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Volumn 154, Issue 12, 2008, Pages 3686-3695

Divergent roles of CprK paralogues from Desulfitobacterium hafniense in activating gene expression

Author keywords

[No Author keywords available]

Indexed keywords

2 CHLOROPHENOL; 3 CHLOROPHENOL; BACTERIAL PROTEIN; CYCLIC AMP RECEPTOR FUMARATE AND NITRATE REDUCTION REGULATOR PROTEIN; ORGANOHALOGEN DERIVATIVE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR CPRK; TRANSCRIPTION FACTOR CPRK1; TRANSCRIPTION FACTOR CPRK2; TRANSCRIPTION FACTOR CPRK4; TRANSPOSASE; UNCLASSIFIED DRUG; CYCLIC AMP BINDING PROTEIN; IRON SULFUR PROTEIN; MEMBRANE PROTEIN; METHYL ACCEPTING CHEMOTAXIS PROTEINS; METHYL-ACCEPTING CHEMOTAXIS PROTEINS;

EID: 58949089922     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2008/021584-0     Document Type: Article
Times cited : (18)

References (43)
  • 1
    • 0034518219 scopus 로고    scopus 로고
    • YeiL, the third member of the CRP-FNR family in Escherichia coli
    • Anjum, M. F., Green, J. & Guest, J. R. (2000). YeiL, the third member of the CRP-FNR family in Escherichia coli. Microbiology 146, 3157-3170.
    • (2000) Microbiology , vol.146 , pp. 3157-3170
    • Anjum, M.F.1    Green, J.2    Guest, J.R.3
  • 2
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey, T. L. & Elkan, C. (1994). Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2, 28-36.
    • (1994) Proc Int Conf Intell Syst Mol Biol , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 3
    • 1842506160 scopus 로고    scopus 로고
    • Regulation at complex bacterial promoters: How bacteria use different promoter organizations to produce different regulatory outcomes
    • Barnard, A., Wolfe, A. & Busby, S. (2004). Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes. Curr Opin Microbiol 7, 102-108.
    • (2004) Curr Opin Microbiol , vol.7 , pp. 102-108
    • Barnard, A.1    Wolfe, A.2    Busby, S.3
  • 4
    • 0024445091 scopus 로고
    • fixK, a gene homologous with fnr and crp from Escherichia coli, regulates nitrogen fixation genes both positively and negatively in Rhizobium meliloti
    • Batut, J., Daveran-Mingot, M. L., David, M., Jacobs, J., Garnerone, A. M. & Kahn, D. (1989). fixK, a gene homologous with fnr and crp from Escherichia coli, regulates nitrogen fixation genes both positively and negatively in Rhizobium meliloti. EMBO J 8, 1279-1286.
    • (1989) EMBO J , vol.8 , pp. 1279-1286
    • Batut, J.1    Daveran-Mingot, M.L.2    David, M.3    Jacobs, J.4    Garnerone, A.M.5    Kahn, D.6
  • 5
    • 0032724622 scopus 로고    scopus 로고
    • Mechanisms for redox control of gene expression
    • Bauer, C. E., Elsen, S. & Bird, T. H. (1999). Mechanisms for redox control of gene expression. Annu Rev Microbiol 53, 495-523.
    • (1999) Annu Rev Microbiol , vol.53 , pp. 495-523
    • Bauer, C.E.1    Elsen, S.2    Bird, T.H.3
  • 6
    • 19044394317 scopus 로고    scopus 로고
    • Oxygen and nitrate-dependent regulation of dmsABC operon expression in Escherichia coli: Sites for Fnr and NarL protein interactions
    • Bearson, S. M., Albrecht, J. A. & Gunsalus, R. P. (2002). Oxygen and nitrate-dependent regulation of dmsABC operon expression in Escherichia coli: sites for Fnr and NarL protein interactions. BMC Microbiol 2, 13.
    • (2002) BMC Microbiol , vol.2 , pp. 13
    • Bearson, S.M.1    Albrecht, J.A.2    Gunsalus, R.P.3
  • 7
    • 0029931803 scopus 로고    scopus 로고
    • Desulfitobacterium hafniense sp. nov., an anaerobic, reductively dechlorinating bacterium
    • Christiansen, N. & Ahring, B. K. (1996). Desulfitobacterium hafniense sp. nov., an anaerobic, reductively dechlorinating bacterium. Int J Syst Bacteriol 46, 442-448.
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 442-448
    • Christiansen, N.1    Ahring, B.K.2
  • 8
    • 0032475852 scopus 로고    scopus 로고
    • Purification and characterization of the 3-chloro-4-hydroxyphenylacetate reductive dehalogenase of Desulfitobacterium hafniense
    • Christiansen, N., Ahring, B. K., Wohlfarth, G. & Diekert, G. (1998). Purification and characterization of the 3-chloro-4-hydroxyphenylacetate reductive dehalogenase of Desulfitobacterium hafniense. FEBS Lett 436, 159-162.
    • (1998) FEBS Lett , vol.436 , pp. 159-162
    • Christiansen, N.1    Ahring, B.K.2    Wohlfarth, G.3    Diekert, G.4
  • 9
    • 0033772905 scopus 로고    scopus 로고
    • Bacterial promoters triggering biodegradation of aromatic pollutants
    • Diaz, E. & Prieto, M. A. (2000). Bacterial promoters triggering biodegradation of aromatic pollutants. Curr Opin Biotechnol 11, 467-475.
    • (2000) Curr Opin Biotechnol , vol.11 , pp. 467-475
    • Diaz, E.1    Prieto, M.A.2
  • 10
    • 0033987161 scopus 로고    scopus 로고
    • HbaR, a 4-hydroxybenzoate sensor and FNR-CRP superfamily member, regulates anaerobic 4-hydroxybenzoate degradation by Rhodopseudomonas palustris
    • Egland, P. G. & Harwood, C. S. (2000). HbaR, a 4-hydroxybenzoate sensor and FNR-CRP superfamily member, regulates anaerobic 4-hydroxybenzoate degradation by Rhodopseudomonas palustris. J Bacteriol 182, 100-106.
    • (2000) J Bacteriol , vol.182 , pp. 100-106
    • Egland, P.G.1    Harwood, C.S.2
  • 11
    • 33645232936 scopus 로고    scopus 로고
    • Characterisation of CprK1, a CRP/FNR-type transcriptional regulator of halorespiration from Desulfitobacterium hafniense
    • Gábor, K., Veracissimo, C. S., Cyran, B. C., Ter Horst, P., Meijer, N. P., Smidt, H., de Vos, W. M. & van der Oost, J. (2006). Characterisation of CprK1, a CRP/FNR-type transcriptional regulator of halorespiration from Desulfitobacterium hafniense. J Bacteriol 188, 2604-2613.
    • (2006) J Bacteriol , vol.188 , pp. 2604-2613
    • Gábor, K.1    Veracissimo, C.S.2    Cyran, B.C.3    Ter Horst, P.4    Meijer, N.P.5    Smidt, H.6    de Vos, W.M.7    van der Oost, J.8
  • 13
    • 0034982114 scopus 로고    scopus 로고
    • Functional versatility in the CRP-FNR superfamily of transcription factors: FNR and FLP
    • Green, J., Scott, C. & Guest, J. R. (2001). Functional versatility in the CRP-FNR superfamily of transcription factors: FNR and FLP. Adv Microb Physiol 44, 1-34.
    • (2001) Adv Microb Physiol , vol.44 , pp. 1-34
    • Green, J.1    Scott, C.2    Guest, J.R.3
  • 14
    • 0032942360 scopus 로고    scopus 로고
    • NahY, a catabolic plasmid-encoded receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene
    • Grimm, A. C. & Harwood, C. S. (1999). NahY, a catabolic plasmid-encoded receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene. J Bacteriol 181, 3310-3316.
    • (1999) J Bacteriol , vol.181 , pp. 3310-3316
    • Grimm, A.C.1    Harwood, C.S.2
  • 15
    • 0028172818 scopus 로고
    • Identification of the pcaRKF gene cluster from Pseudomonas putida: Involvement in chemotaxis, biodegradation, and transport of 4-hydroxybenzoate
    • Harwood, C. S., Nichols, N. N., Kim, M. K., Ditty, J. L. & Parales, R. E. (1994). Identification of the pcaRKF gene cluster from Pseudomonas putida: involvement in chemotaxis, biodegradation, and transport of 4-hydroxybenzoate. J Bacteriol 176, 6479-6488.
    • (1994) J Bacteriol , vol.176 , pp. 6479-6488
    • Harwood, C.S.1    Nichols, N.N.2    Kim, M.K.3    Ditty, J.L.4    Parales, R.E.5
  • 16
    • 19344372749 scopus 로고    scopus 로고
    • Gene duplication: The genomic trade in spare parts
    • Hurles, M. (2004). Gene duplication: the genomic trade in spare parts. PLoS Biol 2, E206.
    • (2004) PLoS Biol , vol.2
    • Hurles, M.1
  • 17
    • 0029039260 scopus 로고
    • Cloning and partial characterization of regulated promoters from Lactococcus lactis Tn917-lacZ integrants with the new promoter probe vector, pAK80
    • Israelsen, H., Madsen, S. M., Vrang, A., Hansen, E. B. & Johansen, E. (1995). Cloning and partial characterization of regulated promoters from Lactococcus lactis Tn917-lacZ integrants with the new promoter probe vector, pAK80. Appl Environ Microbiol 61, 2540-2547.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 2540-2547
    • Israelsen, H.1    Madsen, S.M.2    Vrang, A.3    Hansen, E.B.4    Johansen, E.5
  • 18
    • 28644444340 scopus 로고    scopus 로고
    • Bacterial degradation of xenobiotic compounds: Evolution and distribution of novel enzyme activities
    • Janssen, D. B., Dinkla, I. J., Poelarends, G. J. & Terpstra, P. (2005). Bacterial degradation of xenobiotic compounds: evolution and distribution of novel enzyme activities. Environ Microbiol 7, 1868-1882.
    • (2005) Environ Microbiol , vol.7 , pp. 1868-1882
    • Janssen, D.B.1    Dinkla, I.J.2    Poelarends, G.J.3    Terpstra, P.4
  • 19
  • 20
    • 0027236999 scopus 로고
    • Transcriptional regulation by cAMP and its receptor protein
    • Kolb, A., Busby, S., Buc, H., Garges, S. & Adhya, S. (1993). Transcriptional regulation by cAMP and its receptor protein. Annu Rev Biochem 62, 749-795.
    • (1993) Annu Rev Biochem , vol.62 , pp. 749-795
    • Kolb, A.1    Busby, S.2    Buc, H.3    Garges, S.4    Adhya, S.5
  • 21
    • 0344153756 scopus 로고    scopus 로고
    • Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: Exploiting the metabolic spectrum by controlling alternative gene programs
    • Korner, H., Sofia, H. J. & Zumft, W. G. (2003). Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs. FEMS Microbiol Rev 27, 559-592.
    • (2003) FEMS Microbiol Rev , vol.27 , pp. 559-592
    • Korner, H.1    Sofia, H.J.2    Zumft, W.G.3
  • 22
    • 0026739804 scopus 로고
    • Isolation and characterization of an anaerobic chlorophenol-transforming bacterium
    • Madsen, T. & Licht, D. (1992). Isolation and characterization of an anaerobic chlorophenol-transforming bacterium. Appl Environ Microbiol 58, 2874-2878.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 2874-2878
    • Madsen, T.1    Licht, D.2
  • 23
    • 34249726089 scopus 로고    scopus 로고
    • Transcriptional activation by CprK1 is regulated by protein structural changes induced by effector binding and redox state
    • Mazon, H., Gábor, K., Leys, D., Heck, A. J., van der Oost, J. & van den Heuvel, R. H. (2007). Transcriptional activation by CprK1 is regulated by protein structural changes induced by effector binding and redox state. J Biol Chem 282, 11281-11290.
    • (2007) J Biol Chem , vol.282 , pp. 11281-11290
    • Mazon, H.1    Gábor, K.2    Leys, D.3    Heck, A.J.4    van der Oost, J.5    van den Heuvel, R.H.6
  • 24
    • 3242876311 scopus 로고    scopus 로고
    • BLAST: At the core of a powerful and diverse set of sequence analysis tools
    • McGinnis, S. & Madden, T. L. (2004). BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res 32, W20-W25.
    • (2004) Nucleic Acids Res , vol.32
    • McGinnis, S.1    Madden, T.L.2
  • 25
    • 32544451968 scopus 로고    scopus 로고
    • A multitude of CRP/FNR-like transcription proteins in Bradyrhizobium japonicum
    • Mesa, S., Hennecke, H. & Fischer, H. M. (2006). A multitude of CRP/FNR-like transcription proteins in Bradyrhizobium japonicum. Biochem Soc Trans 34, 156-159.
    • (2006) Biochem Soc Trans , vol.34 , pp. 156-159
    • Mesa, S.1    Hennecke, H.2    Fischer, H.M.3
  • 26
    • 0002511466 scopus 로고    scopus 로고
    • GeneDoc: Analysis and visualization of genetic variation
    • Nicholas, K. B., Nicholas, H. B., Jr & Deerfield, D. W., II (1997). GeneDoc: analysis and visualization of genetic variation. EMBnet.news 4 (2), 1-4.
    • (1997) EMBnet.news , vol.4 , Issue.2 , pp. 1-4
    • Nicholas, K.B.1    Nicholas Jr, H.B.2    Deerfield II, D.W.3
  • 27
    • 0036277082 scopus 로고    scopus 로고
    • Bacterial chemotaxis to pollutants and plant-derived aromatic molecules
    • Parales, R. E. & Harwood, C. S. (2002). Bacterial chemotaxis to pollutants and plant-derived aromatic molecules. Curr Opin Microbiol 5, 266-273.
    • (2002) Curr Opin Microbiol , vol.5 , pp. 266-273
    • Parales, R.E.1    Harwood, C.S.2
  • 28
    • 9644265299 scopus 로고    scopus 로고
    • Regulation of anaerobic dehalorespiration by the transcriptional activator CprK
    • Pop, S. M., Kolarik, R. J. & Ragsdale, S. W. (2004). Regulation of anaerobic dehalorespiration by the transcriptional activator CprK. J Biol Chem 279, 49910-49918.
    • (2004) J Biol Chem , vol.279 , pp. 49910-49918
    • Pop, S.M.1    Kolarik, R.J.2    Ragsdale, S.W.3
  • 29
    • 0022243202 scopus 로고
    • Transcriptional control of the nah and sal hydrocarbon-degradation operons by the nahR gene product
    • Schell, M. A. (1985). Transcriptional control of the nah and sal hydrocarbon-degradation operons by the nahR gene product. Gene 36, 301-309.
    • (1985) Gene , vol.36 , pp. 301-309
    • Schell, M.A.1
  • 30
    • 0025008168 scopus 로고
    • Sequence Logos: A new way to display consensus sequences
    • Schneider, T. D. & Stephens, R. M. (1990). Sequence Logos: a new way to display consensus sequences. Nucleic Acids Res 18, 6097-6100.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 31
    • 0037464471 scopus 로고    scopus 로고
    • DNA target sequence and FNR-dependent gene expression
    • Scott, C., Partridge, J. D., Stephenson, J. R. & Green, J. (2003). DNA target sequence and FNR-dependent gene expression. FEBS Lett 541, 97-101.
    • (2003) FEBS Lett , vol.541 , pp. 97-101
    • Scott, C.1    Partridge, J.D.2    Stephenson, J.R.3    Green, J.4
  • 32
    • 9244251590 scopus 로고    scopus 로고
    • Anaerobic microbial dehalogenation
    • Smidt, H. & de Vos, W. M. (2004). Anaerobic microbial dehalogenation. Annu Rev Microbiol 58, 43-73.
    • (2004) Annu Rev Microbiol , vol.58 , pp. 43-73
    • Smidt, H.1    de Vos, W.M.2
  • 33
    • 0033814296 scopus 로고    scopus 로고
    • Transcriptional regulation of the cpr gene cluster in ortho-chlorophenol-respiring Desulfitobacterium dehalogenans
    • Smidt, H., van Leest, M., van der Oost, J. & de Vos, W. M. (2000). Transcriptional regulation of the cpr gene cluster in ortho-chlorophenol-respiring Desulfitobacterium dehalogenans. J Bacteriol 182, 5683-5691.
    • (2000) J Bacteriol , vol.182 , pp. 5683-5691
    • Smidt, H.1    van Leest, M.2    van der Oost, J.3    de Vos, W.M.4
  • 34
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 35
    • 0028896818 scopus 로고
    • Specificity of reductive dehalogenation of substituted ortho-chlorophenols by Desulfitobacterium dehalogenans JW/IU-DC1
    • Utkin, I., Dalton, D. D. & Wiegel, J. (1995). Specificity of reductive dehalogenation of substituted ortho-chlorophenols by Desulfitobacterium dehalogenans JW/IU-DC1. Appl Environ Microbiol 61, 346-351.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 346-351
    • Utkin, I.1    Dalton, D.D.2    Wiegel, J.3
  • 36
    • 0038504021 scopus 로고    scopus 로고
    • Genomic islands and the evolution of catabolic pathways in bacteria
    • Van der Meer, J. R. & Sentchilo, V. (2003). Genomic islands and the evolution of catabolic pathways in bacteria. Curr Opin Biotechnol 14, 248-254.
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 248-254
    • Van der Meer, J.R.1    Sentchilo, V.2
  • 37
    • 0035191260 scopus 로고    scopus 로고
    • The potential of anaerobic bacteria to degrade chlorinated compounds
    • Van Eekert, M. H. & Schraa, G. (2001). The potential of anaerobic bacteria to degrade chlorinated compounds. Water Sci Technol 44, 49-56.
    • (2001) Water Sci Technol , vol.44 , pp. 49-56
    • Van Eekert, M.H.1    Schraa, G.2
  • 38
    • 0031037665 scopus 로고    scopus 로고
    • FnrP and NNR of Paracoccus denitrificans are both members of the FNR family of transcriptional activators but have distinct roles in respiratory adaptation in response to oxygen limitation
    • Van Spanning, R. J., De Boer, A. P., Reijnders, W. N., Westerhoff, H. V., Stouthamer, A. H. & Van der Oost, J. (1997). FnrP and NNR of Paracoccus denitrificans are both members of the FNR family of transcriptional activators but have distinct roles in respiratory adaptation in response to oxygen limitation. Mol Microbiol 23, 893-907.
    • (1997) Mol Microbiol , vol.23 , pp. 893-907
    • Van Spanning, R.J.1    De Boer, A.P.2    Reijnders, W.N.3    Westerhoff, H.V.4    Stouthamer, A.H.5    Van der Oost, J.6
  • 39
    • 32544445455 scopus 로고    scopus 로고
    • Specificity of FNR-type regulators in Paracoccus denitrificans
    • Veldman, R., Reijnders, W. N. & Van Spanning, R. J. (2006). Specificity of FNR-type regulators in Paracoccus denitrificans. Biochem Soc Trans 34, 94-96.
    • (2006) Biochem Soc Trans , vol.34 , pp. 94-96
    • Veldman, R.1    Reijnders, W.N.2    Van Spanning, R.J.3
  • 40
    • 0036436529 scopus 로고    scopus 로고
    • Occurrence of several genes encoding putative reductive dehalogenases in Desulfitobacterium hafniense/frappieri and Dehalococcoides ethenogenes
    • Villemur, R., Saucier, M., Gauthier, A. & Beaudet, R. (2002). Occurrence of several genes encoding putative reductive dehalogenases in Desulfitobacterium hafniense/frappieri and Dehalococcoides ethenogenes. Can J Microbiol 48, 697-706.
    • (2002) Can J Microbiol , vol.48 , pp. 697-706
    • Villemur, R.1    Saucier, M.2    Gauthier, A.3    Beaudet, R.4
  • 41
    • 0033060309 scopus 로고    scopus 로고
    • Multiple transcription factors of the FNR family in denitrifying Pseudomonas stutzeri: Characterization of four fnr-like genes, regulatory responses and cognate metabolic processes
    • Vollack, K. U., Hartig, E., Korner, H. & Zumft, W. G. (1999). Multiple transcription factors of the FNR family in denitrifying Pseudomonas stutzeri: characterization of four fnr-like genes, regulatory responses and cognate metabolic processes. Mol Microbiol 31, 1681-1694.
    • (1999) Mol Microbiol , vol.31 , pp. 1681-1694
    • Vollack, K.U.1    Hartig, E.2    Korner, H.3    Zumft, W.G.4
  • 42
    • 4444284230 scopus 로고    scopus 로고
    • Modulated receptor interactions in bacterial transmembrane signaling
    • Webre, D. J., Wolanin, P. M. & Stock, J. B. (2004). Modulated receptor interactions in bacterial transmembrane signaling. Trends Cell Biol 14, 478-482.
    • (2004) Trends Cell Biol , vol.14 , pp. 478-482
    • Webre, D.J.1    Wolanin, P.M.2    Stock, J.B.3
  • 43
    • 0031456471 scopus 로고    scopus 로고
    • Cell biology and molecular basis of denitrification
    • Zumft, W. G. (1997). Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61, 533-616.
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 533-616
    • Zumft, W.G.1


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