153 159 10.1152/physiolgenomics.00099.2003 14559975
    • (2003) Physiol Genomics , vol.16 , pp. 153-159
    • Nobis, W.1    Ren, X.2    Suchyta, S.P.3    Suchyta, T.R.4    Zanella, A.J.5    Coussens, P.M.6
  • 33
    • 33645974886 scopus 로고    scopus 로고
    • Generation and analysis of large-scale expressed sequence tags (ESTs) from a full-length enriched cDNA library of porcine backfat tissue
    • 10.1186/1471-2164-7-36. 16504160
    • Generation and analysis of large-scale expressed sequence tags (ESTs) from a full-length enriched cDNA library of porcine backfat tissue. TH Kim NS Kim D Lim KT Lee JH Oh HS Park,, et al. Bmc Genomics 2006 7 36 10.1186/1471-2164-7-36 16504160
    • (2006) Bmc Genomics , vol.7 , pp. 36
    • Kim, T.H.1    Kim, N.S.2    Lim, D.3    Lee, K.T.4    Oh, J.H.5    Park, H.S.6
  • 34
    • 0038617729 scopus 로고    scopus 로고
    • Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
    • 10.1038/ng1159. 12730695
    • Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. B Modrek CJ Lee, Nat Genet 2003 34 177 180 10.1038/ng1159 12730695
    • (2003) Nat Genet , vol.34 , pp. 177-180
    • Modrek, B.1    Lee, C.J.2
  • 36
    • 34247360831 scopus 로고    scopus 로고
    • Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes
    • 10.1261/rna.325107. 17369312
    • Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes. AV Alekseyenko N Kim CJ Lee, RNA 2007 13 661 670 10.1261/rna.325107 17369312
    • (2007) RNA , vol.13 , pp. 661-670
    • Alekseyenko, A.V.1    Kim, N.2    Lee, C.J.3
  • 37
    • 3042540826 scopus 로고    scopus 로고
    • Defining a large set of full-length clones from a Xenopus tropicalis EST project
    • 10.1016/j.ydbio.2004.04.023. 15223350
    • Defining a large set of full-length clones from a Xenopus tropicalis EST project. MJ Gilchrist AM Zorn J Voigt JC Smith N Papalopulu E Amaya, Dev Biol 2004 271 498 516 10.1016/j.ydbio.2004.04.023 15223350
    • (2004) Dev Biol , vol.271 , pp. 498-516
    • Gilchrist, M.J.1    Zorn, A.M.2    Voigt, J.3    Smith, J.C.4    Papalopulu, N.5    Amaya, E.6
  • 38
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • 10547847
    • Primer3 on the WWW for general users and for biologist programmers. S Rozen H Skaletsky, Methods Mol Biol 2000 132 365 386 10547847
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 39
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • 10.1093/nar/gkg595. 12824337
    • Mfold web server for nucleic acid folding and hybridization prediction. M Zuker, Nucleic Acids Res 2003 31 3406 3415 10.1093/nar/gkg595 12824337
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 40
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034 10.1186/gb-2002-3-7-research0034. 12184808
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. J Vandesompele K De Preter F Pattyn B Poppe N Van Roy A De Paepe,, et al. Genome Biol 2002 3 ESEARCH0034 10.1186/gb-2002-3-7-research0034 12184808
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6
  • 41
    • 34948893564 scopus 로고    scopus 로고
    • Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR
    • 10.1186/1471-2199-8-67. 17697375
    • Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR. AB Nygard CB Jorgensen S Cirera M Fredholm, BMC Mol Biol 2007 8 67 10.1186/1471-2199-8-67 17697375
    • (2007) BMC Mol Biol , vol.8 , pp. 67
    • Nygard, A.B.1    Jorgensen, C.B.2    Cirera, S.3    Fredholm, M.4
  • 42
    • 33748799692 scopus 로고    scopus 로고
    • Addressing fluorogenic real-time qPCR inhibition using the novel custom Excel file system 'FocusField2-6GallupqPCRSet-upTool-001' to attain consistently high fidelity qPCR reactions
    • 10.1251/bpo122. 17033699
    • Addressing fluorogenic real-time qPCR inhibition using the novel custom Excel file system 'FocusField2-6GallupqPCRSet-upTool-001' to attain consistently high fidelity qPCR reactions. JM Gallup MR Ackermann, Biol Proced Online 2006 8 87 152 10.1251/bpo122 17033699
    • (2006) Biol Proced Online , vol.8 , pp. 87-152
    • Gallup, J.M.1    Ackermann, M.R.2


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