메뉴 건너뛰기




Volumn 7, Issue , 2006, Pages

Generation and analysis for large-scale expressed sequence tags (ESTs) from a full-length enriched cDNA library of porcine backfat tissue

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; PLASMID DNA;

EID: 33645974886     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-7-36     Document Type: Article
Times cited : (28)

References (51)
  • 1
    • 27744607391 scopus 로고    scopus 로고
    • Genetic parameters for carcass composition and pork quality estimated in a commercial production chain
    • van Wijk HJ, Arts DJ, Matthews JO, Webster M, Ducro BJ, Knol EF: Genetic parameters for carcass composition and pork quality estimated in a commercial production chain. J Anim Sci 2005, 83:324-333.
    • (2005) J Anim Sci , vol.83 , pp. 324-333
    • van Wijk, H.J.1    Arts, D.J.2    Matthews, J.O.3    Webster, M.4    Ducro, B.J.5    Knol, E.F.6
  • 4
    • 0028156647 scopus 로고
    • Cloning and characterization of pig muscle cDNAs by an expressed sequence tag approach
    • Tuggle CK, Schmitz CB: Cloning and characterization of pig muscle cDNAs by an expressed sequence tag approach. Anim Biotechnol 1994, 5:1-13.
    • (1994) Anim Biotechnol , vol.5 , pp. 1-13
    • Tuggle, C.K.1    Schmitz, C.B.2
  • 5
    • 0030188330 scopus 로고    scopus 로고
    • Evaluation and characterization of a porcine small intestine cDNA library: Analysis of 839 clones
    • Wintero AK, Fredholm M, Davies W: Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones. Mamm Genome 1996, 7:509-517.
    • (1996) Mamm Genome , vol.7 , pp. 509-517
    • Wintero, A.K.1    Fredholm, M.2    Davies, W.3
  • 6
    • 0037384774 scopus 로고    scopus 로고
    • Mapping of porcine ESTs obtained from the anterior pituitary
    • Bertani GR, Johnson RK, Robic A, Pomp D: Mapping of porcine ESTs obtained from the anterior pituitary. Anim Genet 2003, 34:132-134.
    • (2003) Anim Genet , vol.34 , pp. 132-134
    • Bertani, G.R.1    Johnson, R.K.2    Robic, A.3    Pomp, D.4
  • 7
    • 1842608975 scopus 로고    scopus 로고
    • Characterization of 298 ESTs from porcine back fat tissue and their assignment to the SSRH radiation hybrid map
    • Mikawa A, Suzuki H, Suzuki K, Toki D, Uenishi H, Awata T, Hamasima N: Characterization of 298 ESTs from porcine back fat tissue and their assignment to the SSRH radiation hybrid map. Mamm Genome 2004, 15:315-322.
    • (2004) Mamm Genome , vol.15 , pp. 315-322
    • Mikawa, A.1    Suzuki, H.2    Suzuki, K.3    Toki, D.4    Uenishi, H.5    Awata, T.6    Hamasima, N.7
  • 9
    • 0035660436 scopus 로고    scopus 로고
    • Application of differential display RT-PCR to identify porcine liver ESTs
    • Ponsuksili S, Wimmers K, Schellander K: Application of differential display RT-PCR to identify porcine liver ESTs. Gene 2001, 280:75-85.
    • (2001) Gene , vol.280 , pp. 75-85
    • Ponsuksili, S.1    Wimmers, K.2    Schellander, K.3
  • 10
    • 0032812471 scopus 로고    scopus 로고
    • Analysis of expressed sequence tags of porcine skeletal muscle
    • Davoli R, Zambonelli P, Bigi D, Fontanesi L, Russo V: Analysis of expressed sequence tags of porcine skeletal muscle. Gene 1999, 233:181-188.
    • (1999) Gene , vol.233 , pp. 181-188
    • Davoli, R.1    Zambonelli, P.2    Bigi, D.3    Fontanesi, L.4    Russo, V.5
  • 12
    • 0036865802 scopus 로고    scopus 로고
    • Generation of expressed sequence tags from a normalized porcine skeletal muscle cDNA library
    • Yao J, Coussens PM, Saama P, Suchyta S, Ernst CW: Generation of expressed sequence tags from a normalized porcine skeletal muscle cDNA library. Anim Biotechnol 2002, 13:211-222.
    • (2002) Anim Biotechnol , vol.13 , pp. 211-222
    • Yao, J.1    Coussens, P.M.2    Saama, P.3    Suchyta, S.4    Ernst, C.W.5
  • 13
    • 0036222178 scopus 로고    scopus 로고
    • Normalized cDNA libraries from a porcine model of orthopedic implant-associated infection
    • Rink A, Santschi EM, Beattie CW: Normalized cDNA libraries from a porcine model of orthopedic implant-associated infection. Mamm Genome 2002, 13:198-205.
    • (2002) Mamm Genome , vol.13 , pp. 198-205
    • Rink, A.1    Santschi, E.M.2    Beattie, C.W.3
  • 16
    • 0037245672 scopus 로고    scopus 로고
    • Generation and sequence characterization of a normalized cDNA library from swine ovarian follicles
    • Caetano AR, Johnson RK, Pomp D: Generation and sequence characterization of a normalized cDNA library from swine ovarian follicles. Mamm Genome 2003, 14:65-70.
    • (2003) Mamm Genome , vol.14 , pp. 65-70
    • Caetano, A.R.1    Johnson, R.K.2    Pomp, D.3
  • 20
    • 1642358496 scopus 로고    scopus 로고
    • Analysis of a full-length cDNA library constructed from swine olfactory bulb for elucidation of expressed genes and their transcription initiation sites
    • Fujisaki S, Sugiyama A, Eguchi T, Watanabe Y, Hiraiwa H, Honma D, Saito T, Yasue H: Analysis of a full-length cDNA library constructed from swine olfactory bulb for elucidation of expressed genes and their transcription initiation sites. J Vet Med Sci 2004, 66:15-23.
    • (2004) J Vet Med Sci , vol.66 , pp. 15-23
    • Fujisaki, S.1    Sugiyama, A.2    Eguchi, T.3    Watanabe, Y.4    Hiraiwa, H.5    Honma, D.6    Saito, T.7    Yasue, H.8
  • 21
    • 1642460155 scopus 로고    scopus 로고
    • An improved method for constructing a full-length enriched cDNA library using small amounts of total RNA as a starting material
    • Oh JH, Kim YS, Kim NS: An improved method for constructing a full-length enriched cDNA library using small amounts of total RNA as a starting material. Exp Mol Med 2003, 35:586-590.
    • (2003) Exp Mol Med , vol.35 , pp. 586-590
    • Oh, J.H.1    Kim, Y.S.2    Kim, N.S.3
  • 22
    • 0028213438 scopus 로고
    • Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides
    • Maruyama K, Sugano S: Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. Gene 1994, 138:171-174.
    • (1994) Gene , vol.138 , pp. 171-174
    • Maruyama, K.1    Sugano, S.2
  • 23
    • 1942519200 scopus 로고    scopus 로고
    • Construction of multipurpose vectors, pCNS and pCNS-D2, are suitable for collection and functional study of large-scale cDNAs
    • Oh JH, Sohn HY, Kim JM, Kim YS, Kim NS: Construction of multipurpose vectors, pCNS and pCNS-D2, are suitable for collection and functional study of large-scale cDNAs. Plasmid 2004, 51:217-226.
    • (2004) Plasmid , vol.51 , pp. 217-226
    • Oh, J.H.1    Sohn, H.Y.2    Kim, J.M.3    Kim, Y.S.4    Kim, N.S.5
  • 25
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P: Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 1998, 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 26
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A: CAP3: A DNA sequence assembly program. Genome Res 1999, 9:868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 27
    • 21844473579 scopus 로고    scopus 로고
    • GoSurfer: A Graphical Interactive Tool For Comparative Analysis of Large Gene Sets in Gene Ontologytrade mark Space
    • Zhong S, Storch KF, Lipan O, Kao MC, Weitz CJ, Wong WH: GoSurfer: A Graphical Interactive Tool For Comparative Analysis of Large Gene Sets in Gene Ontologytrade mark Space. Appl Bioinformatics 2004, 3:261-264.
    • (2004) Appl Bioinformatics , vol.3 , pp. 261-264
    • Zhong, S.1    Storch, K.F.2    Lipan, O.3    Kao, M.C.4    Weitz, C.J.5    Wong, W.H.6
  • 28
    • 0002303087 scopus 로고
    • Teoria statistica delle classi e calcolo delle probabilit?
    • Pubblicazioni del R Istituto Superiore di Scienze Economiche e Commerciali di Firenze
    • Bonferroni CE: Teoria statistica delle classi e calcolo delle probabilit? Volume B. Pubblicazioni del R Istituto Superiore di Scienze Economiche e Commerciali di Firenze; 1936:3-62.
    • (1936) , vol.8 , pp. 3-62
    • Bonferroni, C.E.1
  • 29
    • 0033965855 scopus 로고    scopus 로고
    • The TIGR gene indices: Reconstruction and representation of expressed gene sequences
    • Quackenbush J, Liang F, Holt I, Pertea G, Upton J: The TIGR gene indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Res 2000, 26:141-145.
    • (2000) Nucleic Acids Res , vol.26 , pp. 141-145
    • Quackenbush, J.1    Liang, F.2    Holt, I.3    Pertea, G.4    Upton, J.5
  • 30
    • 0035260692 scopus 로고    scopus 로고
    • Genetic dissection of phenotypic diversity in farm animals
    • Anderson L: Genetic dissection of phenotypic diversity in farm animals. Nature Genet 2001, 2:130-138.
    • (2001) Nature Genet , vol.2 , pp. 130-138
    • Anderson, L.1
  • 31
    • 0037069380 scopus 로고    scopus 로고
    • Combining mapping and arraying: An approach to candidate gene identification
    • Wayne ML, McIntyre LM: Combining mapping and arraying: An approach to candidate gene identification. Proc Natl Acad Sci USA 2002, 99:14903-14906.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 14903-14906
    • Wayne, M.L.1    McIntyre, L.M.2
  • 32
    • 0030775263 scopus 로고    scopus 로고
    • Construction and characterization of a full length-enriched and a 5′-end-enriched cDNA library
    • Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S: Construction and characterization of a full length-enriched and a 5′-end-enriched cDNA library. Gene 1997, 200:149-156.
    • (1997) Gene , vol.200 , pp. 149-156
    • Suzuki, Y.1    Yoshitomo-Nakagawa, K.2    Maruyama, K.3    Suyama, A.4    Sugano, S.5
  • 34
    • 0029030491 scopus 로고
    • An efficient strategy to isolate full-length cDNAs based on an mRNA cap retention procedure (CAPture)
    • Edery I, Chu LL, Sonenberg N, Pelletier J: An efficient strategy to isolate full-length cDNAs based on an mRNA cap retention procedure (CAPture). Mol Cell Biol 1995, 15:3363-3371.
    • (1995) Mol Cell Biol , vol.15 , pp. 3363-3371
    • Edery, I.1    Chu, L.L.2    Sonenberg, N.3    Pelletier, J.4
  • 37
    • 0035223303 scopus 로고    scopus 로고
    • Construction of a full-length enriched cDNA libraries. The oligo-capping method
    • Suzuki Y, Sugano, S: Construction of a full-length enriched cDNA libraries. The oligo-capping method. Methods Mol Biol 2001, 175:143-153.
    • (2001) Methods Mol Biol , vol.175 , pp. 143-153
    • Suzuki, Y.1    Sugano, S.2
  • 41
    • 1842676486 scopus 로고    scopus 로고
    • Complementary DNA macroarray analyses of differential gene expression in porcine fetal and postnatal muscle
    • Zhao SH, Nettleton D, Liu W, Fitzsimmons C, Ernst CW, Raney NE, Tuggle CK: Complementary DNA macroarray analyses of differential gene expression in porcine fetal and postnatal muscle. J Anim Sci 2003, 81:2179-2188.
    • (2003) J Anim Sci , vol.81 , pp. 2179-2188
    • Zhao, S.H.1    Nettleton, D.2    Liu, W.3    Fitzsimmons, C.4    Ernst, C.W.5    Raney, N.E.6    Tuggle, C.K.7
  • 42
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM: The significance of digital gene expression profiles. Genome Res 1997, 7:986-995.
    • (1997) Genome Res , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 43
    • 0034518635 scopus 로고    scopus 로고
    • The comparison of gene expression from multiple cDNA libraries
    • Stekel DJ, Git Y, Falciani F: The comparison of gene expression from multiple cDNA libraries. Genome Res 2000, 10:2055-2061.
    • (2000) Genome Res , vol.10 , pp. 2055-2061
    • Stekel, D.J.1    Git, Y.2    Falciani, F.3
  • 44
    • 3042694499 scopus 로고    scopus 로고
    • Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina
    • Yu J, Farjo R, MacNee SP, Baehr W, Stambolian DE, Swaroop A: Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina. Genome Biol 2003, 4:R65.
    • (2003) Genome Biol , vol.4
    • Yu, J.1    Farjo, R.2    MacNee, S.P.3    Baehr, W.4    Stambolian, D.E.5    Swaroop, A.6
  • 45
    • 9144245740 scopus 로고    scopus 로고
    • Development of a porcine skeletal muscle cDNA microarray: Analysis of differential transcript expression in phenotypically distinct muscles
    • Bai Q, McGillivray C, da Costa N, Doman S, Evans G, Stear MJ, Chang KC: Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles. BMC Genomics 2003, 4:8.
    • (2003) BMC Genomics , vol.4 , pp. 8
    • Bai, Q.1    McGillivray, C.2    da Costa, N.3    Doman, S.4    Evans, G.5    Stear, M.J.6    Chang, K.C.7
  • 46
    • 16244375554 scopus 로고    scopus 로고
    • Development of a porcine small intestinal cDNA microarray: Characterization and functional analysis of the response to enterotoxigenic E. coli. Vet
    • Niewold TA, Kerstens HH, vander Meulen J, Smits MA, Hulst MM: Development of a porcine small intestinal cDNA microarray: characterization and functional analysis of the response to enterotoxigenic E. coli. Vet. Immunol Immunopathol 2005, 105:317-329.
    • (2005) Immunol Immunopathol , vol.105 , pp. 317-329
    • Niewold, T.A.1    Kerstens, H.H.2    vander Meulen, J.3    Smits, M.A.4    Hulst, M.M.5
  • 47
    • 10844222494 scopus 로고    scopus 로고
    • Microarray profiling for differential gene expression in ovaries and ovarian follicles of pigs selected for increased ovulation rate
    • Caetano AR, Johnson RK, Ford JJ, Pomp D: Microarray profiling for differential gene expression in ovaries and ovarian follicles of pigs selected for increased ovulation rate. Genetics 2004, 168:1529-1537.
    • (2004) Genetics , vol.168 , pp. 1529-1537
    • Caetano, A.R.1    Johnson, R.K.2    Ford, J.J.3    Pomp, D.4
  • 51
    • 84873055661 scopus 로고    scopus 로고
    • QTL database
    • QTL database [http://www.animalgenome.org]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.