메뉴 건너뛰기




Volumn 28, Issue 6, 2010, Pages 308-316

Exploiting the ecogenomics toolbox for environmental diagnostics of organohalide-respiring bacteria

Author keywords

[No Author keywords available]

Indexed keywords

ANAEROBIC ENVIRONMENT; ECOSYSTEM LEVELS; ENVIRONMENTAL PROBING; ENVIRONMENTAL SCIENCE; EVOLUTIONARY PROCESS; FUNCTIONAL BIODIVERSITY; GENOMICS; HIGH-THROUGHPUT METHOD; IN-SITU; MOLECULAR LEVELS; PROTEIN LEVEL;

EID: 77953121577     PISSN: 01677799     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tibtech.2010.03.005     Document Type: Review
Times cited : (138)

References (73)
  • 1
    • 84950129530 scopus 로고    scopus 로고
    • Bioaugmentation for remediation of chlorinated solvents: technology development, status, and research needs
    • GeoSyntec, C. (2005) Bioaugmentation for remediation of chlorinated solvents: technology development, status, and research needs. Environmental Security Technology Certification Program (ESTCP), 122.
    • (2005) Environmental Security Technology Certification Program (ESTCP) , pp. 122
    • GeoSyntec, C.1
  • 2
    • 48349107135 scopus 로고    scopus 로고
    • Dioxin- and POP-contaminated sites-contemporary and future relevance and challenges
    • Weber R., et al. Dioxin- and POP-contaminated sites-contemporary and future relevance and challenges. Environ. Sci. Pollut. Res. Int. 2008, 15:363-393.
    • (2008) Environ. Sci. Pollut. Res. Int. , vol.15 , pp. 363-393
    • Weber, R.1
  • 3
    • 73649122427 scopus 로고    scopus 로고
    • Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides
    • McMurdie P.J., et al. Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet. 2009, 5:e1000714.
    • (2009) PLoS Genet. , vol.5
    • McMurdie, P.J.1
  • 4
    • 34948844066 scopus 로고    scopus 로고
    • Reductive dechlorination of chloroethenes by Dehalococcoides-containing cultures enriched from a polychlorinated-dioxin-contaminated microcosm
    • Futamata H., et al. Reductive dechlorination of chloroethenes by Dehalococcoides-containing cultures enriched from a polychlorinated-dioxin-contaminated microcosm. ISME J. 2007, 1:471-479.
    • (2007) ISME J. , vol.1 , pp. 471-479
    • Futamata, H.1
  • 5
    • 67649603398 scopus 로고    scopus 로고
    • Biodiversity of dehalorespiring bacteria with special emphasis on polychlorinated biphenyl/dioxin dechlorinators
    • Hiraishi A. Biodiversity of dehalorespiring bacteria with special emphasis on polychlorinated biphenyl/dioxin dechlorinators. Microbes Environ. 2008, 23:1-12.
    • (2008) Microbes Environ. , vol.23 , pp. 1-12
    • Hiraishi, A.1
  • 6
    • 33744930596 scopus 로고    scopus 로고
    • Harnessing microbial activities for environmental cleanup
    • Löffler F.E., Edwards E.A. Harnessing microbial activities for environmental cleanup. Curr. Opin. Biotechnol. 2006, 17:274-284.
    • (2006) Curr. Opin. Biotechnol. , vol.17 , pp. 274-284
    • Löffler, F.E.1    Edwards, E.A.2
  • 7
    • 27144500225 scopus 로고    scopus 로고
    • Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1
    • Kube M., et al. Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1. Nat. Biotechnol. 2005, 23:1269-1273.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 1269-1273
    • Kube, M.1
  • 8
    • 33845644147 scopus 로고    scopus 로고
    • An ecologist's guide to ecogenomics
    • Ouborg N.J., Vriezen W.H. An ecologist's guide to ecogenomics. J. Ecol. 2007, 95:8-16.
    • (2007) J. Ecol. , vol.95 , pp. 8-16
    • Ouborg, N.J.1    Vriezen, W.H.2
  • 9
    • 34248179977 scopus 로고    scopus 로고
    • Unravelling microbial communities with DNA-microarrays: challenges and future directions
    • Wagner M., et al. Unravelling microbial communities with DNA-microarrays: challenges and future directions. Microb. Ecol. 2007, 53:498-506.
    • (2007) Microb. Ecol. , vol.53 , pp. 498-506
    • Wagner, M.1
  • 10
    • 19944426081 scopus 로고    scopus 로고
    • Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
    • Seshadri R., et al. Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science 2005, 307:105.
    • (2005) Science , vol.307 , pp. 105
    • Seshadri, R.1
  • 11
    • 57049091573 scopus 로고    scopus 로고
    • Systems biology approaches to bioremediation
    • de Lorenzo V. Systems biology approaches to bioremediation. Curr. Opin. Biotechnol. 2008, 19:579-589.
    • (2008) Curr. Opin. Biotechnol. , vol.19 , pp. 579-589
    • de Lorenzo, V.1
  • 12
    • 33645573753 scopus 로고    scopus 로고
    • Transcriptomics, proteomics and interactomics: unique approaches to track the insights of bioremediation
    • Singh O.V., Nagaraj N.S. Transcriptomics, proteomics and interactomics: unique approaches to track the insights of bioremediation. Brief. Funct. Genomic. Proteomic. 2006, 4:355-362.
    • (2006) Brief. Funct. Genomic. Proteomic. , vol.4 , pp. 355-362
    • Singh, O.V.1    Nagaraj, N.S.2
  • 13
    • 3342951235 scopus 로고    scopus 로고
    • Genomics for the ecological toolbox
    • Thomas M.A., Klaper R. Genomics for the ecological toolbox. Trends Ecol. Evol. 2004, 19:439-445.
    • (2004) Trends Ecol. Evol. , vol.19 , pp. 439-445
    • Thomas, M.A.1    Klaper, R.2
  • 14
    • 47749126600 scopus 로고    scopus 로고
    • The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the Delta-Proteobacteria
    • Thomas S.H., et al. The mosaic genome of Anaeromyxobacter dehalogenans strain 2CP-C suggests an aerobic common ancestor to the Delta-Proteobacteria. PLoS ONE 2008, 3:e2103.
    • (2008) PLoS ONE , vol.3
    • Thomas, S.H.1
  • 15
    • 33644854231 scopus 로고    scopus 로고
    • Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195
    • Nonaka H., et al. Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195. J. Bacteriol. 2006, 188:2262.
    • (2006) J. Bacteriol. , vol.188 , pp. 2262
    • Nonaka, H.1
  • 16
    • 33746919911 scopus 로고    scopus 로고
    • The Desulfitobacterium genus
    • Villemur R., et al. The Desulfitobacterium genus. FEMS Microbiol. Rev. 2006, 30:706-733.
    • (2006) FEMS Microbiol. Rev. , vol.30 , pp. 706-733
    • Villemur, R.1
  • 17
    • 0038264087 scopus 로고    scopus 로고
    • Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium
    • He J., et al. Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium. Nature 2003, 424:62.
    • (2003) Nature , vol.424 , pp. 62
    • He, J.1
  • 18
  • 19
    • 41349099621 scopus 로고    scopus 로고
    • Biochemical and genetic bases of dehalorespiration
    • Futagami T., et al. Biochemical and genetic bases of dehalorespiration. Chem. Rec. 2008, 8:1-12.
    • (2008) Chem. Rec. , vol.8 , pp. 1-12
    • Futagami, T.1
  • 20
    • 33747346996 scopus 로고    scopus 로고
    • Temporal expression of respiratory genes in an enrichment culture containing Dehalococcoides ethenogenes
    • Rahm B.G., et al. Temporal expression of respiratory genes in an enrichment culture containing Dehalococcoides ethenogenes. Appl. Environ. Microbiol. 2006, 72:5486.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5486
    • Rahm, B.G.1
  • 21
    • 0029895362 scopus 로고    scopus 로고
    • Purification and characterization of tetrachloroethene reductive dehalogenase from Dehalospirillum multivorans
    • Neumann A., et al. Purification and characterization of tetrachloroethene reductive dehalogenase from Dehalospirillum multivorans. J. Biol. Chem. 1996, 271:16515.
    • (1996) J. Biol. Chem. , vol.271 , pp. 16515
    • Neumann, A.1
  • 22
    • 0033575218 scopus 로고    scopus 로고
    • Purification and molecular characterization of ortho-chlorophenol reductive dehalogenase, a key enzyme of halorespiration in Desulfitobacterium dehalogenans
    • van de Pas B.A., et al. Purification and molecular characterization of ortho-chlorophenol reductive dehalogenase, a key enzyme of halorespiration in Desulfitobacterium dehalogenans. J. Biol. Chem. 1999, 274:20287.
    • (1999) J. Biol. Chem. , vol.274 , pp. 20287
    • van de Pas, B.A.1
  • 23
    • 38449091968 scopus 로고    scopus 로고
    • Identification of a chlorobenzene reductive dehalogenase in Dehalococcoides sp. strain CBDB1
    • Adrian L., et al. Identification of a chlorobenzene reductive dehalogenase in Dehalococcoides sp. strain CBDB1. Appl. Environ. Microbiol. 2007, 73:7717-7724.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 7717-7724
    • Adrian, L.1
  • 24
    • 8144229485 scopus 로고    scopus 로고
    • Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1
    • Krajmalnik-Brown R., et al. Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1. Appl. Environ. Microbiol. 2004, 70:6347-6351.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 6347-6351
    • Krajmalnik-Brown, R.1
  • 25
    • 4143085164 scopus 로고    scopus 로고
    • Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution
    • Müller J.A., et al. Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution. Appl. Environ. Microbiol. 2004, 70:4880-4888.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4880-4888
    • Müller, J.A.1
  • 26
    • 4143110165 scopus 로고    scopus 로고
    • Purification, cloning, and sequencing of a 3,5-dichlorophenol reductive dehalogenase from Desulfitobacterium frappieri PCP-1
    • Thibodeau J., et al. Purification, cloning, and sequencing of a 3,5-dichlorophenol reductive dehalogenase from Desulfitobacterium frappieri PCP-1. Appl. Environ. Microbiol. 2004, 70:4532-4537.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4532-4537
    • Thibodeau, J.1
  • 27
    • 0036436529 scopus 로고    scopus 로고
    • Occurrence of several genes encoding putative reductive dehalogenases in Desulfitobacterium hafniense/frappieri and Dehalococcoides ethenogenes
    • Villemur R., et al. Occurrence of several genes encoding putative reductive dehalogenases in Desulfitobacterium hafniense/frappieri and Dehalococcoides ethenogenes. Can. J. Microbiol. 2002, 48:697-706.
    • (2002) Can. J. Microbiol. , vol.48 , pp. 697-706
    • Villemur, R.1
  • 28
    • 58949089922 scopus 로고    scopus 로고
    • Divergent roles of CprK paralogues from Desulfitobacterium hafniense in activating gene expression
    • Gabor K., et al. Divergent roles of CprK paralogues from Desulfitobacterium hafniense in activating gene expression. Microbiology 2008, 154:3686-3696.
    • (2008) Microbiology , vol.154 , pp. 3686-3696
    • Gabor, K.1
  • 29
    • 63849108021 scopus 로고    scopus 로고
    • Transcription analysis of genes encoding homologues of reductive dehalogenases in Dehalococcoides sp. strain CBDB1 by using terminal restriction fragment length polymorphism and quantitative PCR
    • Wagner A., et al. Transcription analysis of genes encoding homologues of reductive dehalogenases in Dehalococcoides sp. strain CBDB1 by using terminal restriction fragment length polymorphism and quantitative PCR. Appl. Environ. Microbiol. 2009, 75:1876-1884.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 1876-1884
    • Wagner, A.1
  • 30
    • 9644265299 scopus 로고    scopus 로고
    • Regulation of anaerobic dehalorespiration by the transcriptional activator CprK
    • Pop S.M., et al. Regulation of anaerobic dehalorespiration by the transcriptional activator CprK. J. Biol. Chem. 2004, 279:49910-49918.
    • (2004) J. Biol. Chem. , vol.279 , pp. 49910-49918
    • Pop, S.M.1
  • 31
    • 33645232936 scopus 로고    scopus 로고
    • Characterization of CprK1, a CRP/FNR-type transcriptional regulator of halorespiration from Desulfitobacterium hafniense
    • Gabor K., et al. Characterization of CprK1, a CRP/FNR-type transcriptional regulator of halorespiration from Desulfitobacterium hafniense. J. Bacteriol. 2006, 188:2604-2613.
    • (2006) J. Bacteriol. , vol.188 , pp. 2604-2613
    • Gabor, K.1
  • 32
    • 51649098521 scopus 로고    scopus 로고
    • Molecular basis of halorespiration control by CprK, a CRP-FNR type transcriptional regulator
    • Levy C., et al. Molecular basis of halorespiration control by CprK, a CRP-FNR type transcriptional regulator. Mol. Microbiol. 2008, 70:151-167.
    • (2008) Mol. Microbiol. , vol.70 , pp. 151-167
    • Levy, C.1
  • 33
    • 34547220974 scopus 로고    scopus 로고
    • Expression of reductive dehalogenase genes in Dehalococcoides ethenogenes strain 195 growing on tetrachloroethene, trichloroethene, or 2,3-dichlorophenol
    • Fung J.M., et al. Expression of reductive dehalogenase genes in Dehalococcoides ethenogenes strain 195 growing on tetrachloroethene, trichloroethene, or 2,3-dichlorophenol. Appl. Environ. Microbiol. 2007, 73:4439-4445.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 4439-4445
    • Fung, J.M.1
  • 34
    • 29144480680 scopus 로고    scopus 로고
    • Multiple reductive-dehalogenase-homologous genes are simultaneously transcribed during dechlorination by Dehalococcoides-containing cultures
    • Waller A.S., et al. Multiple reductive-dehalogenase-homologous genes are simultaneously transcribed during dechlorination by Dehalococcoides-containing cultures. Appl. Environ. Microbiol. 2005, 71:8257-8264.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8257-8264
    • Waller, A.S.1
  • 35
    • 48249093350 scopus 로고    scopus 로고
    • Dehalococcoides; gene transcripts as quantitative bioindicators of tetrachloroethene, trichloroethene, and cis-1,2-dichloroethene dehalorespiration rates
    • Rahm B.G., Richardson R.E. Dehalococcoides; gene transcripts as quantitative bioindicators of tetrachloroethene, trichloroethene, and cis-1,2-dichloroethene dehalorespiration rates. Environ. Sci. Technol. 2008, 42:5099-5105.
    • (2008) Environ. Sci. Technol. , vol.42 , pp. 5099-5105
    • Rahm, B.G.1    Richardson, R.E.2
  • 36
    • 55049091180 scopus 로고    scopus 로고
    • Characterization of the community structure of a dechlorinating mixed culture and comparisons of gene expression in planktonic and biofloc-associated Dehalococcoides and Methanospirillum species
    • Rowe A.R., et al. Characterization of the community structure of a dechlorinating mixed culture and comparisons of gene expression in planktonic and biofloc-associated Dehalococcoides and Methanospirillum species. Appl. Environ. Microbiol. 2008, 74:6709-6719.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 6709-6719
    • Rowe, A.R.1
  • 37
    • 23744455645 scopus 로고    scopus 로고
    • Reductive dechlorination of beta-hexachlorocyclohexane (β-HCH) by a Dehalobacter species in coculture with a Sedimentibacter sp
    • van Doesburg W., et al. Reductive dechlorination of beta-hexachlorocyclohexane (β-HCH) by a Dehalobacter species in coculture with a Sedimentibacter sp. FEMS Microbiol. Ecol. 2005, 54:87-95.
    • (2005) FEMS Microbiol. Ecol. , vol.54 , pp. 87-95
    • van Doesburg, W.1
  • 38
    • 37449031396 scopus 로고    scopus 로고
    • Real-time PCR quantification of Dehalococcoides populations: methods and applications
    • Cupples A.M. Real-time PCR quantification of Dehalococcoides populations: methods and applications. J. Microbiol. Methods 2008, 72:1-11.
    • (2008) J. Microbiol. Methods , vol.72 , pp. 1-11
    • Cupples, A.M.1
  • 39
    • 57449118500 scopus 로고    scopus 로고
    • Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology
    • Smith C.J., Osborn A.M. Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiol. Ecol. 2009, 67:6-20.
    • (2009) FEMS Microbiol. Ecol. , vol.67 , pp. 6-20
    • Smith, C.J.1    Osborn, A.M.2
  • 40
    • 2342555069 scopus 로고    scopus 로고
    • Development of a real-time PCR method for quantification of the three genera Dehalobacter, Dehalococcoides, and Desulfitobacterium in microbial communities
    • Smits T.H., et al. Development of a real-time PCR method for quantification of the three genera Dehalobacter, Dehalococcoides, and Desulfitobacterium in microbial communities. J. Microbiol. Methods 2004, 57:369-378.
    • (2004) J. Microbiol. Methods , vol.57 , pp. 369-378
    • Smits, T.H.1
  • 41
    • 43049130733 scopus 로고    scopus 로고
    • Quantifying genes and transcripts to assess the in situ physiology of Dehalococcoides spp. in a trichloroethene-contaminated groundwater site
    • Lee P.K.H., et al. Quantifying genes and transcripts to assess the in situ physiology of Dehalococcoides spp. in a trichloroethene-contaminated groundwater site. Appl. Environ. Microbiol. 2008, 74:2728-2739.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2728-2739
    • Lee, P.K.H.1
  • 42
    • 51149084296 scopus 로고    scopus 로고
    • Detection and identification of Dehalococcoides species responsible for in situ dechlorination of trichloroethene to ethene enhanced by hydrogen-releasing compounds
    • Nishimura M., et al. Detection and identification of Dehalococcoides species responsible for in situ dechlorination of trichloroethene to ethene enhanced by hydrogen-releasing compounds. Biotechnol. Appl. Biochem. 2008, 51:1-7.
    • (2008) Biotechnol. Appl. Biochem. , vol.51 , pp. 1-7
    • Nishimura, M.1
  • 43
    • 48749095131 scopus 로고    scopus 로고
    • Oxygen effect on Dehalococcoides viability and biomarker quantification
    • Amos B.K., et al. Oxygen effect on Dehalococcoides viability and biomarker quantification. Environ. Sci. Technol. 2008, 42:5718-5726.
    • (2008) Environ. Sci. Technol. , vol.42 , pp. 5718-5726
    • Amos, B.K.1
  • 44
    • 58149143148 scopus 로고    scopus 로고
    • Concurrent ethene generation and growth of Dehalococcoides containing vinyl chloride reductive dehalogenase genes during an enhanced reductive dechlorination field demonstration
    • Scheutz C., et al. Concurrent ethene generation and growth of Dehalococcoides containing vinyl chloride reductive dehalogenase genes during an enhanced reductive dechlorination field demonstration. Environ. Sci. Technol. 2008, 42:9302-9309.
    • (2008) Environ. Sci. Technol. , vol.42 , pp. 9302-9309
    • Scheutz, C.1
  • 45
    • 67650482588 scopus 로고    scopus 로고
    • Tracking functional guilds: Dehalococcoides spp. in European river basins contaminated with hexachlorobenzene
    • Taş N., et al. Tracking functional guilds: Dehalococcoides spp. in European river basins contaminated with hexachlorobenzene. Appl. Environ. Microbiol. 2009, 75:4696-4704.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 4696-4704
    • Taş, N.1
  • 46
    • 70450277146 scopus 로고    scopus 로고
    • Dehalogenimonas lykanthroporepellens gen. nov., sp nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater
    • Moe W.M., et al. Dehalogenimonas lykanthroporepellens gen. nov., sp nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater. Int. J. Syst. Evol. Microbiol. 2009, 59:2692-2697.
    • (2009) Int. J. Syst. Evol. Microbiol. , vol.59 , pp. 2692-2697
    • Moe, W.M.1
  • 47
    • 43449127197 scopus 로고    scopus 로고
    • Novel uncultured Chloroflexi dechlorinate perchloroethene to trans-dichloroethene in tidal flat sediments
    • Kittelmann S., Friedrich M.W. Novel uncultured Chloroflexi dechlorinate perchloroethene to trans-dichloroethene in tidal flat sediments. Environ. Microbiol. 2008, 10:1557-1570.
    • (2008) Environ. Microbiol. , vol.10 , pp. 1557-1570
    • Kittelmann, S.1    Friedrich, M.W.2
  • 48
    • 53949122025 scopus 로고    scopus 로고
    • Biostimulation and bioaugmentation to enhance dechlorination of polychlorinated dibenzo-p-dioxins in contaminated sediments
    • Ahn Y.B., et al. Biostimulation and bioaugmentation to enhance dechlorination of polychlorinated dibenzo-p-dioxins in contaminated sediments. FEMS Microbiol. Ecol. 2008, 66:271-281.
    • (2008) FEMS Microbiol. Ecol. , vol.66 , pp. 271-281
    • Ahn, Y.B.1
  • 49
    • 33644954959 scopus 로고    scopus 로고
    • Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethene-respiring Dehalococcoides isolate
    • Sung Y., et al. Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethene-respiring Dehalococcoides isolate. Appl. Environ. Microbiol. 2006, 72:1980.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 1980
    • Sung, Y.1
  • 50
    • 65549166732 scopus 로고    scopus 로고
    • Characterization of a Dehalobacter coculture that dechlorinates 1,2-dichloroethane to ethene and identification of the putative reductive dehalogenase gene
    • Grostern A., Edwards E.A. Characterization of a Dehalobacter coculture that dechlorinates 1,2-dichloroethane to ethene and identification of the putative reductive dehalogenase gene. Appl. Environ. Microbiol. 2009, 75:2684-2693.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 2684-2693
    • Grostern, A.1    Edwards, E.A.2
  • 51
    • 63849253144 scopus 로고    scopus 로고
    • Isolation of novel bacteria within the Chloroflexi capable of reductive dechlorination of 1,2,3-trichloropropane
    • Yan J., et al. Isolation of novel bacteria within the Chloroflexi capable of reductive dechlorination of 1,2,3-trichloropropane. Environ. Microbiol. 2009, 11:833-843.
    • (2009) Environ. Microbiol. , vol.11 , pp. 833-843
    • Yan, J.1
  • 52
    • 45849087630 scopus 로고    scopus 로고
    • High throughput gene expression measurement with real time PCR in a microfluidic dynamic array
    • Spurgeon S.L., et al. High throughput gene expression measurement with real time PCR in a microfluidic dynamic array. PLoS ONE 2008, 3:e1662.
    • (2008) PLoS ONE , vol.3
    • Spurgeon, S.L.1
  • 53
    • 33751005301 scopus 로고    scopus 로고
    • Nanoliter high throughput quantitative PCR
    • Morrison T., et al. Nanoliter high throughput quantitative PCR. Nucleic Acids Res. 2006, 34:e123.
    • (2006) Nucleic Acids Res. , vol.34
    • Morrison, T.1
  • 54
    • 77952270702 scopus 로고    scopus 로고
    • High-throughput nanovolume qPCR: next-generation platform combines microarray throughput with sensitivity
    • Gelfand D., Kastury K. High-throughput nanovolume qPCR: next-generation platform combines microarray throughput with sensitivity. Genet. Eng. Biotechnol. News 2009, 29.
    • (2009) Genet. Eng. Biotechnol. News , pp. 29
    • Gelfand, D.1    Kastury, K.2
  • 55
    • 34248159046 scopus 로고    scopus 로고
    • GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes
    • He Z.L., et al. GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. ISME J. 2007, 1:67-77.
    • (2007) ISME J. , vol.1 , pp. 67-77
    • He, Z.L.1
  • 56
    • 44949159958 scopus 로고    scopus 로고
    • Comparative genomics of Dehalococcoides ethenogenes 195 and an enrichment culture containing unsequenced Dehalococcoides strains
    • West K.A., et al. Comparative genomics of Dehalococcoides ethenogenes 195 and an enrichment culture containing unsequenced Dehalococcoides strains. Appl. Environ. Microbiol. 2008, 74:3533-3540.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 3533-3540
    • West, K.A.1
  • 57
    • 43049147593 scopus 로고    scopus 로고
    • Temporal transcriptomic microarray analysis of Dehalococcoides ethenogenes strain 195 during the transition into stationary phase
    • Johnson D.R., et al. Temporal transcriptomic microarray analysis of Dehalococcoides ethenogenes strain 195 during the transition into stationary phase. Appl. Environ. Microbiol. 2008, 74:2864-2872.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2864-2872
    • Johnson, D.R.1
  • 58
    • 67749139566 scopus 로고    scopus 로고
    • Investigation of carbon metabolism in Dehalococcoides ethenogenes strain 195 by use of isotopomer and transcriptomic analyses
    • Tang Y.J.J., et al. Investigation of carbon metabolism in Dehalococcoides ethenogenes strain 195 by use of isotopomer and transcriptomic analyses. J. Bacteriol. 2009, 191:5224-5231.
    • (2009) J. Bacteriol. , vol.191 , pp. 5224-5231
    • Tang, Y.J.J.1
  • 59
    • 70149123013 scopus 로고    scopus 로고
    • Isolation and characterization of Dehalococcoides sp. strain MB, which dechlorinates tetrachloroethene to trans-1,2-dichloroethene
    • Cheng D., He J. Isolation and characterization of Dehalococcoides sp. strain MB, which dechlorinates tetrachloroethene to trans-1,2-dichloroethene. Appl. Environ. Microbiol. 2009, 75:5910-5918.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 5910-5918
    • Cheng, D.1    He, J.2
  • 60
    • 34248165412 scopus 로고    scopus 로고
    • Metaproteomics: a new approach for studying functional microbial ecology
    • Maron P.A., et al. Metaproteomics: a new approach for studying functional microbial ecology. Microb. Ecol. 2007, 53:486-493.
    • (2007) Microb. Ecol. , vol.53 , pp. 486-493
    • Maron, P.A.1
  • 61
    • 33746767681 scopus 로고    scopus 로고
    • Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes
    • Morris R.M., et al. Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes. Environ. Microbiol. 2006, 8:1499-1509.
    • (2006) Environ. Microbiol. , vol.8 , pp. 1499-1509
    • Morris, R.M.1
  • 62
    • 33846123326 scopus 로고    scopus 로고
    • Comparative proteomics of Dehalococcoides spp. reveals strain-specific peptides associated with activity
    • Morris R.M., et al. Comparative proteomics of Dehalococcoides spp. reveals strain-specific peptides associated with activity. Appl. Environ. Microbiol. 2007, 73:320-326.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 320-326
    • Morris, R.M.1
  • 63
    • 70349686595 scopus 로고    scopus 로고
    • Absolute quantification of Dehalococcoides proteins: enzyme bioindicators of chlorinated ethene dehalorespiration
    • Werner J.J., et al. Absolute quantification of Dehalococcoides proteins: enzyme bioindicators of chlorinated ethene dehalorespiration. Environ. Microbiol. 2009, 11:2687-2697.
    • (2009) Environ. Microbiol. , vol.11 , pp. 2687-2697
    • Werner, J.J.1
  • 64
    • 84868230488 scopus 로고    scopus 로고
    • Environmental biotechnology: a bioremediation perspective
    • Koenigsberg S.S., et al. Environmental biotechnology: a bioremediation perspective. Remediation J. 2005, 15:5-25.
    • (2005) Remediation J. , vol.15 , pp. 5-25
    • Koenigsberg, S.S.1
  • 65
    • 33750584707 scopus 로고    scopus 로고
    • Proteomics and metabolomics: the molecular make-up of toxic aromatic pollutant bioremediation
    • Singh O.V. Proteomics and metabolomics: the molecular make-up of toxic aromatic pollutant bioremediation. Proteomics 2006, 6:5481-5492.
    • (2006) Proteomics , vol.6 , pp. 5481-5492
    • Singh, O.V.1
  • 66
    • 67849133745 scopus 로고    scopus 로고
    • Analytical strategies in lipidomics and applications in disease biomarker discovery
    • Hu C.X., et al. Analytical strategies in lipidomics and applications in disease biomarker discovery. J. Chromatr. B 2009, 877:2836-2846.
    • (2009) J. Chromatr. B , vol.877 , pp. 2836-2846
    • Hu, C.X.1
  • 67
    • 63249121217 scopus 로고    scopus 로고
    • Application of 'next-generation' sequencing technologies to microbial genetics
    • MacLean D., et al. Application of 'next-generation' sequencing technologies to microbial genetics. Nat. Rev. Microbiol. 2009, 7:287-296.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 287-296
    • MacLean, D.1
  • 68
    • 0025296244 scopus 로고
    • Desulfomonile tiedjei gen. nov. and sp. nov., a novel anaerobic, dehalogenating, sulfate-reducing bacterium
    • Deweerd K.A., et al. Desulfomonile tiedjei gen. nov. and sp. nov., a novel anaerobic, dehalogenating, sulfate-reducing bacterium. Arch. Microbiol. 1990, 154:23-30.
    • (1990) Arch. Microbiol. , vol.154 , pp. 23-30
    • Deweerd, K.A.1
  • 69
    • 33748779279 scopus 로고    scopus 로고
    • Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genes
    • Holmes V.F., et al. Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genes. Appl. Environ. Microbiol. 2006, 72:5877-5883.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5877-5883
    • Holmes, V.F.1
  • 70
    • 77953122456 scopus 로고    scopus 로고
    • The little bacteria that can; diversity, genomics and ecophysiology of Dehalococcoides spp. in contaminated environments
    • Taş N., et al. The little bacteria that can; diversity, genomics and ecophysiology of Dehalococcoides spp. in contaminated environments. Microb. Biotechnol. 2009, 9999.
    • (2009) Microb. Biotechnol. , pp. 9999
    • Taş, N.1
  • 71
    • 64749101213 scopus 로고    scopus 로고
    • A novel Dehalobacter species is involved in extensive 4,5,6,7-tetrachlorophthalide dechlorination
    • Yoshida N., et al. A novel Dehalobacter species is involved in extensive 4,5,6,7-tetrachlorophthalide dechlorination. Appl. Environ. Microbiol. 2009, 75:2400-2405.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 2400-2405
    • Yoshida, N.1
  • 72
    • 2542523843 scopus 로고    scopus 로고
    • ARB: a software environment for sequence data
    • Ludwig W., et al. ARB: a software environment for sequence data. Nucleic Acids Res. 2004, 32:1363-1371.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1363-1371
    • Ludwig, W.1
  • 73
    • 33845873289 scopus 로고    scopus 로고
    • Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
    • Letunic I., Bork P. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 2007, 23:127-128.
    • (2007) Bioinformatics , vol.23 , pp. 127-128
    • Letunic, I.1    Bork, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.