E(y)2/Sus1 is required for blocking PRE silencing by the Wari insulator in Drosophila melanogaster

Chromosoma

Volumn 119, Issue 3, 2010, Pages 243-253

  Erokhin, Maksim ^a   Parshikov, Alexander ^a   Georgiev, Pavel ^a   Chetverina, Darya ^a  

^a INSTITUTE OF GENE BIOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; DNA BINDING PROTEIN; PROTEIN CP190; PROTEIN E(Y)2; PROTEIN SU(HW); UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; DNA RESPONSIVE ELEMENT; DROSOPHILA MELANOGASTER; EMBRYO; GENE SILENCING; INSULATOR ELEMENT; MUTATION; NONHUMAN; POLYCOMB RESPONSE ELEMENT; PROTEIN DNA BINDING; PROTEIN FUNCTION;

ANIMALS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; GENE EXPRESSION REGULATION; GENE SILENCING; INSULATOR ELEMENTS; PROTEIN BINDING; RESPONSE ELEMENTS; TRANSCRIPTION FACTORS;

DROSOPHILA MELANOGASTER;

EID: 77953229944     PISSN: 00095915     EISSN: 14320886     Source Type: Journal    
DOI: 10.1007/s00412-009-0253-1     Document Type: Article

References (70)

1. B Adryan G Woerfel I Birch-Machin S Gao M Quick L Meadows S Russell R White 2007 Genomic mapping of suppressor of Hairy-wing binding sites in Drosophila Genome Biol 8 R167 10.1186/gb-2007-8-8-r167 17705839 (Pubitemid 351891470)
2. M Bartkuhn T Straub M Herold M Herrmann C Rathke H Saumweber GD Gilfillan PB Becker R Renkawitz 2009 Active promoters and insulators are marked by the centrosomal protein 190 EMBO J 28 877 888 10.1038/emboj.2009.34 1:CAS:528:DC%2BD1MXitFKlsbw%3D 19229299
3. E Brasset C Vaury 2005 Insulators are fundamental components of the eukaryotic genomes Heredity 94 571 576 10.1038/sj.hdy.6800669 1:CAS:528:DC%2BD2MXkvVShsL8%3D 15815711 (Pubitemid 40816990)
4. AM Bushey E Ramos VG Corces 2009 Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions Genes Dev 23 1338 1350 10.1101/gad.1798209 1:CAS:528:DC%2BD1MXntlegtr4%3D 19443682
5. RD Butcher S Chodagam R Basto JG Wakefield DS Henderson JW Raff WG Whitfield 2004 The Drosophila centrosome-associated protein CP190 is essential for viability but not for cell division J Cell Sci 117 1191 1199 10.1242/jcs.00979 1:CAS:528:DC%2BD2cXjsVyqs7s%3D 14996941 (Pubitemid 38456100)
6. HN Cai M Levine 1995 Modulation of enhancer-promoter interactions by insulators in the Drosophila embryo Nature 376 533 536 10.1038/376533a0 1:CAS:528:DyaK2MXnsVCrsb8%3D 7637789
7. M Capelson VG Corces 2004 Boundary elements and nuclear organization Biol Cell 96 617 629 10.1016/j.biolcel.2004.06.004 1:CAS:528:DC%2BD2cXptFOmu70%3D 15519696 (Pubitemid 39562236)
8. CS Chan L Rastelli V Pirrotta 1994 A Polycomb response element in the Ubx gene that determines an epigenetically inherited state of repression EMBO J 13 2553 2564 1:CAS:528:DyaK2cXltVWisr4%3D 7912192
9. D Chetverina E Savitskaya O Maksimenko L Melnikova O Zaytseva A Parshikov AV Galkin P Georgiev 2008 Red flag on the white reporter: a versatile insulator abuts the white gene in Drosophila and is omnipresent in mini-white constructs Nucleic Acids Res 36 926 937
10. D Ciavatta S Rogers T Magnuson 2007 Drosophila CTCF is required for Fab-8 enhancer blocking activity in S2 cells J Mol Biol 373 233 239 10.1016/j.jmb.2007.07.065 1:CAS:528:DC%2BD2sXhtFSksrnN 17825318 (Pubitemid 47445572)
11. I Comet E Savitskaya B Schuettengruber N Negre S Lavrov A Parshikov F Juge E Gracheva P Georgiev G Cavalli 2006 PRE-mediated bypass of two Su(Hw) insulators targets PcG proteins to a downstream promoter Dev Cell 11 1 8 10.1016/j.devcel.2006.05.009 (Pubitemid 43960801)
12. J Déjardin A Rappailles O Cuvier C Grimaud M Decoville D Locker G Cavalli 2005 Recruitment of Drosophila Polycomb group proteins to chromatin by DSP1 Nature 434 533 538 10.1038/nature03386 15791260 (Pubitemid 40477064)
13. M Dunaway JY Hwang M Xiong HL Yuen 1997 The activity of the scs and scs insulator elements is not dependent on chromosomal context Mol Cell Biol 17 182 189 1:CAS:528:DyaK2sXhtlejtg%3D%3D 8972198
14. T Fischer S Rodríguez-Navarro G Pereira A Rácz E Schiebel E Hurt 2004 Yeast centrin Cdc31 is linked to the nuclear mRNA export machinery Nat Cell Biol 6 840 848 10.1038/ncb1163 1:CAS:528:DC%2BD2cXntFCmsrY%3D 15311284 (Pubitemid 39207249)
15. M Gaszner G Felsenfeld 2006 Insulators: exploiting transcriptional and epigenetic mechanisms Nature Rev Genet 7 703 713 10.1038/nrg1925 1:CAS:528:DC%2BD28Xot1Ggurg%3D 16909129 (Pubitemid 44260006)
16. M Gaszner J Vazquez P Schedl 1999 The Zw5 protein, a component of the scs chromatin domain boundary, is able to block enhancer-promoter interaction Genes Dev 13 2098 2107 10.1101/gad.13.16.2098 1:CAS:528:DyaK1MXmtValsb4%3D 10465787
17. PG Georgiev 1994 Identification of mutations in three genes that interact with zeste in the control of white gene expression in Drosophila melanogaster Genetics 138 733 739 1:CAS:528:DyaK28XitlKitg%3D%3D 7851770
18. P Georgiev M Kozycina 1996 Interaction between mutations in the suppressor of Hairy wing and modifier of mdg4 genes of Drosophila melanogaster affecting the phenotype of gypsy-induced mutations Genetics 142 425 436 1:CAS:528:DyaK28XhsFKjsr0%3D 8852842
19. S Georgieva E Nabirochkina FJ Dilworth H Eickhoff P Becker L Tora P Georgiev A Soldatov 2001 The novel transcription factor e(y)2 interacts with TAF(II)40 and potentiates transcription activation on chromatin templates Mol Cell Biol 21 5223 5231 10.1128/MCB.21.15.5223-5231.2001 1:CAS:528: DC%2BD3MXlsVGitbk%3D 11438676 (Pubitemid 32656417)
20. TI Gerasimova DA Gdula DV Gerasimov O Simonova VG Corces 1995 A Drosophila protein that imparts directionality on a chromatin insulator is an enhancer of position-effect variegation Cell 82 58 597 10.1016/0092-8674(95) 90031-4
21. TI Gerasimova EP Lei AM Bushey VG Corces 2007 Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila Mol Cell 28 761 772 10.1016/j.molcel.2007.09.024 1:CAS:528:DC%2BD1cXktVWitA%3D%3D 18082602 (Pubitemid 350217054)
22. PK Geyer VG Corces 1987 Separate regulatory elements are responsible for the complex pattern of tissue-specific and developmental transcription of the yellow locus in Drosophila melanogaster Genes Dev 1 996 1004 10.1101/gad.1.9.996 1:CAS:528:DyaL1cXmvF2ntQ%3D%3D 3123324
23. PK Geyer VG Corces 1992 DNA position-specific repression of transcription by a Drosophila zinc finger protein Genes Dev 6 1865 1873 10.1101/gad.6.10.1865 1:CAS:528:DyaK3sXktF2g 1327958
24. KG Golic S Lindquist 1989 The FLP recombinase of yeast catalyzes site-specific recombination in the Drosophila genome Cell 59 499 509 10.1016/0092-8674(89)90033-0 1:CAS:528:DyaK3cXhslWlug%3D%3D 2509077 (Pubitemid 19284463)
25. A Golovnin I Birukova O Romanova M Silicheva A Parshikov E Savitskaya V Pirrotta P Georgiev 2003 An endogenous Su(Hw) insulator separates the yellow gene from the Achaete-scute gene complex in Drosophila Development 130 3249 3258 10.1242/dev.00543 1:CAS:528:DC%2BD3sXlvF2gtLc%3D 12783795
26. A Golovnin L Melnikova I Volkov M Kostuchenko AV Galkin P Georgiev 2008 'Insulator bodies' are aggregates of proteins but not of insulators EMBO Rep 9 440 445 10.1038/embor.2008.32 1:CAS:528:DC%2BD1cXltlSnsr4%3D 18369369 (Pubitemid 351627281)
27. S Guelman T Suganuma L Florens V Weake SK Swanson MP Washburn SM Abmayr JL Wokrman 2006 The essential gene wda encodes a WD40 repeat subunit of Drosophila SAGA required for histone H3 acetylation Mol Cell Biol 26 7178 7189 10.1128/MCB.00130-06 1:CAS:528:DC%2BD28XhtVCltbbL 16980620 (Pubitemid 44477694)
28. H Gyurkovics J Gausz J Kummer F Karch 1990 A new homeotic mutation in the Drosophila bithorax complex removes a boundary separating two domains of regulation EMBO J 9 2579 2585 1:CAS:528:DyaK3cXkvFalt7s%3D 1973385
29. CM Hart K Zhao UK Laemmli 1997 The scs boundary element: Characterization of boundary element-associated factors Mol Cell Biol 17 999 1009 1:CAS:528:DyaK2sXmvV2lsA%3D%3D 9001253
30. C Holdridge D Dorsett 1991 Repression of hsp70 heat shock gene transcription by the suppressor of Hairy-wing protein of Drosophila melanogaster Mol Cell Biol 11 1894 1900 1:CAS:528:DyaK3MXhsl2mu7o%3D 1900919
31. EE Holohan C Kwong B Adryan M Herold R Renkawitz S Russell R White 2007 CTCF genomic binding sites in Drosophila and the organization of the bithorax complex PLoS Genet 3 e112 10.1371/journal.pgen.0030112 17616980 (Pubitemid 47203971)
32. S Huang X Li TM Yusufzai Y Qiu G Felsenfeld 2007 USF1 recruits histone modification complexes and is critical for maintenance of a chromatin barrier Mol Cell Biol 27 7991 8002 10.1128/MCB.01326-07 1:CAS:528:DC%2BD2sXhtlWmsrjF 17846119 (Pubitemid 350086431)
33. RE Karess GM Rubin 1984 Analysis of P transposable element functions in Drosophila Cell 38 135 146 10.1016/0092-8674(84)90534-8 1:CAS:528: DyaL2cXlsVCqtr4%3D 6088058
34. R Kellum P Schedl 1991 A position-effect assay for boundaries of higher order chromosomal domains Cell 64 941 950 10.1016/0092-8674(91)90318-S 1:CAS:528:DyaK3MXhsl2lu7c%3D 1848159
35. R Kellum P Schedl 1992 A group of scs elements function as domain boundaries in an enhancer-blocking assay Mol Cell Biol 12 2424 2431 1:CAS:528:DyaK38XisV2mu7o%3D 1569958
36. AN Krasnov MM Kurshakova VE Ramensky PV Mardanov EN Nabirochkina SG Georgieva 2005 A retrocopy of a gene can functionally displace the source gene in evolution Nucleic Acids Res 33 6654 6661 10.1093/nar/gki969 1:CAS:528:DC%2BD2MXhtlSjurfP 16314324 (Pubitemid 41806430)
37. EJ Kuhn PK Geyer 2003 Genomic insulators: connecting properties to mechanism Curr Opin Cell Biol 15 259 265 10.1016/S0955-0674(03)00039-5 1:CAS:528:DC%2BD3sXkt1Kgu7c%3D 12787766 (Pubitemid 36638642)
38. EJ Kuhn CM Hart PK Geyer 2004 Studies of the role of the Drosophila scs and scs insulators in defining boundaries of a chromosome puff Mol Cell Biol 24 1470 1480 10.1128/MCB.24.4.1470-1480.2004 1:CAS:528:DC%2BD2cXhtFOjsLY%3D 14749365 (Pubitemid 38167071)
39. EJ Kuhn-Parnell C Helou DJ Marion BL Gilmore TJ Parnell MS Wold PK Geyer 2008 Investigation of the properties of non-gypsy suppressor of Hairy-wing-binding sites Genetics 179 1263 1273 10.1534/genetics.108.087254 1:CAS:528:DC%2BD1cXhtVCqtrbL 18562648
40. MM Kurshakova AN Krasnov DV Kopytova YV Shidlovskii JV Nikolenko EN Nabirochkina D Spehner P Schultz L Tora SG Georgieva 2007 SAGA and a novel Drosophila export complex anchor efficient transcription and mRNA export to NPC EMBO J 26 4956 4965 10.1038/sj.emboj.7601901 1:CAS:528:DC%2BD2sXhsVWgsr%2FI 18034162 (Pubitemid 350261274)
41. M Kurshakova O Maksimenko A Golovnin M Pulina S Georgieva P Georgiev A Krasnov 2007 Evolutionarily conserved E(y)2/Sus1 protein is essential for the barrier activity of Su(Hw)-dependent insulators in Drosophila Mol Cell 27 332 338 10.1016/j.molcel.2007.05.035 1:CAS:528:DC%2BD2sXovFamtbk%3D 17643381 (Pubitemid 47058301)
42. RK Maeda F Karch 2007 Making connections: boundaries and insulators in Drosophila Curr Opin Genet Dev 17 394 399 10.1016/j.gde.2007.08.002 1:CAS:528:DC%2BD2sXht1Kku7zJ 17904351 (Pubitemid 350016895)
43. OG Maksimenko DA Chetverina PG Georgiev 2006 Insulators of higher eukaryotes: properties, mechanisms of action, and role in transcription regulation Genetika 42 1029 1044 1:STN:280:DC%2BD28rptl2jsw%3D%3D 17025153
44. DR Mallin JS Myung JS Patton PK Geyer 1998 Polycomb group repression is blocked by the Drosophila suppressor of Hairy-wing [su(Hw)] insulator Genetics 148 331 339 1:CAS:528:DyaK1cXovF2rtQ%3D%3D 9475743
45. M Martin YB Meng W Chia 1989 Regulatory elements involved in the tissue-specific expression of the yellow gene of Drosophila Mol Gen Genet 218 118 126 10.1007/BF00330574 1:CAS:528:DyaL1MXlsVOktro%3D 2550760
46. J Mateos-Langerak G Cavalli 2008 Polycomb group proteins and long-range gene regulation Adv Genet 61 45 66 10.1016/S0065-2660(07)00002-8 1:CAS:528:DC%2BD1cXmtF2ju7s%3D 18282502
47. M Mohan M Bartkuhn M Herold A Philippen N Heinl I Bardenhagen J Leers RA White R Renkawitz-Pohl H Saumweber R Renkawitz 2007 The Drosophila insulator proteins CTCF and CP190 link enhancer blocking to body patterning EMBO J 26 4203 4214 10.1038/sj.emboj.7601851 1:CAS:528:DC%2BD2sXhtFWiu73K 17805343 (Pubitemid 47525162)
48. H Moon G Filippova D Loukinov E Pugacheva Q Chen ST Smith A Munhall B Grewe M Bartkuhn R Arnold LJ Burke R Renkawitz-Pohl R Ohlsson J Zhou R Renkawitz V Lobanenkov 2005 CTCF is conserved from Drosophila to humans and confers enhancer blocking of the Fab-8 insulator EMBO Rep 6 165 170 10.1038/sj.embor. 7400334 1:CAS:528:DC%2BD2MXpt1aitw%3D%3D 15678159 (Pubitemid 40309414)
49. N Nègre J Hennetin LV Sun S Lavrov M Bellis KP White G Cavalli 2006 Chromosomal distribution of PcG proteins during Drosophila development PLoS Biol 4 e170 10.1371/journal.pbio.0040170 16613483
50. CY Pai EP Lei D Ghosh VG Corces 2004 The centrosomal protein CP190 is a component of the gypsy chromatin insulator Mol Cell 16 737 748 10.1016/j.molcel.2004.11.004 1:CAS:528:DC%2BD2cXhtFaku7zO 15574329 (Pubitemid 39586532)
51. TJ Parnell MM Viering A Skjesol C Helou EJ Kuhn PK Geyer 2003 An endogenous suppressor of Hairy-wing insulator separates regulatory domains in Drosophila Proc Natl Acad Sci USA 100 13436 13441 10.1073/pnas.2333111100 1:CAS:528:DC%2BD3sXptFOisbY%3D 14597701 (Pubitemid 37444760)
52. TJ Parnell EJ Kuhn B Gilmor C Helou M Wold PK Geyer 2006 Identification of genomic sites that bind the Drosophila suppressor of Hairy-wing insulator protein Mol Cell Biol 26 5983 5993 10.1128/MCB.00698-06 1:CAS:528: DC%2BD28Xot1yltr0%3D 16880510 (Pubitemid 44204518)
53. P Pascual-García CK Govind E Queralt B Cuenca-Bono A Llopis S Chavez AG Hinnebusch S Rodríguez-Navarro 2008 Sus1 is recruited to coding regions and functions during transcription elongation in association with SAGA and TREX2 Genes Dev 22 2811 2822 10.1101/gad.483308 18923079
54. E Ramos D Ghosh E Baxter VG Corces 2006 Genomic organization of gypsy chromatin insulators in Drosophila melanogaster Genetics 172 2337 2349 10.1534/genetics.105.054742 1:CAS:528:DC%2BD28XkvFOgtrs%3D 16452134
55. L Ringrose R Paro 2007 Polycomb/Trithorax response elements and epigenetic memory of cell identity Development 134 223 232 10.1242/dev.02723 1:CAS:528:DC%2BD2sXhvFGms7c%3D 17185323
56. S Rodríguez-Navarro T Fischer MJ Luo O Antúnez S Brettschneider J Lechner JE Pérez-Ortín R Reed E Hurt 2004 Sus1, a functional component of the SAGA histone acetylase complex and the nuclear pore-associated mRNA export machinery Cell 116 75 86 10.1016/S0092-8674(03) 01025-0 14718168 (Pubitemid 38156185)
57. GM Rubin AC Spradling 1982 Genetic transformation of Drosophila with transposable element vectors Science 218 348 353 10.1126/science.6289436 1:CAS:528:DyaL3sXhtFOj 6289436
58. YB Schwartz V Pirrotta 2007 Polycomb silencing mechanisms and the management of genomic programs Nature Rev Genet 8 9 22 10.1038/nrg1981 1:CAS:528:DC%2BD28Xhtlakt7fM 17173055 (Pubitemid 46006046)
59. KS Scott PK Geyer 1995 Effects of the su(Hw) insulator protein on the expression of the divergently transcribed Drosophila yolk protein genes EMBO J 14 6258 6267 1:CAS:528:DyaK28XjtVKhsA%3D%3D 8557045
60. ML Siegal DL Hartl 2000 Application of Cre/loxP in Drosophila. Site-specific recombination and transgene co-placement Methods Mol Biol 136 487 495 1:CAS:528:DC%2BD3cXktlWlsrY%3D 10840736
61. CJ Sigrist V Pirrotta 1997 Chromatin insulator elements block the silencing of a target gene by the Drosophila polycomb response element (PRE) but allow trans interactions between PREs on different chromosomes Genetics 147 209 221 1:CAS:528:DyaK2sXlvFarsrg%3D 9286681
62. AC Spradling GM Rubin 1982 Transposition of cloned P elements into Drosophila germ line chromosomes Science 218 341 347 10.1126/science.6289435 1:CAS:528:DyaL3sXhtVOg 6289435
63. FL Sun SC Elgin 1999 Putting boundaries on silence Cell 99 459 462 10.1016/S0092-8674(00)81534-2 1:CAS:528:DyaK1MXnvVSis7k%3D 10589674
64. A Udvardy E Maine P Schedl 1985 The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains J Mol Biol 185 341 358 10.1016/0022-2836(85) 90408-5 1:CAS:528:DyaL2MXlslegsrw%3D 2997449 (Pubitemid 16250035)
65. L Valenzuela RT Kamakaka 2006 Chromatin insulators Annu Rev Genet 40 107 138 10.1146/annurev.genet.39.073003.113546 1:CAS:528:DC%2BD2sXnslKg 16953792 (Pubitemid 44956781)
66. J Vazquez P Schedl 1994 Sequences required for enhancer blocking activity of scs are located within two nuclease-hypersensitive regions EMBO J 13 5984 5993 1:CAS:528:DyaK2MXivFKgtb8%3D 7813436
67. JA Wallace G Felsenfeld 2007 We gather together: insulators and genome organization Curr Opin Genet Dev 17 400 407 10.1016/j.gde.2007.08.005 1:CAS:528:DC%2BD2sXht1Kku7zE 17913488 (Pubitemid 350016897)
68. AG West S Huang M Gaszner MD Litt G Felsenfeld 2004 Recruitment of histone modifications by USF proteins at a vertebrate barrier element Mol Cell 16 453 463 10.1016/j.molcel.2004.10.005 1:CAS:528:DC%2BD2cXhtVWhtr%2FK 15525517 (Pubitemid 39504798)
69. H Zhao A Dean 2005 Organizing the genome: enhancers and insulators Biochem Cell Biol 83 516 524 10.1139/o05-054 1:CAS:528:DC%2BD2MXhtVGlsbjN 16094455 (Pubitemid 41626770)
70. K Zhao CM Hart UK Laemmli 1995 Visualization of chromosomal domains with boundary element-associated factor BEAF-32 Cell 81 879 889 10.1016/0092-8674(95) 90008-X 1:CAS:528:DyaK2MXmsVagtrk%3D 7781065